The mission of the Flatiron Institute is to advance scientific research through computational methods, including data analysis, theory, modeling and simulation.

Simons Foundation

Featured News

Still from a simulation showing a cross section of an accretion disk around a black hole.

Center for Computational Astrophysics Groundbreaking Simulations Show How Black Holes Glow Bright By Thomas Sumner

New simulations created by astrophysicists at the Flatiron Institute and the Institute for Advanced Study reveal how material flowing around and into black holes creates intense light shows. The simulations are the first to fully capture the interplay between light and matter under Albert Einstein’s theory of general relativity.

A still image from a fluid dynamics simulation.

Flatiron Institute These New AI Models Are Trained on Physics, Not Words, and They’re Driving Discovery

An animated GIF that shows the morphogenesis of the hindgut primordium of a fruit fly.

Center for Computational Biology From Ring to Keyhole: Modeling How Tissues Mold the Fruit Fly’s Gut

Our Centers

Center for Computational Astrophysics

Center for Computational Biology

Center for Computational Mathematics

Center for Computational Neuroscience

Center for Computational Quantum Physics

Scientific Computing Core

It develops, deploys and maintains computational infrastructure — from supercomputers to desktop PCs — dedicated solely to the use of Flatiron researchers.

Initiatives

Initiative for Computational Catalysis

The Simons Foundation Initiative for Computational Catalysis is a new effort within the Flatiron Institute dedicated to the development and application of computational techniques enabling the rational design of more efficient and more affordable catalysts.

Foundation Models of Science

Our goal is to accelerate the development of versatile foundation models tailored for numerical datasets and scientific machine learning tasks. The challenge we are undertaking is to build AI models which leverage information from heterogeneous datasets and across different scientific fields, which, contrary to domains like natural language processing, do not share a unifying representation.

Collaborative Work

Machine Learning at the Flatiron Institute

Machine learning has become an indispensable tool for computational science, and it is an active and growing area of research throughout the Flatiron Institute.

Structural and Molecular Biophysics

Underlying all biological processes are molecules and their interactions with each other. However, our ability to understand how these molecules function over biologically relevant scales remains very limited.

Learning the Universe

This collaboration aims to understand and determine the evolution and initial conditions of our universe, using observations via a Bayesian forward modeling approach.

CCA
| Columbia University
| Lawrence Berkeley National Lab
| Harvard University
| Stockholm University
| Institute D'Astrophysique de Paris
| Université de Montreal
| Princeton University
| Carnegie Mellon University
| Max-Planck Institute for Astrophysics

Flatiron Institute Idea Scholar Program

For distinguished scientists interested in developing scientific talent in the workforce and enabling pathways to science

Scholars may engage in a variety of activities, such as working on scientific projects, starting new collaborations, mentoring junior scientists, and organizing or participating in workshops and career development events.

Learn More

A major effort of the Flatiron Institute is the development and support of high-quality, open-source software for research.

View All Software

Research Highlights

September 8, 2026

Live imaging endogenous transcription factor dynamics reveals mechanisms of epiblast and primitive endoderm fate segregation

Rebecca P. Kim-Yip, David Denberg, H. Nunley , et al.

The segregation of the epiblast (EPI) and primitive endoderm (PE) cell types in the preimplantation mouse embryo is not only…

Current Biology

July 25, 2026

The physical consequences of sperm gigantism

J. I. Alsous, B. Chakrabarti, B. Palmer, M. Shelley

The male fruit fly produces ~1.8 mm long sperm, thousands of which can be stored until mating in a ~200…

arXiv:2507.14567

July 10, 2026

The open-source Masala software suite: Facilitating rapid methods development for synthetic heteropolymer design

Although canonical protein design has benefited from machine learning methods trained on databases of protein sequences and structures, synthetic heteropolymer…

bioRxiv:2025.07.02.662756

News & Announcements

Center for Computational Astrophysics

January 21, 2026

Unveiling the Universe’s Origins and Current State by Modeling Its Many Faces By Marcus Banks

Adrian Bayer on the roof of the Simons Foundation offices, looking towards the sky.

Center for Computational Quantum Physics

January 19, 2026

Hidden Order in Quantum Confusion: The Pseudogap

Photo of glowing green tabletop laser equipment with researchers looking on.

Center for Computational Biology

January 08, 2026

A Tug-of-War Explains a Decades-Old Question About How Bacteria Swim By Jane Beaufore

Stylized illustration of a swimming bacteria with a focus on their propeller-like flagella.

Leadership

Leslie Greengard, M.D., Ph.D.

Director, CCM

Leslie Greengard joined the Simons Foundation in 2013 as founding director of the Simons Center for Data Analysis, now called the Center for Computational Biology. Prior to that, Greengard served as director of the Courant Institute of Mathematical Sciences at New York University.

Julianne Dalcanton, Ph.D.

Director, CCA

Julianne Dalcanton joined the Simons Foundation in September 2021 as the director of the Flatiron Institute’s Center for Computational Astrophysics (CCA). Her research specializes in the origins and evolution of galaxies.

Ian Fisk, Ph.D.

Chief Technology Officer, Simons Foundation

Ian Fisk came to the Simons Foundation in 2014 after working in the computing division at the Fermi National Accelerator Laboratory in Illinois since 2003. Fisk was the Compact Muon Solenoid (CMS) experiment’s computing coordinator at CERN from 2010 to 2013, overseeing operations and improvements…

Antoine Georges, Ph.D.

Director, CCQ

Antoine Georges is a professor of physics at the Collège de France, where he holds the chair in condensed matter physics. He also has joint appointments with École Polytechnique and the University of Geneva. He received his Ph.D. from the École Normale Supérieure in 1988.…

Andrew Millis, Ph.D.

Co-Director, CCQ

Andrew Millis is co-director of the Center for Computational Quantum Physics at the Flatiron Institute and professor of physics at Columbia University. He currently serves as Managing Director of the Flatiron Institute.

Michael Shelley, Ph.D.

Director, CCB

Michael Shelley joined the Simons Foundation in 2016 to work on the modeling and simulation of complex systems arising in physics and biology.

Eero P. Simoncelli, Ph.D.

Director, CCN

Eero P. Simoncelli is the inaugural director of the Center for Computational Neuroscience. Eero P. Simoncelli’s research interests span a wide range of topics in the representation and analysis of visual images and sounds in both machine and biological vision systems.