ELEMENTAL SCIENTIFIC

ESI SC
Installation and Software Guide
 ESI SC

Version 2.9

Installation and Software Guide

 Elemental Scientific
7277 World Communications Drive
Omaha, NE 68122 USA
Phone 402.991.7800 • Fax 402.991.7799

[Link]

Rev 1 1
 Table of Contents

Introduction ....................................................................................................................................................................... 5
Description ..................................................................................................................................................................... 5
Requirements ................................................................................................................................................................ 5
How It Works ................................................................................................................................................................. 6
Getting Started .................................................................................................................................................................. 9
Software Installation...................................................................................................................................................... 9
Communication & Software Configuration ................................................................................................................... 9
Agilent ChemStation and SC Autosampler .............................................................................................................. 10
Agilent MP Expert and SC Autosampler................................................................................................................... 15
Agilent MassHunter and SC Autosampler................................................................................................................ 19
Bruker Quantum and SC Autosampler..................................................................................................................... 23
FIALab and SC Autosampler ..................................................................................................................................... 26
GV Isoprobe and SC Autosampler............................................................................................................................ 29
ICP Manager and SC Autosampler ........................................................................................................................... 32
LECO and SC Autosampler ....................................................................................................................................... 36
Nu Plasma and SC Autosampler............................................................................................................................... 39
Nu AttoLab and SC Autosampler ............................................................................................................................. 42
Perkin Elmer Syngistix-ICP and SC Autosampler ...................................................................................................... 46
Perkin Elmer Syngistix-ICPMS and SC Autosampler ................................................................................................ 49
Perkin Elmer Elan and SC Autosampler (via GPIB) ................................................................................................... 54
Perkin Elmer WinLab32 (v 2.2 to 3.3) and SC Autosampler (via GPIB) .................................................................... 58
Perkin Elmer WinLab32 (v 3.4 to 4.0) and SC Autosampler (via USB) .................................................................... 61
Perkin Elmer WinLab32 (v 5.0-5.3) and SC Autosampler (via USB) ......................................................................... 64
Perkin Elmer NexION and SC Autosampler .............................................................................................................. 67
SC Emulation and SC Autosampler (via RS-232) ...................................................................................................... 72
Spectro SAV and SC Autosampler ............................................................................................................................ 75
Element/Neptune and SC Autosampler................................................................................................................... 78
iTEVA/TEVA and SC Autosampler ........................................................................................................................... 81
PlasmaLab and SC-Autosampler ........................................................................................................................... 85
Qtegra and SC-Autosampler .................................................................................................................................. 88
ICP Expert I & II and SC Autosampler ....................................................................................................................... 91
ICP-MS Expert and SC Autosampler......................................................................................................................... 94
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Software Overview .......................................................................................................................................................... 98
Main Window .............................................................................................................................................................. 98
Rack Configuration................................................................................................................................................... 99
Menu Items ................................................................................................................................................................ 100
File .......................................................................................................................................................................... 100
Calibrate ................................................................................................................................................................. 100
Manual ................................................................................................................................................................... 102
Configure................................................................................................................................................................ 103
Diagnosis ................................................................................................................................................................ 108
Communication...................................................................................................................................................... 108
FAST ....................................................................................................................................................................... 109
About ..................................................................................................................................................................... 110
FAST Method Design...................................................................................................................................................... 110
How a FAST Method is Activated............................................................................................................................... 111
How a FAST Method is Defined ................................................................................................................................. 111
Basic FAST Method .................................................................................................................................................... 111
Typical Sample Analysis ............................................................................................................................................. 112
Tuning the Instrument when connected to FAST ...................................................................................................... 114
Important Design Criteria for a Basic FAST Method .................................................................................................. 114
Setting Read-Delay................................................................................................................................................. 115
Setting Wash/Rinse Time ....................................................................................................................................... 116
Procedure for Qualification of a Basic FAST Method ................................................................................................ 117
Loop Rinse Toggle (LRT) Method ............................................................................................................................... 119
FAST Method Event and Action Definitions............................................................................................................... 121
Additional Features.................................................................................................................................................... 123
Hardware Calibration Procedures ................................................................................................................................. 123
Calibration Procedure for SC-models: 2, 2DX, E2, 4, 4DX, E4 ............................................................................... 123
Advanced Rack Calibration Procedure for SC-models: 2, 2DX, E2, 4, 4DX, E4....................................................... 124
Calibration Procedure for SC-models: 8, 8DX, 14, 14DX........................................................................................ 125
Advanced Rack Calibration Procedure for SC-models: 8, 8DX, 14, 14DX .............................................................. 127
Maintenance .................................................................................................................................................................. 129
Preventive Maintenance for SC FAST Systems (TN090928 Rev1) ............................................................................. 129
Maintenance for P-Series FAST Valve ........................................................................................................................ 130

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 Maintenance for Multi-Position Valve....................................................................................................................... 134
Maintenance for High Flow FAST Valve ..................................................................................................................... 138
Technical Notes.............................................................................................................................................................. 142
ESI Wash Solution Setup [CLN-T-250] (TN140505) .................................................................................................... 143
Setting Background Services Priority (TN050808-R1)................................................................................................ 145
Elevating Priority of ESI SC (TN030808) ..................................................................................................................... 147
USB Cable Length Specification (TN140425) ............................................................................................................. 148
Loss of GPIB Communication on PE Elan Configuration (TN110609) ........................................................................ 149
Preventive Maintenance for SC FAST Systems (TN090928 Rev1) ............................................................................. 156
Proper Venting & Exhaust of SC FAST Systems (TN090925)...................................................................................... 151
Backup of Key ESI SC Files (TN091001-R1)................................................................................................................. 152
Updating ESI SC Software (TN110610-R1) ................................................................................................................. 153
SC-DX Probe Arm Realignment Guide (TN110518-R1) .............................................................................................. 154
Configuring SC-Exact (TN141111-R1)......................................................................................................................... 157
Access to Micro96 and Micro48 in PlasmaLab (TN010906) ...................................................................................... 158
Access to MT24G in PlasmaLab (TN120709) ............................................................................................................. 158
Access to SC-14 Racks in PlasmaLab (TN120814) ...................................................................................................... 159
Communication Loss in PlasmaLab (TN200807) ........................................................................................................ 160
Using Custom MAP Files in iTEVA (TN110225) .......................................................................................................... 161
Custom Racks in Thermo Element & Neptune (TN160807-R1) ................................................................................. 166
Using a GPIB-232CV-A with ESI SC (TN060406) ......................................................................................................... 168

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Introduction
The SC-Series of autosamplers are clean, high-speed sample changers capable of holding a wide variety of sample
racks and vials in a flexible layout for ICP-AES and ICP-MS systems. The sample changers range from the SC-2, which
can accommodate up to two industry standard autosampler racks or 4 micro racks on the same platform, to the SC-
14, capable of holding up to 14 standard autosampler racks. A Windows compatible program allows different
operators to save and recall their personal settings, including variable x-y-z motion controls that allow for both high
speed analyses and slow probe retraction with viscous samples.

The modular sample platform accommodates different rack sizes and patterns while providing the flexibility to run
samples of various volumes within a single run to maximize throughput. A “manual” sampling position for non-
traditional containers and urgent samples is included, as well as standards locations. The linear and polar motion of
the sampling arm allows for simultaneous movement in the X-Y coordinates providing rapid sample changeover of
approximately 3 seconds. The auto-zero-location feature before each rinse ensures no missed vials, and the encoder
option ensures the location of the sample arm is always known, even when accidentally obstructed.

Blank contamination at the rinse station is minimized through the use of a gravity-fed or pressurized rinsing system,
utilizing two metal-free valves to control the dual flowing rinse solutions. The first rinse station may contain a
solution which rapidly removes the previous sample from adhering to the sample introduction system, e.g. a strong
acid or surfactant solution. The second rinse station normally could contain a clean solution to reduce the instrument
blank.

The SC-Series of autosampler may also be configured to utilize an external peristaltic pump or internal diaphragm
pump to deliver the rinse solution to one or both rinse stations.

The use of a rigid carbon fiber supported Teflon™ encapsulated sample probe allows for the elimination of a probe
guide, removing a major source of cross-contamination from sample to sample.

Productivity is increased primarily by the innovative rack layout, probe design, and intelligent operating system. The
motor assemblies are mounted underneath the sample tray to prevent contamination of the samples while ensuring
quick and accurate sampling. The onboard microprocessor and other electrical components are sealed to prevent
corrosion from acid vapors and spills.

An all-fluoropolymer flow path construction ensures both acid and solvent resistance. An optional enclosure is
available to reduce contamination from external sources.

Description
The ESI SC system can be integrated with most common instruments through the use of the SC emulation. The
emulation will allow the user the ability to employ use of the FAST system to increase throughput, or to simply use
the SC as a “clean” autosampler.

Requirements
Operating Systems: Windows XP (SP3), Windows Vista, Windows 7, Windows 8, Windows 8.1

ESI SC is a 32-bit application that is compatible with both x86 and x64 platforms.

Computer Disk Space: 150MB

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Computer Memory: 512MB minimum depending on OS and host instrument software.

Serial Ports: One additional serial port (USB or DB9), required for most applications. Two ports are required if a GPIB
interface is required (e.g. PE Elan).

Space Requirements:
SC-DX: 33cm x 22cm x 39cm (LxWxH).
SC-2DX: 54cm x 28cm x 46cm (LxWxH).
SC-4DX: 76cm x 28cm x 46cm (LxWxH).
SC-E2DX: 79cm x 54cm x 49cm (LxWxH) approximately.
SC-E4DX: 79cm x 79cm x 49cm (LxWxH) approximately.
SC-8DX: 80cm x 55cm x 122cm (LxWxH).
80cm x 55cm x 137cm (LxWxH) with enclosure and legs extended.
SC-14DX: 114cm x 57cm x 122cm (LxWxH).
114cm x 57cm x 137cm (LxWxH) with enclosure and legs extended.

Power Cord Set Requirements: The power cord supplied with the SC-Autosampler meets the requirements of the
country where you purchased the system. Always use approved power cords to prevent injury or electric shock.

Rinse Requirements: Gravity fed supply requires a shelf capable of holding 2 x 2 L containers (4Kg when full) located
approx. 15cm above the sample changer. Pressurized supply requires a supply of an inert gas (N2 or Ar) at 2 – 4psi.

