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Seyone Chithrananda
2,107 posts
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Seyone Chithrananda
@SeyoneC
🇨🇦 | 1st yr phd @stanford, bear @ucberkeley
Stanford
seyonec.com
Joined January 2019
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  • Pinned
    user avatar
    Seyone Chithrananda
    @SeyoneC
    Sep 17, 2024
    Really excited to finally share this work from my internship at @MSFTResearch in summer 2023! This project began when Judith and Kevin raised a simple question: can we develop better latent mappings of olfactory stimuli, such as molecules to odor perception? Summary (1/12):
    user avatar
    Kevin K. Yang 楊凱筌
    @KevinKaichuang
    Sep 17, 2024
    Smell is the least-understood of our senses. With @jdthamores and @SeyoneC, we trained biologically-inspired models that first map odorant molecules to their receptor activation profiles and subsequently predicts their odor percepts.
    41K
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    May 26, 2021
    Very excited to share I've committed to @UCBerkeley! I'll likely be studying CS, statistics, and chemistry in more depth. Also psyched to get to meet some of the incredible people from Cal I've gotten to know online!
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Oct 24, 2020
    Very excited to announce my first preprint (code included) with @rbhar90 and @gabe_grand on utilizing transformers for molecular property prediction! arxiv.org/pdf/2010.09885… (1/n)
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Jun 8, 2024
    In Palo Alto this summer working with @BrianHie’s group @arcinstitute! Really excited to work on some projects relating to controllable DNA sequence design. reach out if you’re around!
    18K
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Jan 31, 2024
    Only at Berkeley does your probability/random processes class extend the hw deadline because of the @icmlconf submission deadline LOL
    23K
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Feb 2, 2023
    Excited to share I’ll be joining @MSFTResearch this summer, advised by the awesome @jdthamores and @KevinKaichuang!! Thrilled to tackle some interesting problems in ML, proteins and molecules, and return to Boston once again! :)
    16K
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Dec 18, 2020
    ChemBERTa has hit nearly 200,000 @huggingface API calls in the past 30 days! @deep_chem
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Jan 3, 2025
    Excited to share our work on calibrated protein search and genome mining with conformal prediction, now in @NatureComms! 📎 rdcu.be/d5pJG 💻 github.com/ronboger/confo… (1/3)
    user avatar
    ron boger
    @ronboger
    Jun 28, 2024
    I’m really excited to share our new pre-print “Functional protein mining with conformal guarantees”, with @SeyoneC @ml_angelopoulos @PeterHYoon Michael Jordan @Doudna_lab biorxiv.org/content/10.110… 🧵
    16K
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Oct 22, 2022
    Excited to share a preprint from my internship at @Dyno_Tx, "A Benchmark Framework for Evaluating Structure-to-Sequence Models for Protein Design", was accepted @workshopmlsb @NeurIPSConf! Loved working with Jeffrey Chan, David Brookes and @samsinai on this. Preprint out soon!
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Dec 5, 2022
    First ever in-person conference in the books! Really enjoyed presenting our poster @workshopmlsb on understanding how structure-to-sequence protein design models (@MetaAI ESM-IF1, @UWproteindesign ProteinMPNN) perform in combinatorially complete fitness landscapes.
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Jul 4, 2020
    So awesome to see the @deep_chem ChemBERTa masked language modelling demo available live on @huggingface's model hub using their API!
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Apr 7, 2020
    Used @huggingface's amazing tools to train RoBERTa (a variant of BERT) for masked language modelling of SMILES strings from ZINC! Hopefully, the models learned representations of molecular structure and design are of use for property prediction.
    huggingface.co
    seyonec/ChemBERTa-zinc-base-v1 · Hugging Face
    We’re on a journey to advance and democratize artificial intelligence through open source and open science.
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    Oct 24, 2023
    Incredible talk from @ElliotHershberg about where computation aided biology is headed in metabolomics, genetic design and single-cell omics. And thanks to @srikosuri for popping by!
    user avatar
    Seyone Chithrananda
    @SeyoneC
    Oct 16, 2023
    Excited for our next BioML seminar w/ @ElliotHershberg! One of my favourite writers, he'll be coming next Monday evening (Berkeley, in-person) to speak about some cool ML/bio problems he's been thinking about. Register here: lu.ma/sav5b4t9
    16K
  • user avatar
    Seyone Chithrananda
    @SeyoneC
    May 19, 2024
    Its been a blast setting up and organizing the BioML seminar this year w/ @jajoosam @voidshapes! We've uploaded the recorded seminars with @SGRodriques, @RDasLab and @aakarshv1's excellent primer on ML methods in protein engineering! Check 'em out: youtube.com/watch?v=opeKuk…
    8.8K