Jacob Marsh

23 posts

Jacob Marsh

@ji_marsh

Population genetics postdoc @UNC 🧬 PhD in plant bioinformatics 🌱

Joined June 2020

Jacob Marsh
@ji_marsh
May 9, 2023
If you're running GWAS and are interested in digging deeper to understand variation in a local trait-associated region, take a look at `crosshap`, our newly developed R package for local haplotype visualization - preprint out as of today :)
biorxiv.org
Local haplotype visualization for trait association analysis with crosshap
Summary GWAS excels at harnessing dense genomic variant datasets to identify candidate regions responsible for producing a given phenotype. However, GWAS and traditional fine-mapping methods do not...
Jacob Marsh
@ji_marsh
Apr 20, 2023
Paper out delving into the PDH1 locus underlying pod dehiscence in legumes! We ran comparative analyses across syntenic regions to figure out what genomic variation is conserved across legumes... onlinelibrary.wiley.com/doi/10.1111/tp… @ThePlantJournal
onlinelibrary.wiley.com
Legume‐wide comparative analysis of pod shatter locus PDH1 reveals phaseoloid specificity, high...
Our findings provide key insights into the evolutionary history of PDH1 and lay the foundation for optimizing the pod dehiscence role of PDH1 in major and understudied legume species.
Jacob Marsh
@ji_marsh
May 13, 2022
This matrix dino on the Armatus page has such good energy cs.cmu.edu/~ckingsf/softw…