Required Tools: The following tools will be required to install the SC-E2 autosampler.
2mm hex driver
4mm hex driver
5mm hex driver
Cross head / Phillips screwdriver

Supported Configurations: Your ICP should be in proper working order before installing the SC-Autosampler. See the
section; Hardware Installation for a complete listing.

How It Works
The ESI SC system works actively to control the SC hardware and respond to the host instrument. Refer to
illustrations Figure 1, Figure 2, and Figure 3 that identify the ESI SC software as the mediator between the Instrument
Control Software, (host) and the ESI hardware. The ESI hardware may include the FAST controller. Please refer to
section Hardware Installation for a description of the supported instrument and autosampler configurations.

Additionally, the SC system may provide the user with some additional flexibility depending on the host software and
autosampler used. These additional features may include:

 The ability to mix rack types where previously the host & autosampler configuration was limited to a fixed
layout of rack types. For instance, a limited selection of tray files may have required that all racks be of the
same type; all 21-position racks or all 60-position racks.

 Custom Racks.

 I/O control through the use of the FAST method features.

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 Figure 1: Basic Control Diagram, Type A.

Figure 2: Control Diagram, Type B.

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 Figure 3: Control Diagram, Type C.

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Getting Started
Software Installation
Install the ESI SC software using the CD provided with the system. This should be done while logged in with
Administrator Privileges. The Installer will automatically start and provide instructions during the installation. If the
Installer does not begin automatically, open Windows Explorer, navigate to the CD and double-click on the file
[Link] to begin installation. Be aware that during the start of the install, periods of apparent inactivity may occur
while the installer determines the computer's configuration. Please wait while this process takes place.

Communication & Software Configuration

Please locate the required hardware installation steps as required by your system. Please note that your host
software, which controls the instrument, may have more than one type of connection option.

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Agilent ChemStation and SC Autosampler

Software Installation:

1) Log on to the Agilent’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Determine the type of connection to be used. If the ISIS component is present, the second connection option
will be required. See Figure 5.

Figure 4: Connection option for ChemStation & ESI SC with SC autosampler

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 Figure 5: Connection option for ChemStation w/ISIS & ESI SC with SC autosampler.

“Type A”: The first diagram Figure 4, shows a system that does not include the ISIS. One USB port is used
along with a virtual port created in the ESI SC software.

“Type C”: The second diagram Figure 5, shows a system that includes the ISIS controller. One RS-232 port is
used by the ESI SC software to redirect the communication back to the host computer and control the SC
Autosampler.

3) Next, using Start>>Control Panel>>System>>Hardware>>Device Manager>>Ports.

“Type A”: Locate the COM port this is currently used to control the autosampler, typically this is COM1,
and rename to COM9.

To rename a COM port number, right-click on the device then Properties>>Port Settings>>Advanced.

“Type C”: Select the COM ports that will be used to communicate between the ISIS, ESI SC software and
the SC Autosampler. In the example diagram in step 2, COM8 and COM9 are used. Verify that the settings
are 9600 baud, 8 bits, parity none, 1 stop bit, and no flow control. Note that the COM port used to
connect the ISIS to the computer should not be modified and that at least three physical RS-232 ports
should be visible in the Device Manager.

4) Connect auxiliary cables.

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 “Type A”: n/a

“Type C”: Connect COM1 on the ISIS to an available RS-232 port on the computer using a Null adapter
and RS-232 cable.

If a DB-9 port is not available on the computer, a USB-Serial Adapter (SC-0905) may be used. It is recommended
that the same type of adapters be used throughout the system to minimize driver conflicts. The Hardware Wizard
will automatically install the required drivers but they may also be found in the "\Program Files\ESI\ESI
SC\SupportFiles" directory.

5) Connect 24 VDC power to the SC Autosampler. Connect the RS-232 cable from the physical COM port on the
computer to the SC Autosampler control module at COM1.

6) Turn on the SC Autosampler.

Autosampler Configuration:

7) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the ChemStation software
must not be running.

8) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation. Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is Agilent HP 4500/7500.

9) Configuration File: Click the Save File button.

10) In the ESI SC window select Communications>>Configure Communications. Select AutoConfigure to permit
the ESI Software to automatically determine what COM ports are available. When the SC autosampler is
found the appropriate value will be placed in the SC COM Port value.

“Type A”: Verify that Instrument Communication is set to “RS-232-Virtual”. Define the Instrument COM
Port as COM1.

“Type C”: Verify that Instrument Communication is set to “RS-232-Physical”. The Instrument COM Port
should typically be set to something other than COM1 or COM9 and this device number must be visible
in the top window section, “Physical COM Ports”. This connection is connected to the ISIS via the Null
adapter.

Next, click SAVE>>OK>>OK.

11) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

12) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.
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 13) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

14) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.

15) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

16) Exit the Calibration window.

Host Software Configuration:

17) Configure ChemStation by using he configuration program [Link]. Select the ASX-500 as the
autosampler, and then specify the rack layout by selecting Setup.

Figure 6: Configuration view.

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 Figure 7: Rack Type specification.

18) Verify control of the SC autosampler by using the ALS GoTo menu.

Figure 8: ALS GoTo window.

Figure 9: Selecting tube and "GoTo"

If the system cannot connect and initialize the ESI SC autosampler through ALS, please attempt to refresh the
ports using the Agilent I-O Utility that is located in the system tray.

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Agilent MP Expert and SC Autosampler

Software Installation:

1) Log on to the MP Expert’s host computer with an account that has Administrator privileges.
Install the ESI SC software using the CD provided with the autosampler. The Installer will
automatically start and provide instructions during the installation. If the installation does not
begin automatically, using Windows Explorer, navigate to the CD and double-click on the file
[Link] to begin installation.

2) Connect 24 V DC power to the SC Autosampler. Connect the USB cable between the computer
and the SC Autosampler control unit. Turn on the SC Autosampler. See Figure 14.

Figure 10: Connections for SC with MP Expert.

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Autosampler Configuration:

3) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental
Scientific program group.

4) At the instance of the first run of the ESI SC, the program will automatically determine the
correct communications setup. These will be displayed in the status bars at the bottom of the
ESI SC main window.

To manually configure, in ESI SC window select Communication. Verify that Instrument

Communication is set to “Virtual COM Port”. Select AutoConfigure to permit the ESI Software to
automatically determine what COM ports are available. The determined ports can now be saved. Please
note that the SC Autosampler must be powered on. The MP Expert software must not be running.

5) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for
each rack to define rack type.

6) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next,
refer to the bottom line of the ESI SC Software to identify the current status of the
autosampler. If the status does not list “Autosampler Initialized” and “Instrument COM port
Opened”, check connections and COM port settings and retry.

7) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe
travels down from the top of z-axis. Values can be specified by rack/station after
selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for
normal samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the
rinse location. Typically, Rinse 2 time will be set to 0 as the instrument will instruct the
SC when to move to the next location. A value of “-1” in either Rinse 1 or 2 will skip that
station. Additional Flush Time is length of time rinse will continue to flow after the
probe has left that station.

Autosampler Calibration:

8) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler
probe through the arm holder and down through the probe holder. Set depth of probe to
height of table top.

9) Enter the X and Y offset values that were provided with documentation then select Apply
Calibration Offsets.

10) Exit the Calibration window.

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Host Software Configuration:

During installation of ESI SC there are .xml files installed to the default MP Expert directory. If an
alternate installation directory is used the ESI files must be copied to the \Agilent\MP Expert\ directory
from: C:\Program Files\ESI\ESI SC\SupportFiles\MPExpertSupportFiles\

11) MP Expert Software: Open the MP Expert software and set the Autosampler by clicking
File>>Options and selecting the General tab. Next, select the appropriate ESI autosampler you
are using.

Figure 11: Selecting the ESI SC model to be used.

12) To select your racks open your Worksheet, and select the Autosampler tab. Right-click the rack
to be changed and select Rack Type then select the rack you are using, this should match your
selection in ESI SC.

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 Figure 12: Changing rack configuration in MP Expert.

After any reconfiguration of the rack types in the ESI SC software, changing the racks in the MP
Expert software will also be required.

13) MP Expert Software: Verify movement control by first clicking the position and then clicking ‘Move
and Lower Probe’

Figure 13: Manual movement from MP Expert.

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Agilent MassHunter and SC Autosampler

Software Installation:

1) Log on to the MassHunter’s host computer with an account that has Administrator privileges.
Install the ESI SC software using the CD provided with the autosampler. The Installer will
automatically start and provide instructions during the installation. If the installation does not
begin automatically, using Windows Explorer, navigate to the CD and double-click on the file
[Link] to begin installation. Be aware that during the start of the install, periods of
apparent inactivity may occur while the installer determines the computer's configuration.
Please wait while this process takes place.

2) Connect 24 V DC power to the SC Autosampler. Connect the USB cable between the computer
and the SC Autosampler control module. Turn on the SC Autosampler. See Figure 14.

Figure 14: Connections for SC with MassHunter.

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Autosampler Configuration:

3) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental
Scientific program group.

4) At the instance of the first run of the ESI SC, the program will automatically determine the
correct communications setup. These will be displayed in the status bars at the bottom of the
ESI SC main window.

To manually configure, in ESI SC window select Communication. Verify that Instrument

Communication is set to “Virtual COM Port”. Select AutoConfigure to permit the ESI Software to
automatically determine what COM ports are available. The determined ports can now be saved. Please
note that the SC Autosampler must be powered on. The MassHunter software must not be running.

5) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for
each rack to define rack type.

6) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next,
refer to the bottom line of the ESI SC Software to identify the current status of the
autosampler. If the status does not list “Autosampler Initialized” and “Instrument COM port
Opened”, check connections and COM port settings and retry.

7) On the main ESI SC window, verify the rack and rinse parameters.

d. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe
travels down from the top of z-axis. Values can be specified by rack/station after
selecting rack/station graphic.

e. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for
normal samples, 4-5 for high speed.

f. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the
rinse location. Typically, Rinse 2 time will be set to 0 as the instrument will instruct the
SC when to move to the next location. A value of “-1” in either Rinse 1 or 2 will skip that
station. Additional Flush Time is length of time rinse will continue to flow after the
probe has left that station.

Autosampler Calibration:

8) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler
probe through the arm holder and down through the probe holder. Set depth of probe to
height of table top.

9) Enter the X and Y offset values that were provided with documentation then select Apply
Calibration Offsets. Next, select Go To Calibration Point and adjust if required using the
Manually Move Probe buttons and select Set Calibration.

10) Exit the Calibration window.

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Host Software Configuration:

11) MassHunter Software: Open the MassHunter software and configure Hardware by clicking
Mainframe>Communication… and selecting “Use ALS”. Next, select the appropriate
autosampler ‘ASX-520’.

Figure 15: Hardware Configuration view.

12) Select your racks to match what was selected in the ESI SC software.

13) Select the COM port by clicking the Autosampler (ALS) and select ‘Set Communication…’ the
value selected must match the “Instrument COM Port” selected in the ESI SC Software. COM1
is default but may require modification if used by existing devices on computer.

Figure 16: Set ALS Communication

14) Finally, press the “ALS Initialize” button in the MassHunter software.

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 After any reconfiguration of the rack types in the ESI SC software, changing the racks in the
MassHunter software will also be required.

15) MassHunter Software: Verify movement control by using the ‘Select ALS Vial#’. Motion should be
observed when a vial position is selected and the "Go to" button is clicked.

Figure 17: Select Vial

If the system cannot connect and initialize the ESI SC autosampler through ALS, please attempt to
refresh the ports using the Agilent I-O Utility that is located in the system tray.

If connection problems are encountered during operation, run with the following modification to
see if the problem is resolved.

Place MassHunter software in high priority: This can be done by using a batch file and creating a
shortcut placed on the desktop to start MassHunter. The file C:\Program Files\ESI\ESI
SC\Autostart\MassHunter [Link],can should be edited (right-click>>edit) if the current
path “C:\Program Files\Agilent\ICPMH\Bin\” is not correct. The path identified twice in the file,
should reflect where the application "[Link]" is located.

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Bruker Quantum and SC Autosampler

Software Installation:

1) Log on to the Bruker Quantum’s host computer with an account that has Administrator
privileges. Install the ESI SC software using the CD provided with the autosampler. The Installer
will automatically start and provide instructions during the installation. If the installation does
not begin automatically, using Windows Explorer, navigate to the CD and double-click on the
file [Link] to begin installation. Be aware that during the start of the install, periods of
apparent inactivity may occur while the installer determines the computer's configuration.
Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. See Figure 18. Connect 24
VDC power to the SC Autosampler.

Figure 18: Connection options for Bruker Quantum and ESI SC with SC autosampler.

3) Turn on the SC Autosampler.

Rev 1 23
Autosampler Configuration:

4) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental
Scientific program group. Please note that the SC Autosampler must be powered on and the
Bruker Quantum software must not be running.

5) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that

will control the autosampler. Verify that the instrument chosen is Bruker Quantum.

c. Autosampler Type: To enable the ASX-500 emulation, Configure>>Autosampler and

change "Autosampler Type" as required.

6) Configuration File: Click the Save File button.

7) In the ESI SC window select Communications>>Configure Communications. Select

AutoConfigure to permit the ESI Software to automatically determine what COM ports are
available. When the SC autosampler is found the appropriate value will be placed in the SC
COM Port value.

Define the Instrument COM Port as COM6. This will match the COM port chosen in the ESI
Autosampler window of the Bruker software.

Next, click SAVE>>OK>>OK.

8) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for
each rack to define rack type.

9) Click the “Initialize” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the
status does not list “Autosampler Initialized” and “Instrument COM port Opened”, check
connections and COM port settings and retry.

10) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that
probe travels down from the top of z-axis. Values can be specified by rack/station after
selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3
for normal samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the
rinse location. Typically, Rinse 2 time will be set to 0 as the instrument will instruct the
SC when to move to the next location. A value of “-1” in either Rinse 1 or 2 will skip

Rev 1 24
 that station. Additional Flush Time is length of time rinse will continue to flow after
the probe has left that station.

Autosampler Calibration:

11) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler
probe through the arm holder and down through the probe holder. Set depth of probe to
height of top.

12) Enter the X and Y offset values that were provided with documentation then select Apply
Calibration Offsets. Next, select Go To Calibration Point and adjust if required using the
Manually Move Probe buttons and select Set Calibration.

13) Exit the Calibration window.

Host Software Configuration:

14) Configure Bruker Quantum to use ESI as the autosampler and configure the RS-232 settings to
indicate that COM6 is chosen. This will be the same as the Instrument port in the ESI SC
software defined in step 7) .

Figure 19: Preferences, Bruker Quantum configuration window.

15) Configure the Bruker for the number of racks used on your ESI autosampler. The specified
sample racks should match the corresponding rack in the ESI SC software.

16) Verify control using Bruker Quantum>>Window>>Autosampler Control.

Please note that it may be required to create a new worksheet in order for the new settings to be
applied.

Rev 1 25
FIALab and SC Autosampler

Software Installation:

1) Log on to the FIALab host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) One USB port will be used along with a virtual port created in the ESI SC software. See Figure 20.

Figure 20: Connection options for FIALab and ESI SC with SC autosampler.

3) Connect 24 VDC power to the SC Autosampler. Connect the RS-232 cable from the physical COM port on the
computer to the SC Autosampler control module at COM1.
4) Turn on the SC Autosampler.

Rev 1 26
Autosampler Configuration:

5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the FIALab software must not
be running.

6) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation. Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is FIALab.

7) Configuration File: Click the Save File button.

8) In the ESI SC window select Communications>>Configure Communications. Verify that Instrument

Communication is set to “RS-232”. Select AutoConfigure to permit the ESI Software to automatically
determine what COM ports are available. When the SC autosampler is found the appropriate value will be
placed in the SC COM Port value.

The Instrument COM Port should typically be set to something other than COM1 or COM2 and this device
number must not be visible in the top window section, “Physical COM Ports”. In the example from Figure 20,
COM3 is chosen. Next, click SAVE>>OK>>OK.

9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

10) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

11) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Position probe to height of table top.

13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

Rev 1 27
 14) Exit the Calibration window.

Host software Configuration:

15) Locate and open the FIALab software and make the following configuration changes in the Autosampler
window. In this example COM3 was chosen in the “Autosampler Configuration” section.

Figure 21: Serial Port settings in FIALab.

16) Using the FIALab software, select the ESI SC autosampler and Logon using the Autosampler window. Next,
verify that control of the SC Autosampler has been established by moving the SC as shown in the examples
below.

Figure 22: Examples of instructions to move probe.

Rev 1 28
GV Isoprobe and SC Autosampler

Software Installation:
1) Log on to the GV’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. See Figure 23. Connect 24 VDC power to
the SC Autosampler.

Figure 23: Connection options for GV and ESI SC with SC autosampler.

3) Turn on the SC Autosampler.

Rev 1 29
System Settings:
4) Next, using Start>>Control Panel>>System>>Hardware>>Device Manager>>Ports. Locate the COM port this
is currently used to control the autosampler, typically this is COM1, and rename to COM9.

To change a COM port number, right-click on the device then Properties>>Port Settings>>Advanced.

Autosampler Configuration:
5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the GV software must not be
running.
6) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.
a. Autosampler Model: Use the drop down to select the autosampler model.
b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is GV/Micromass.
c. Autosampler Type: Enable the ASX-500 emulation, Configure>>Autosampler and change
"Autosampler Type".
7) Configuration File: Click the Save File button.
8) In the ESI SC window select Communications>>Configure Communications. Select AutoConfigure to permit
the ESI Software to automatically determine what COM ports are available. When the SC autosampler is
found the appropriate value will be placed in the SC COM Port value.
Define the Instrument COM Port as COM1.
Next, click SAVE>>OK>>OK.
9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type. It should be noted that if the SPS3 emulation is used, the Varian configuration may override
the manually selected racks in the ESI SC software and automatically reset them to match the GV.
10) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.
11) On the main ESI SC window, verify the rack and rinse parameters.
a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.
b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.
c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.
Autosampler Calibration:
12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.
13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.
14) Exit the Calibration window.
Host Software Configuration:
15) Configure the GV to use the CetacASX500 as the autosampler by using InletEditor. Select Tools>>Instrument
Configuration>>Instruments.

Rev 1 30
 Figure 24: Inlet Configuration

16) Configure the rack layout using the InletEditor>>View>>CetacASX500 Autosampler window in the GV
software. The specified rack types should match the corresponding rack in the ESI SC software.
17) Verify control using the InletEditor>>View>>CetacASX500 Autosampler window.

Rev 1 31
ICP Manager and SC Autosampler

Software Installation:

1) Log on to the ‘ICP Manager’ host computer with an account that has Administrator privileges. Install the ESI
SC software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Logon to the ‘ICP Manager’ user account if one is used.

3) One USB port will be used along with a virtual port created in the ESI SC software. See Figure 25: Connection
options for ICP Manager and ESI SC with SC autosampler.

Figure 25: Connection options for ICP Manager and ESI SC with SC autosampler.
4) Connect 24 VDC power to the SC Autosampler. Connect the RS-232 cable from the physical COM port on the
computer to the SC Autosampler control module at COM1.
5) Turn on the SC Autosampler.

System Settings:

Rev 1 32
 6) Locate and modify the [Link] file using [Link]. The file is located at the following path. (Modified
values are in bold.)
If instrument is 61e: "C:\Program Files\MAA\IM61\database\".

If instrument is ARL 3560 : "C:\Program Files\MAA\ICP Manager\".

[OPTIONS]

EXCEL_OLE_ENABLED=1
ViewRealTimeScans=1
Sampler=ASX 500

7) Locate and open the [Link] file using [Link]. The file is located at the following path. (Modified
values are in bold.)
If instrument is 61e: "C:\Program Files\MAA\IM61\database\".

If instrument is ARL 3560 : "C:\Program Files\MAA\ICP Manager\".

[Config]
Port =8
InBufferSize=1024
OutBufferSize=1024
Baud=9600
DataBits=8
Parity=0
StopBits=1
SimulationMode=0
MinX=0
MinY=0
MinZ=0
MaxX=4100
MaxY=2700

Rev 1 33
Autosampler Configuration:

8) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the ICP Manager software
must not be running.

9) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.

a. Instrument/Autosampler Emulation. Use the drop-down to select the instrument that will control the
autosampler. Verify that the “Instrument Type” is TJA ICP Manager. The user will then browse for
the location of the “[Link]”.

If instrument is 61e: "C:\Program Files\MAA\IM61\database\sampler"

If instrument is ARL 3560: "C:\Program Files\MAA\ICPManager\Sampler"

10) Configuration File: Click the Save File button.

11) In the ESI SC window select Communication. Verify that Instrument Communication is set to “RS-232”.
Select AutoConfigure to permit the ESI Software to automatically determine what COM ports are available.
When the SC autosampler is found the appropriate value will be placed in the SC COM Port value.

The Instrument COM Port should typically be set to COM8 and this device number must not be visible in the
top window section, “Physical COM Ports”.

Next, click SAVE>>OK.

12) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

13) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

14) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Rev 1 34
Autosampler Calibration:

15) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of table top.

16) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

17) Exit the Calibration window.

Host software Configuration:

18) Using the ICP Manager software ([Link]), select ICP Manager >Windows>Autosampler[ASX 500], right-
click on the left pane and verify that the Properties show the following settings:.

Figure 26: Serial Port settings in ICP Manager.

19) Right-Click on the left pane and verify that "Simulate mode" is not checked. Next, right-click on the left pane
and choose Select tray, and Open the file named ESI [Link]. The vial positions should now be loaded on the
left pane.

20) Verify that control of the SC Autosampler is established. Move SC Autosampler by right-clicking on vial
location in the left pane and select Go to tube.

If communication is not stable or errors such as; "Unexpected response from ASX 500 autosampler" is
encountered, it may be necessary to reduce the priority of the [Link] program to a level below normal. Please
contact ESI for assistance if required.

Rev 1 35
LECO and SC Autosampler

Software Installation:

1) Log on to the LECO’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. Connect 24 VDC power to the SC
Autosampler.

Figure 27: Connection options for LECO and ESI SC with SC autosampler.

3) Turn on the SC Autosampler.

System Settings:

Rev 1 36
 4) Next, using Start>>Control Panel>>System>>Hardware>>Device Manager>>Ports. Locate the COM port this
is currently used to control the autosampler, typically this is COM1, and rename to COM9.

To change a COM port number, right-click on the device then Properties>>Port Settings>>Advanced.

Autosampler Configuration:

5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the LECO software must not
be running.

6) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is LECO.

7) Configuration File: Click the Save File button.

8) In the ESI SC window select Communications>>Configure Communications. Select AutoConfigure to permit

the ESI Software to automatically determine what COM ports are available. When the SC autosampler is
found the appropriate value will be placed in the SC COM Port value.

Define the Instrument COM Port as COM1. Instrument COM Port must be COM1, COM2, COM3, or
COM4 as the autosampler is autodetected by the LECO software.

Next, click SAVE>>OK>>OK.

9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

10) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

11) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Rev 1 37
Autosampler Calibration:

12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.

13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

14) Exit the Calibration window.

Host Software Configuration:

15) Before using the LECO, the ESI SC software must be running and the autosampler initialized. The LECO
software automatically detects whether or not an autosampler is connected and allows rack layout to be
configured when an autosampler is detected.

16) If the ESI SC software and autosampler are configured correctly, the LECO software will automatically detect
the SC autosampler when the LECO software is started and will send the SC autosampler to the HOME
position. To verify control of the SC autosampler, select Window>>Diagnostics in the LECO software.
Choose the appropriate ‘Tray Size’ that matches the SC autosampler rack layout. Select Tray and Tube
number and then press ‘Go’ button and verify that the SC autosampler moves to the correct position.

Rev 1 38
Nu Plasma and SC Autosampler
Software Installation:

1) Log on to the Nu Plasma’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. Connect the Nu Plasma Autosampler
cable from the System Controller to the computer using the Null modem converter supplied. The original
cable from Nu Plasma must be used. See Figure 28.

Figure 28: Connection options for Nu Plasma and ESI SC with SC autosampler.

If a DB-9 port is not available on the computer, a USB-Serial Adapter (SC-0905) may be used. It is recommended
that the same type of adapters be used throughout the system to minimize driver conflicts. The Hardware Wizard
will automatically install the required drivers but they may also be found in the "\Program Files\ESI\ESI
SC\SupportFiles" directory.

3) Connect 24 VDC power to the SC Autosampler. Turn on the SC Autosampler.

System Settings:

4) None required.

Rev 1 39
Autosampler Configuration:

5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the Nu Plasma software must
not be running.

6) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is Nu Plasma. The user will then browse for the
location of the "Autosampler [Link]" and select. Typically, this folder is located in "C:\Nu
Plasma\Instrument Settings\", directory.

7) Configuration File: Click the Save File button.

8) In the ESI SC window select Communications>>Configure Communications. Perform the following steps.

a. Select the Instrument Communication option: “Physical COM Port with controller”

b. Select AutoConfigure to permit the ESI Software to automatically determine what COM ports are
available. When the SC autosampler is found the appropriate value will be placed in the SC COM Port
value.

c. Select the Instrument COM Port where the "Nu Plasma System Control- Autosampler" is connected.

To view the available ports, select Windows Control Panel>>System>>Hardware>>Device Settings or Device
Manager. Click on Ports (COM & LPT). The current hardware settings will be displayed, and the user can then
determine what values need to be set in the Communications window. The only requirement when choosing COM
ports, as in the communication example, is that the only COM numbers 1-4 are available for use between the Nu
Plasma and the Nu Controller.

Next, click SAVE>>OK>>OK.

9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

It should be noted that the NuPlasma requires that all of the selected racks be of the same array type. For
instance all racks should be configured as 3x7 or all should be configured as 5x12.

10) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

11) On the main ESI SC window, verify the rack and rinse parameters.

Rev 1 40
 a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.

13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

14) Exit the Calibration window.

Host Software Configuration:

15) In the Nu Plasma Software, under Autosampler Control, choose the appropriate SC Autosampler.

Figure 29: Autosampler control

16) Using the following Wash Positions in the Nu Autosampler Control, the SC will perform the associated
actions:

Wash Position 1 will send SC to Rinse Station 1.

Wash Position 2 will send SC to Rinse Station 2.
Wash Position 3 will instruct the SC to perform a wash with both Rinse Stations.

Rev 1 41
Nu AttoLab and SC Autosampler
Software Installation:

1) Log on to the Nu AttoLab’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start of
the install, periods of apparent inactivity may occur while the installer determines the computer's configuration.
Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. See Figure 30.

Figure 30: Connection options for Nu AttoLab and ESI SC with SC autosampler.

3) Connect 24 VDC power to the SC Autosampler. Turn on the SC Autosampler.

System Settings:

4) None required.
Rev 1 42
Autosampler Configuration:

5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the Nu AttoLab software must
not be running.

6) Configure the SC Autosampler by selecting Configure>>Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is Nu Plasma/AttoLab. The user will then browse for
the location of the "Autosampler Parameters" and select. Typically, this folder is located in "C:\Nu
AttoLab\Instrument Settings\", directory.

7) Configuration File: Click the Save File button.

8) In the ESI SC window select Communications>>Configure Communications. Select the “Instrument

Communication” type as (Virtual COM Port without controller). Select AutoConfigure to permit the ESI Software
to automatically determine what COM ports are available. When the SC autosampler is found the appropriate
value will be placed in the SC COM Port value.

Define the Instrument COM Port as COM6 as shown in example Figure 31.

To view the available ports, select Windows Control Panel>>System>>Hardware>>Device Settings or Device
Manager. Click on Ports (COM & LPT). The current hardware settings will be displayed, and the user can then determine
what values need to be set in the Communications window. The only requirement when choosing COM ports, as in the
communication example, is that the only COM numbers 1-4 are available for use between the Nu AttoLab and the Nu
Controller.

Next, click SAVE>>OK>>OK.

9) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the bottom
line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

10) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

It should be noted that the NuAttoLab requires that all of the selected racks be of the same array type. For instance
all racks should be configured as 3x7 or all should be configured as 5x12.

11) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.
Rev 1 43
 c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.

13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

14) Exit the Calibration window.

Host Software Configuration:

15) In the Nu AttoLab>>Setup window, configure the correct communication port. In this example, COM6 is used.

Figure 31: COM6 Configured for AttoLab Autosampler and for ESI Instrument port.

16) In the Nu AttoLab Software, under Autosampler Control, choose the appropriate SC Autosampler.

Rev 1 44
 Figure 32: Select autosampler model and manual control.

17) Using the Nu Autosampler Control, verify control of SC autosampler.

Rev 1 45
Perkin Elmer Syngistix-ICP and SC Autosampler

Software Installation:

1) Log on to the Optima’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start of
the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Log on to the Optima user account if one is used.

3) Connect the USB cable from the computer to the SC Autosampler control unit. See Figure 44. Connect 24 V DC
power to the SC Autosampler.

Figure 33: Connections for ESI SC with Optima and SC autosampler.

4) Turn on the SC Autosampler.

Rev 1 46
Autosampler Configuration:

5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group.

6) Verify that “Instrument: Syngistix-ICP” is shown in the bottom status bar. If not shown, perform step below.

a. In the Configure>>Autosampler menu, verify that the correct Instrument/Autosampler configuration is

selected. Perkin Elmer Optima and AS93/ASX 5xx should be chosen.

7) Verify that “SC COM Port: COM#” is shown in the bottom status bar. If this value is identified in red, please
verify that SC is connected to the computer and power ON. Perform step below to manually configure.

a. In the ESI SC window select Communication. Verify that Instrument Communication is set to “Virtual
COM Port”. Select AutoConfigure to permit the ESI Software to automatically determine what COM
ports are available. When the SC autosampler is found the appropriate value will be placed in the SC
COM port value. Next, define the Instrument COM port as COM6 and click SAVE >> OK. Please note that
the SC Autosampler must be powered on and the Syngistix software must not be running.

8) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the bottom
line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

10) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

11) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of table top.

12) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offset(s).
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

13) Exit the Calibration window by clicking “OK”.

Rev 1 47
Host Software Configuration:

14) Verify that Syngistix is communicating properly with the instrument.

15) Close Syngistix and run “Reconfigure” from the “Perkin Elmer Syngistix for ICP” Program Group.

16) Proceed to “Select autosampler model” and choose “ESI” or “ESI with prepFAST” as appropriate and click
Next>.

17) Select the COM6 port then continue through to “Syngistix Configuration Complete.”

18) Start Syngistix and configure the Optima software by using the Instrument>>Devices>> Autosampler window
to select the appropriate Tray type file by clicking the Browse button, then selecting the "ESI_SC" tray file. Next,
save changes by clicking “Apply settings”.

19) Finally, verify control by selecting Instrument>>Devices>Autosampler and moving to a vial position.

20) To designate a position in a method/sequence, all positions are available and may be entered in one of the
following (R)ack and (V)ial formats depending on configuration chosen in the ESI SC software:

a. [RVV]

121 addresses rack 1, vial position 21

196 addresses rack 1, vial position 96

b. [VVV]

121 addresses vial position 121

196 addresses vial position 196

Rev 1 48
Perkin Elmer Syngistix-ICPMS and SC Autosampler

Software Installation:

1) Log on to the Syngistix host computer with an account that has Administrator privileges. Install
the ESI SC software using the CD provided with the autosampler. The Installer will automatically
start and provide instructions during the installation. If the installation does not begin
automatically, using Windows Explorer, navigate to the CD and double-click on the file
[Link] to begin installation. Be aware that during the start of the install, periods of apparent
inactivity may occur while the installer determines the computer's configuration. Please wait
while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler control unit. See Figure 46.
Connect 24 V DC power to the SC Autosampler. Turn on the SC Autosampler.

Figure 34: Connections for SC with Syngistix.

Rev 1 49
Autosampler Configuration:

3) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>All
Programs>>Elemental Scientific program group.

4) At the instance of the first run of the ESI SC, the program will automatically determine the
correct communications setup. These will be displayed in the status bars at the bottom of the
ESI SC main window.

Figure 35: Displayed host configuration and SC detected.

Please note that the SC Autosampler must be powered on. The Syngistix software must not be
running.

5) Click the “Initialize” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status
does not list “Autosampler Initialized” and “Instrument COM port Opened”, check connections
and COM port settings and retry.

Figure 36: Successfully initialized and available to host instrument.

6) In the main window the correct SC autosampler should now be shown, click Select Tray to
choose the desired rack layout. Click on the graphic for each rack to define rack type.

7) On the main ESI SC window, verify the rack and rinse parameters.

g. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe
travels down from the top of z-axis. Values can be specified by rack/station after
selecting rack/station graphic.

h. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for
normal samples, 4-5 for high speed.

i. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the
rinse location. Typically, Rinse 2 time will be set to 0 as the instrument will instruct the
SC when to move to the next location. A value of “-1” in either Rinse 1 or 2 will skip that
station. Additional Flush Time is length of time rinse will continue to flow after the
probe has left that station.

Rev 1 50
Autosampler Calibration:

8) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler
probe through the arm holder and down through the probe holder. Set depth of probe to height
of table top.

9) Enter the X and Y offset values that were provided with documentation then select Apply
Calibration Offsets. Next, select Go To Calibration Point and adjust if required using the
Manually Move Probe buttons and select Set Calibration.

10) Exit the Calibration window.

Host Software Configuration:

11) Syngistix-ICPMS 1.0: Open the Syngistix software and configure by using the
Devices>>Autosampler>>Autosampler Type window and selecting “ESI” or “ESI prepFAST”.
Next, select the available “[Link]” file.

Figure 37: Autosampler Selection window in Syngistix.

If the tray file is not visible, the user may wish to manually select the alternative tray file:

12) The Port value selected must match the “Instrument COM Port” selected in the ESI SC Software.
COM6 is commonly used.

Rev 1 51
 13) Finally, press the “Initialize” button in the Syngistix software.

Please note that after any reconfiguration of the rack types in the ESI SC software, this initialization
step in the Syngistix software will also be required.

14) Verify movement control by using the Devices>>Autosampler>>Probe… Tube positions may be
used only if the Tube Number is populated with values and not “N/A”. Motion should be
observed when a valid tube position is selected and the "Goto Tube #" is clicked.

Figure 38: Autosampler Probe Control in Syngistix.

15) To designate a position in a method or sample list, all positions are available and may be
entered in the following (R)ack and (V)ial format [RRVV].

0121 addresses rack 1, vial position 21

1196 addresses rack 11, vial position 96

0001 addresses standards rack, vial position 1

Rev 1 52
 Figure 39: Example A/S Locations in Sample List

Rev 1 53
Perkin Elmer Elan and SC Autosampler (via GPIB)

Software Installation:

1) Log on to the Elan’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the ICS 4894 to the computer using the provided 25-pin to 9-pin Null Modem Cable. Connect the ICS
4894 to the GPIB communication card or bus. Connect to power source and turn on. It is recommended that
USB-Serial RS-232 converters be used. The Hardware Wizard will automatically install the required drivers
but they may also be found in the "\Program Files\ESI\ESI SC\SupportFiles" directory. See Figure 40.

Figure 40: Connections for SC with Elan and using GPIB interface.

Please refer to Technical Note (TN060406) if the GPIB interface is a NI GPIB-232-CV-A.

If a DB-9 port is not available on the computer, a USB-Serial Adapter (SC-0905) may be used. It is recommended
that the same type of adapters be used throughout the system to minimize driver conflicts.

3) Connect 24 V DC power to the SC Autosampler. Connect the RS-232 cable from the physical COM port on the
computer to the SC Autosampler control module at COM1. Turn on the SC Autosampler.

Rev 1 54
Autosampler Configuration:

4) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>All
Programs>>Elemental Scientific program group.

5) At the instance of the first run of the ESI SC, the program will automatically determine the correct
communications setup. These will be displayed in the status bars at the bottom of the ESI SC main window.

To manually configure, in ESI SC window select Communication. Verify that Instrument Communication is set to
GPIB. Select AutoConfigure to permit the ESI Software to automatically determine what COM ports are available. The
determined ports can now be saved. Please note that the SC Autosampler and the GPIB-Serial Interface must both be
powered on. The Elan software must not be running.

6) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

7) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

8) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

9) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of table top.

10) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

11) Exit the Calibration window.

Host Software Configuration:

12) Elan Software Version 3.3 or earlier: Open the Elan software and configure by using the
Method>>Sampling>>Select...>>Autosampler Type window and selecting “AS-93plus.” Next, select the
appropriate *.try file that will be updated by the SC Software. A shortcut will be available in the "AS-93"
folder that will place the correct path name in the Tray Name field. (e.g. “c:\program files\esi\esi sc\[Link]”).

Rev 1 55
 Figure 41:Autosampler Selection window in Elan.

Elan Software Version 3.4: Open the Elan software and configure by using the
Devices>>Autosampler>>Autosampler Type window and selecting “AS-93plus.” Next, select the appropriate
*.try file that will be updated by the SC Software. A shortcut will be available in the "AS-93" folder that will
place the correct path name in the Tray Name field. (e.g. “c:\program files\esi\esi sc\[Link]”).

Elan Software Version 3.5 (Windows 7): Open the Elan software and configure by using the
Devices>>Autosampler>>Autosampler Type window and selecting “AS-93plus.” Next, select the appropriate
*.try file that will be updated by the SC Software. A shortcut will be available in the "AS-93" folder that will
place the correct path name in the Tray Name field. (e.g. “C:\programdata\esi\esi sc\[Link]”).

If the shortcut is not visible, the user may wish to create a shortcut and place it in the user's Elandata directory.
For example, the shortcut to the "[Link]" file can be placed in the following location if a user has been defined during
the Elan New User Setup: "c:\Elandata_user\Autosampler\AS-93”

13) Finally, press the “Initialize” button in the Elan software.

After any reconfiguration of the rack types in the ESI SC software, this initialization in the Elan software will also
be required.

14) Elan Software Version 3.3 or earlier: Verify movement control by using the Method>>Sampling>> Probe…
The “xyz” features should not be used. Tube positions may be used only if the Tube Number is populated
with values and not “N/A”. Unintentionally instructing the Elan to move to an undefined position will require
restarting the computer. Motion should be observed when a valid tube position is selected and the "Goto
Tube #" is clicked.

Rev 1 56
 Figure 42: Autosampler Probe Control in Elan.

Elan Software Version 3.4 or later: Verify movement control by using the Devices>>Autosampler>>Probe…
The “xyz” features should not be used. Tube positions may be used only if the Tube Number is populated
with values and not “N/A”. Unintentionally instructing the Elan to move to an undefined position will require
restarting the computer. Motion should be observed when a valid tube position is selected and the "Goto
Tube #" is clicked.

15) To designate a position in a method/sequence, all positions are available and may be entered in the following
(R)ack and (V)ial format [RRVV].

0121 addresses rack 1, vial position 21

1196 addresses rack 11, vial position 96

0001 addresses standards rack, vial position 1

Rev 1 57
Perkin Elmer WinLab32 (v 2.2 to 3.3) and SC Autosampler (via GPIB)
Software Installation:

1) Log on to the Optima’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Log on to the Optima user account if one is used.

3) Connect the ICS 4894 to the computer using the provided 25-pin to 9-pin Null Modem Cable (ES-8199-0113).
Connect the ICS 4894 to the GPIB communication card or bus. Connect to power source.

4) Connect 24 V DC power to the SC Autosampler. Connect the RS-232 cable from the physical COM port on the
computer to the SC Autosampler control module at COM1. See Figure 43.

Figure 43: Connections for ESI SC with Optima and SC autosampler.

If a DB-9 port is not available on the computer, a USB-Serial Adapter (SC-0905) may be used. It is recommended
that the same type of adapters be used throughout the system to minimize driver conflicts. The Hardware Wizard
will automatically install the required drivers but they may also be found in the "\Program Files\ESI\ESI
SC\SupportFiles" directory.

5) Turn on the SC Autosampler.

Rev 1 58
Autosampler Configuration:

6) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group.

7) In the Configure>>Autosampler menu, verify that the correct Instrument/Autosampler configuration is

selected. This may also be verified by looking at the status bar at the bottom of the ESI SC main window.

8) In the ESI SC window select Communication. Verify that Instrument Communication is set to “GPIB”. Select
AutoConfigure to permit the ESI Software to automatically determine what COM ports are available. When
the SC autosampler is found the appropriate value will be placed in the SC COM port value. When the GPIB is
found the appropriate value will be placed in the Instrument COM Port value. Click SAVE>>OK>>OK. Please
note that the SC Autosampler and GPIB-RS232 interface must be powered on and the WinLab32 software
must not be running.

9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

10) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

11) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of table top.

13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

14) Exit the Calibration window.

Host Software Configuration:

15) Verify that WinLab32 is communicating properly with the instrument.

16) Close WinLab32 and run “Reconfigure” from the “Perkin Elmer WinLab32” Program Group.

17) Proceed to “Select autosampler model” and choose “AS-93 plus” and click Next>.
Rev 1 59
 18) Select the interface as IEEE-488 (GPIB) and click Next> and continue through to “WinLab32 Configuration
Complete.”

19) Start WinLab32 and configure the Optima software by using the Options>>Autosampler window and verify
the Autosampler Model as “AS-93plus.” Next, select the appropriate Tray Type file that will be updated by
the ESI SC Software by clicking the Browse button, then selecting the "esi tray file". A shortcut will be
available in the "AS-93" folder that will place the correct path name. (e.g. “C:\program files\esi\esi
sc\esi.As93Tray”). Finally, verify connection by selecting System>Diagnostics>Autosampler then
Reconnect>OK. Movement should be verified by selecting Analysis>AutoSampler.

20) To designate a position in a method/sequence, all positions are available and may be entered in one of the
following (R)ack and (V)ial formats depending on configuration chosen in the ESI SC software:

a. [RVV]

121 addresses rack 1, vial position 21

196 addresses rack 1, vial position 96

b. [VVV]

121 addresses vial position 121

196 addresses vial position 196

Rev 1 60
Perkin Elmer WinLab32 (v 3.4 to 4.0) and SC Autosampler (via USB)

Software Installation:

21) Log on to the Optima’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the
start of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

22) Log on to the Optima user account if one is used.

23) Connect the USB cable from the computer to the SC Autosampler control unit. See Figure 44. Connect 24 V
DC power to the SC Autosampler.

Figure 44: Connections for ESI SC with Optima and SC autosampler.

24) Turn on the SC Autosampler.

Rev 1 61
Autosampler Configuration:

25) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group.

26) In the Configure>>Autosampler menu, verify that the correct Instrument/Autosampler configuration is
selected. Perkin Elmer Optima and AS93/ASX 5xx should be chosen.

27) In the ESI SC window select Communication. Verify that Instrument Communication is set to “Virtual COM
Port”. Select AutoConfigure to permit the ESI Software to automatically determine what COM ports are
available. When the SC autosampler is found the appropriate value will be placed in the SC COM port value.
Next, define the Instrument COM port as COM6 and click SAVE >> OK. Please note that the SC Autosampler
must be powered on and the WinLab32 software must not be running.

28) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not
list “Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings
and retry.

29) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

30) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

31) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe
through the arm holder and down through the probe holder. Set depth of probe to height of table top.

32) Enter the X and Y offset values that were provided with documentation then select Apply Calibration
Offsets. Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons
and select Set Calibration.

33) Exit the Calibration window.

Host Software Configuration:

34) Verify that WinLab32 is communicating properly with the instrument.

35) Close WinLab32 and run “Reconfigure” from the “Perkin Elmer WinLab32” Program Group.

Rev 1 62
 36) Proceed to “Select autosampler model” and choose “Cetac” and click Next>.

37) Select the interface as Serial (RS-232) and click Next>.

38) Select the COM6 port then continue through to “WinLab32 Configuration Complete.”

39) Start WinLab32 and configure the Optima software by using the Options> Autosampler window and verify
the Autosampler Model as “Cetac”. Next, select the appropriate Tray Type file that will be updated by the
ESI SC Software by clicking the Browse button, then selecting the "esi tray file". Choose the “esi ASX tray
file” shortcut available in the default tray folder. Finally, verify connection by selecting
System>Diagnostics>Autosampler then Reconnect>OK. Movement should be verified by selecting
Analysis>AutoSampler.

40) To designate a position in a method/sequence, all positions are available and may be entered in one of the
following (R)ack and (V)ial formats depending on configuration chosen in the ESI SC software:

a. [RVV]

121 addresses rack 1, vial position 21

196 addresses rack 1, vial position 96

b. [VVV]

121 addresses vial position 121

196 addresses vial position 196

Rev 1 63
Perkin Elmer WinLab32 (v 5.0-5.3) and SC Autosampler (via USB)

Software Installation:

1) Log on to the Optima’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start of
the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Log on to the Optima user account if one is used.

3) Connect the USB cable from the computer to the SC Autosampler control unit. See Figure 45. Connect 24 V DC
power to the SC Autosampler.

Figure 45: Connections for ESI SC with Optima and SC autosampler.

4) Turn on the SC Autosampler.

Rev 1 64
Autosampler Configuration:

5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. (Configuration steps a. and b. should be done automatically)

a. In the Configure>>Autosampler menu, verify that the correct Instrument/Autosampler configuration is

selected. Perkin Elmer Optima and AS93/ASX 5xx should be chosen.

b. In the ESI SC window select Communication. Verify that Instrument Communication is set to “Virtual
COM Port”. Select AutoConfigure to permit the ESI Software to automatically determine what COM
ports are available. When the SC autosampler is found the appropriate value will be placed in the SC
COM port value. Next, define the Instrument COM port as COM6 and click SAVE >> OK. Please note that
the SC Autosampler must be powered on and the WinLab32 software must not be running.

6) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the bottom
line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

7) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

8) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

9) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of table top.

10) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

11) Exit the Calibration window.

Host Software Configuration:

12) Verify that WinLab32 is communicating properly with the instrument.

13) Close WinLab32 and run “Reconfigure” from the “Perkin Elmer WinLab32” Program Group.

14) Proceed to “Select autosampler model” and choose “ESI” and click Next>.

Note: If a prepFAST configuration is to be utilized, please select as required.

Rev 1 65
 15) Select the COM6 port then continue through to “WinLab32 Configuration Complete.”

16) Start WinLab32 and configure the Optima software by using the Options> Autosampler window and verify the
Autosampler Model as “ESI”. Ensure the appropriate Tray Type file is selected that will be updated by the ESI SC
Software “ESI_SC.EsiTray”. Finally, verify connection by selecting System>Diagnostics>Autosampler then
Reconnect>OK. Movement should be verified by selecting Analysis>AutoSampler.

17) To designate a position in a method/sequence, all positions are available and may be entered in one of the
following (R)ack and (V)ial formats depending on configuration chosen in the ESI SC software:

a. [RVV] – (Default)

121 addresses rack 1, vial position 21

196 addresses rack 1, vial position 96

b. [VVV]

121 addresses vial position 121

196 addresses vial position 196

Rev 1 66
Perkin Elmer NexION and SC Autosampler

Software Installation:

1) Log on to the NexION’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler control unit. See Figure 46. Connect 24 V
DC power to the SC Autosampler. Turn on the SC Autosampler.

Figure 46: Connections for SC with NexION.

Rev 1 67
Autosampler Configuration:

3) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group.

4) At the instance of the first run of the ESI SC, the program will automatically determine the correct
communications setup. These will be displayed in the status bars at the bottom of the ESI SC main window.

To manually configure, in ESI SC window select Communication. Verify that Instrument Communication is set to
“Virtual COM Port”. Select AutoConfigure to permit the ESI Software to automatically determine what COM ports
are available. The determined ports can now be saved. Please note that the SC Autosampler must be powered on.
The NexION software must not be running.

5) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

6) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

7) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

8) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of table top.

9) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

10) Exit the Calibration window.

Host Software Configuration:

11) NexION Software 1.3+: Open the NexION software and configure by using the
Devices>>Autosampler>>Autosampler Type window and selecting “ESI.” Next, select the appropriate *.try
file that will be updated by the SC Software. A shortcut “esi NexION tray file” will be available in the "ESI"
folder that will place the correct path name in the Tray Name field.

Rev 1 68
 Example: WindowsXP, “C:\program files\esi\esi sc\[Link]”

Example: Windows7, “C:\programdata\esi\esi sc\[Link]”

Figure 47:Autosampler Selection window in NexION.

NexION Software 1.0: Open the NexION software and configure by using the
Devices>>Autosampler>>Autosampler Type window and selecting “AS-93plus.” Next, select the appropriate
*.try file that will be updated by the SC Software. A shortcut “esi NexION tray file” will be available in the "AS-
93" folder that will place the correct path name in the Tray Name field.

Example: WindowsXP, “C:\program files\esi\esi sc\[Link]”

Example: Windows7, “C:\ProgramData\esi\esi sc\[Link]”

Rev 1 69
 Figure 48:Autosampler Selection window in NexION.

If the shortcut is not visible, the user may wish to create a shortcut and place it in the user's NexIONdata
directory. For example, the shortcut to the "[Link]" file can be placed in the following location if a user has
been defined during the NexION New User Setup: "c:\NexIONdata_user\Autosampler\ESI”

12) The Port value selected must match the “Instrument COM Port” selected in the ESI SC Software. COM4 or
COM6 are commonly used but may require modification.

13) Finally, press the “Initialize” button in the NexION software.

After any reconfiguration of the rack types in the ESI SC software, this initialization in the NexION software will
also be required.

14) NexION Software : Verify movement control by using the Devices>>Autosampler>>Probe… The “xyz”
features should not be used. Tube positions may be used only if the Tube Number is populated with values
and not “N/A”. Unintentionally instructing the NexION to move to an undefined position will require
restarting the computer. Motion should be observed when a valid tube position is selected and the "Goto
Tube #" is clicked.

Rev 1 70
 Figure 49: Autosampler Probe Control in NexION.

15) To designate a position in a method/sequence, all positions are available and may be entered in the following
(R)ack and (V)ial format [RRVV].

0121 addresses rack 1, vial position 21

1196 addresses rack 11, vial position 96

0001 addresses standards rack, vial position 1

Rev 1 71
SC Emulation and SC Autosampler (via RS-232)

Software Installation:

1) Log on to the host computer with an account that has Administrator privileges. Install the ESI SC software
using the CD provided with the autosampler. The Installer will automatically start and provide instructions
during the installation. If the installation does not begin automatically, using Windows Explorer, navigate to
the CD and double-click on the file [Link] to begin installation. Be aware that during the start of the
install, periods of apparent inactivity may occur while the installer determines the computer's configuration.
Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler control unit. See Figure 50. Connect 24 V
DC power to the SC Autosampler.

Figure 50: Communication Control Diagram

3) Turn on the SC Autosampler.

Rev 1 72
Autosampler Configuration:

4) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group.

5) In the Configure menu, verify that the Instrument/Autosampler configuration is set to SC.

6) In the ESI SC window select Communications>>Configure Communications. Verify that Instrument

Communication is set to “RS-232”. Select AutoConfigure to permit the ESI Software to automatically
determine what COM ports are available. When the SC autosampler is found the appropriate value will be
placed in the SC COM port value. Next, define the Instrument COM port as desired and click SAVE > OK > OK.
Please note that the SC Autosampler must be powered on.

7) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

8) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

9) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

10) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of table top.

11) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

12) Exit the Calibration window.

Host Software Configuration:

13) Any program that can send string instructions via a RS-232 COM port can be used to issue commands. The
settings of 9600, 8, n, 1 should be used. No hardware handshake.

14) The following is a list of allowed instructions. Unless otherwise noted, the response will be “OK:”. No
additional instructions should be sent by host until the correct response is received.
Rev 1 73
 CMD to ESI Response and/or response string (strings to end with carriage return)

RINSE1 Mechanically homes & goes to first rinse. Response: OK:<CR>

RINSE2 Goes to second rinse Response: OK:<CR>

HOME Mechanically homes (sensors), and positions above first rinse. Response: OK:<CR>

HOME,SENSOR Mechanically homes (sensors), no further movement. Response: OK:<CR>

POS=RR,VVV Moves to rack, vial. Response: OK:<CR>

A1ON Turn on Rinse1 device. Response: OK:<CR>

A1OFF Turn off Rinse1 device. Response: OK:<CR>

A2ON Turn on Rinse2 device. Response: OK:<CR>

A2OFF Turn off Rinse2 device. Response: OK:<CR>

STATUS Returns (R)eady, (B)usy, and (E)rror.

UP Moves probe up. Response: OK:<CR>

DOWN=zzz Moves probe to depth(mm): zzz Response: OK:<CR>

STOW Moves to “Stow” position. Response: OK:<CR>

PUMP1=rate Sets rate (uL/min) of PUMP1. For OFF: rate=0, For 1mL/min: rate=1000. Response: OK:<CR>

Pump on at defined rate and off after vol dispense. Units are: uL, ul/min. Response:
PUMP1=vol,rate
OK:<CR>

PUMP1=STANDBY Pump will enter “Standby” mode as defined in IEEPROM. Response: OK:<CR>

Set_rack(RR,rack) Change selected rack configuration Response: OK:<CR>

Rev 1 74
Spectro SAV and SC Autosampler
Software Installation:
1) Log on to the Spectro SAV’s host computer with an account that has Administrator privileges. Install the ESI
SC software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. Connect 24 VDC power to the SC
Autosampler.

Figure 51: Connection options for Spectro SAV and ESI SC with SC autosampler.

3) Turn on the SC Autosampler.

System Settings:
4) None required. See note at end of section.

Rev 1 75
Autosampler Configuration:
5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the Spectro SAV software
must not be running.
6) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.
a. Autosampler Model: Use the drop down to select the autosampler model.
b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is Spectro SAV.
7) Configuration File: Click the Save File button.
8) In the ESI SC window select Communications>>Configure Communications. Select AutoConfigure to permit
the ESI Software to automatically determine what COM ports are available. When the SC autosampler is
found the appropriate value will be placed in the SC COM Port value.
Define the Instrument COM Port as COM5.
Next, click SAVE>>OK>>OK.
9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.
10) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.
11) On the main ESI SC window, verify the rack and rinse parameters.
a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.
b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.
c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.
Autosampler Calibration:
12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.
13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.
14) Exit the Calibration window.
Host Software Configuration:
15) Copy the following file: \Program Files\ESI\ESI SC\Spectro [Link] and paste it in the following Spectro
folder: \Spectro Smart Studio\Smart Analyzer Vision\Script\
16) Using Spectro SAV, configure the rack layout by opening Device Control Parameters >> Autosampler Tray
Definition. Click the Load button and select the Spectro [Link] file. Ensure that this tray layout matches the
rack layout that was selected in the ESI software.

Rev 1 76
 Figure 52: Autosampler Tray Definition Form.

If a change needs to be made in the tray-rack configuration then make the change in the ESI software and
repeat steps 15) through16).

In some cases it may be necessary to modify a configuration file if errors are encountered when attempting to
move to Rack0 locations. Follow these steps to correct this issue:
1. Locate and open the following file using Smart Analyzer Vision Config Edit: \Spectro Smart Studio\Smart
Analyzer Vision\Config\SaiInst_Devices.cfg.
2. Search for [AutoSampler\X-position] and change the MaxValue to 4600.
3. Then, search for [AutoSampler\Y-position] and change the MaxValue to 2900.
4. Click Apply then OK.

Rev 1 77
Element/Neptune and SC Autosampler

Software Installation:

1) Log on to the Element/Neptune’s host computer with an account that has Administrator privileges. Install the
ESI SC software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. See Figure 53. Connect 24 VDC power to
the SC Autosampler.

Figure 53: Connection options for Element/Neptune and ESI SC with SC autosampler.

3) Turn on the SC Autosampler.

System Settings:

Step 5 will be performed automatically but shown below for informational purposes.
Rev 1 78
 4) Next, using Start>>Control Panel>>System>>Hardware>>Device Manager>>Ports. Locate the COM port this
is currently used to control the autosampler, typically this is COM1, and rename to COM10.

To change a COM port number, right-click on the device then Properties>>Port Settings>>Advanced.

Autosampler Configuration:

5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the Element/Neptune
software must not be running.

6) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is Element/Neptune.

7) Configuration File: Click the Save File button.

8) In the ESI SC window select Communications>>Configure Communications. Select AutoConfigure to permit

the ESI Software to automatically determine what COM ports are available. When the SC autosampler is
found the appropriate value will be placed in the SC COM Port value.

Define the Instrument COM Port as COM1.

Next, click SAVE>>OK>>OK.

9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

10) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

11) On the main ESI SC window, verify the rack and rinse parameters.
a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

Rev 1 79
 12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.

13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

14) Exit the Calibration window.

Host Software Configuration:

15) Using the Executive in the Thermo software, configure the rack layout by first selecting the ASX-500 as the
autosampler. The specified rack types should match the corresponding rack in the ESI SC software.

a. In Element then click Save, define a new configuration name, and click OK

b. In Neptune then click the Save Data in Files button: , define a new configuration name, and
click OK

i. After saving you must then click the button to load the new file into your Nepune
softare.

If custom racks are desired, please refer to technical document (TN160807).

Rev 1 80
iTEVA/TEVA and SC Autosampler

Software Installation:

1) Log on to the iTEVA/TEVA’s host computer with Computer Administrator privileges if required. Install the ESI
SC software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Log on to the iTEVA/TEVA user account that will be used for daily operation.

3) Connect the USB cable from the computer the SC Autosampler. See Figure 54. Connect 24 VDC power to the
SC Autosampler.

Figure 54: Connection options for iTEVA/TEVA and ESI SC with SC autosampler.

4) Turn on the SC Autosampler.

Rev 1 81
System Settings:

Steps 5-7 will be performed automatically but shown below for informational purposes.

5) Next, using Start>>Control Panel>>System>>Hardware>>Device Manager>>Ports. Locate the COM port this
is currently used to control the autosampler, typically this is COM1, and rename to COM9.

To change a COM port number, right-click on the device then Properties>>Port Settings>>Advanced.

6) Locate the iTEVA or TEVA install directory depending on the instrument software.

If iTEVA for WindowsXP: Locate the \Program Files\Thermo\iTeva\SysData.

If iTEVA for Windows 7: Locate the \Users\Public\Thermo\iTEVA\Autosamp.

If TEVA: Locate the \SysData folder in TEVA install directory.

Rename existing [Link], [Link], and

[Link] files adding a prefix "orig_".

7) Copy support files.

If iTEVA for WindowsXP: Copy all *.xml files located in \Program Files\ESI\ESI
SC\SupportFiles\iTEVASupportFiles into the \Program Files\Thermo\iTeva\SysData directory.

If iTEVA for Windows 7: Copy all *xml files located in \Users\Public\ESI\ESI

SC\SupportFiles\iTEVASupportFiles into the \Users\Public\Thermo\iTEVA\Autosamp directory.

If TEVA: Copy all *.xml files located in \Program Files\ESI\ESI SC\SupportFiles\TEVASupportFiles into the
\Teva\SysData directory.

8) Start the iTEVA/TEVA Control Center and configure under Tools>>Instrument Options>>Autosampler. Select
Cetac ASX-520 or Cetac and COM 4 as the current sampler. Verify that “Auto Sampler Emulation” is not
checked and click OK.

Rev 1 82
Autosampler Configuration:

9) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the iTEVA/TEVA software
must not be running.

Steps 10-12 will be performed automatically but shown below for informational purposes.

10) Configure the SC Autosampler by selecting Configure>> Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is Thermo TEVA/iTEVA . The user will then browse
for the location of the "[Link]" and select. Typically, this folder is located in:

 iTEVA on Windows XP: "\Program Files\Thermo\iTeva\SysData"

 iTEVA Windows 7: "\Users\Public\Thermo\iTEVA\SysData"
 TEVA: located in the TEVA install directory.

11) Configuration File: Click the Save File button.

12) In the ESI SC window select Communication. Select AutoConfigure to permit the ESI Software to
automatically determine what COM ports are available. When the SC autosampler is found the appropriate
value will be placed in the SC COM Port value.

Define the Instrument COM Port as COM4.

Next, click SAVE>>OK>>OK.

13) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

14) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

15) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Rev 1 83
Autosampler Calibration:

16) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.

17) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

18) Exit the Calibration window.

Host Software Configuration:

19) Using iTEVA/TEVA Control Center>Applications>Analyst>Sequence>Auto-Session>New Autosampler, the

Cetac by ESI choice will be available for the SC model to control. Click OK, a graphic representation of the SC
Autosampler layout will appear.

20) Connect the autosampler using the connect icon . Move SC Autosampler by right-clicking on vial
location and selecting "Go to..." to verify that control is established.

Rev 1 84
PlasmaLab and SC-Autosampler

Software Installation:

1) Log on to the instrument host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the SC-Autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable between the SCDX autosampler and an available USB port on the instrument
computer. See Figure 55.

Figure 55: Connection options for PlasmaLab and ESI SC with SC-Autosampler.

3) Turn on the SC-Autosampler.

Autosampler Configuration:

Rev 1 85
 4) Start the ESI SC Software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC-Autosampler must be powered on and the PlasmaLab software must
not be running.
5) In the main window, select Communication menu option. Select AutoConfigure to permit the ESI Software
to automatically determine what COM ports are available. When the SC-Autosampler is found the
appropriate value will be placed in the SC COM Port value.
Define the Instrument COM Port as COM8.
Next, click SAVE>>OK.
6) In the main window, click the “Initialize Autosampler” button. Refer to the bottom line of the main window
to ensure “Autosampler Initialized” and “Instrument COM port Opened” appears. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.
7) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.
8) In the main window, verify the rack and rinse parameters.
a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.
b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.
c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length
of time rinse will continue to flow after the probe has left that station.

Rev 1 86
Autosampler Calibration:

9) In the main window, select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the
autosampler probe through the arm holder and down through the probe holder. Place the probe in holder so
the tip is just above the top surface of the autosampler.
10) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.
11) Exit the Calibration window by clicking OK.

Host Software Configuration:

12) Using PlasmaLab, configure the rack layout using the Instrument>>Configurations>>Configuration Editor tab
in the PlasmaLab software. Select the Cetac 500 from the Available Accessories & Devices.

 PlasmaLab 2.x: If this device is not present in PlasmaLab 2.0, run the Accessory Wizard and add
the Cetac 500 or Cetac 500ER. The device should be set to COM8, 9600 and the racks should match the
layout of the ESI SC. Please note that if you plan to use more than 4 racks on the SC, the Cetac 500ER
must be used. After configuration, click Next and Finish.
 PlasmaLab 1.x: If this device is not present in PlasmaLab 1.0, choose Instrument>>Accessories then
Add>> the Cetac 500 from the Available Devices. The device should be set to COM8, 9600 and the
racks should match the layout of the ESI SC.

13) In PlasmaLab 2.0, place a check on the Autosampler Accessory to be used and click the icon:

14) Accessory setup and control, click on the Connect and initialize autosampler icon to verify control of
SC-Autosampler.

In PlasmaLab 1.0, select Instrument>>Accessories, then Device Configuration>>Control>>Initialize to verify

control of SC-Autosampler.

If configuring a SC-14 autosampler, please refer to (TN120814)—found by clicking About>>About ESI SC

menu option in the main window or by double clicking on ESI SC [Link] located in "\Program Files\ESI\ESI
SC\SupportFiles".

Rev 1 87
Qtegra and SC-Autosampler

Software Installation:

1) Log on to the instrument host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the SC-Autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable between the SCDX autosampler and a USB port on the instrument computer. See
Figure 55.

Figure 56: Connection options for Qtegra and ESI SC with SC-Autosampler.

3) Turn on the SC-Autosampler.

Autosampler Configuration:

Rev 1 88
 4) Start the ESI SC Software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC-Autosampler must be powered on and the Qtegra software must
not be running.
5) In the main window, select Configure>>Autosampler menu option. Under Instrument Type select “Thermo
VG (Plasma Lab)” from the drop-down options. Then be sure to click “Save File” to save this configuration.
6) In the main window, select Communication menu option. Select AutoConfigure to permit the ESI Software
to automatically determine what COM ports are available. When the SC-Autosampler is found the
appropriate value will be placed in the SC COM Port value.
Define the Instrument COM Port as COM8.
Next, click SAVE>>OK.
7) In the main window, click the “Initialize” button. Refer to the bottom line of the main window to ensure
“Autosampler Initialized” and “Instrument COM port Opened” appears. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.
8) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.
9) In the main window, verify the rack and rinse parameters.
a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.
b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.
c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length
of time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

10) In the main window, select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the
autosampler probe through the arm holder and down through the probe holder. Place the probe in holder so
the tip is just above the top surface of the autosampler.
11) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.
12) Exit the Calibration window by clicking OK.

Rev 1 89
Host Software Configuration:

13) Using Qtegra, open the Configurator program, select the Experiment Configurator tab, then select your
current configuration. Next, drag and drop the Cetac ASX-520 instrument into your configuration. SeeFigure
57 .

Figure 57: Configurator setup.

14) Next, right-click the newly added Cetac ASX-520 and select Edit Settings… here you will configure the default
racks to be used, these must match what was selected in ESI SC. Set the Com Port to COM8 (matching the
“Instrument COM Port” in ESI SC). See Figure 58. Click OK and then Save your new configuration.

Figure 58: Edit autosampler settings.

Rev 1 90
ICP Expert I & II and SC Autosampler

Software Installation:

1) Log on to the ICP-Expert’s host computer with an account that has Administrator privileges. Install the ESI SC
software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. See Figure 59. Connect 24 VDC power to
the SC Autosampler.

Figure 59: Connection options for ICP-Expert and ESI SC with SC autosampler.

3) Turn on the SC Autosampler.

Rev 1 91
Autosampler Configuration:

4) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the ICP-Expert software must
not be running.

5) In the ESI SC window select Communication. Select AutoConfigure to permit the ESI Software to
automatically determine what COM ports are available. When the SC autosampler is found the appropriate
value will be placed in the SC COM Port value.

Next, click SAVE>>OK.

6) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type.

7) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

8) On the main ESI SC window, verify the rack and rinse parameters.

a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

9) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.

10) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

11) Exit the Calibration window.

Host Software Configuration:

12) Configure the ICP-Expert to use the ASX-500 as the autosampler. Select
Options>>Preferences>>Autosampler. This will be the same as the Instrument port in the ESI SC software.
(Note that the Varian ICP Expert can only use COM1 to control the autosampler.)

13) Configure the Varian rack layout using the Sequence>>Autosampler Setup window in the ICP-Expert
software. The specified rack dimension type should match the corresponding rack in the ESI SC software.

Rev 1 92
 14) Verify control using ICP Expert>>Window>>Autosampler.

If communication loss is a problem, please refer to technical document (TN030308 ).

Rev 1 93
ICP-MS Expert and SC Autosampler

Software Installation:

1) Log on to the ICP-MS Expert’s host computer with an account that has Administrator privileges. Install the ESI
SC software using the CD provided with the autosampler. The Installer will automatically start and provide
instructions during the installation. If the installation does not begin automatically, using Windows Explorer,
navigate to the CD and double-click on the file [Link] to begin installation. Be aware that during the start
of the install, periods of apparent inactivity may occur while the installer determines the computer's
configuration. Please wait while this process takes place.

2) Connect the USB cable from the computer to the SC Autosampler. See Figure 60. Connect 24 VDC power to
the SC Autosampler.

Figure 60: Connection options for ICP-MS Expert and ESI SC with SC autosampler.

3) Turn on the SC Autosampler.

Rev 1 94
System Settings:

Step 5 will be performed automatically but shown below for informational purposes.

4) Next, using Start>>Control Panel>>System>>Hardware>>Device Manager>>Ports. Locate the COM port this
is currently used to control the autosampler, typically this is COM1, and rename to COM9.

To change a COM port number, right-click on the device then Properties>>Port Settings>>Advanced.

Autosampler Configuration:

5) Launch the ESI SC software. Click on the desktop icon 'ESI SC’ or select from START>>Elemental Scientific
program group. Please note that the SC Autosampler must be powered on and the ICP-MS Expert software
must not be running.

6) Configure the SC Autosampler by selecting Configure>>Configure Autosampler.

a. Autosampler Model: Use the drop down to select the autosampler model.

b. Instrument/Autosampler Emulation: Use the drop-down to select the instrument that will control the
autosampler. Verify that the instrument chosen is Varian ICPMS.

c. Autosampler Type: Please note that the SPS3 emulation can be used for the SC-2 autosampler only,
the ASX-500 emulation can be used for all autosamplers. To enable the ASX-500 emulation,
Configure>>Autosampler and change "Autosampler Type" as required.

7) Configuration File: Click the Save File button.

8) In the ESI SC window select Communications>>Configure Communications. Select AutoConfigure to permit

the ESI Software to automatically determine what COM ports are available. When the SC autosampler is
found the appropriate value will be placed in the SC COM Port value.

Define the Instrument COM Port as COM1. This will match the COM port chosen in the Varian SPS3 or ASX-
500 Autosampler window of the Varian software.

Next, click SAVE>>OK>>OK.

9) In the main window, click Select Tray to choose the desired rack layout. Click on the graphic for each rack to
define rack type. It should be noted that if the SPS3 emulation is used, the Varian configuration may override
the manually selected racks in the ESI SC software and automatically reset them to match the ICP-MS Expert.

10) Click the “Initialize Autosampler” button on the main window of the ESI SC software. Next, refer to the
bottom line of the ESI SC Software to identify the current status of the autosampler. If the status does not list
“Autosampler Initialized” and “Instrument COM port Opened”, check connections and COM port settings and
retry.

11) On the main ESI SC window, verify the rack and rinse parameters.

Rev 1 95
 a. Probe Down Height: Accessible by clicking on rack images. Displays distance that probe travels down
from the top of z-axis. Values can be specified by rack/station after selecting rack/station graphic.

b. Retraction Speed: Accessible by clicking on rack images. Set: 2 for viscous samples, 3 for normal
samples, 4-5 for high speed.

c. Rinse Settings: Rinse Time defines the amount of time that probe will remain in the rinse location.
Typically, Rinse 2 time will be set to 0 as the instrument will instruct the SC when to move to the next
location. A value of “-1” in either Rinse 1 or 2 will skip that station. Additional Flush Time is length of
time rinse will continue to flow after the probe has left that station.

Autosampler Calibration:

12) Select Calibrate >>Calibrate Autosampler >>Go To Calibration Point. Thread the autosampler probe through
the arm holder and down through the probe holder. Set depth of probe to height of top.

13) Enter the X and Y offset values that were provided with documentation then select Apply Calibration Offsets.
Next, select Go To Calibration Point and adjust if required using the Manually Move Probe buttons and select
Set Calibration.

14) Exit the Calibration window.

Host Software Configuration:

15) Configure the ICP-MS Expert to use the SPS3 or ASX-500 as the autosampler matching the selection in step 6).
Select Preferences>>Accessories and configure the RS-232 settings to indicate that COM1 is chosen. This will
be the same as the Instrument port in the ESI SC software defined in step 8).

Rev 1 96
 16) Configure the Varian rack layout using the Sequence>>Sampling Setup window in the ICP-MS Expert
software. The specified rack dimension type should match the corresponding rack in the ESI SC software. If
using the SPS3 emulation, configure using the 11-position standards rack. (Note position 11 will not be
valid.).

17) Verify control using ICP-MS Expert>>Window>>Autosampler Control.

Rev 1 97
Software Overview
The ESI SC software must be running to enable the use of the SC/FAST system. Additionally, ESI recommends that
the following order for start-up.

Starting order of configuration components:

1) Power on autosampler and any SC modules used.

2) Start the ESI SC software and verify that the SC system is initialized.
3) Start the instrument software.

Main Window
The main window contains following controls which may be used to configure the autosampler racks or
enable/disable the FAST method. Additionally, the status bars will present current configuration information. Please
refer to Figure 61: Main window of ESI SC software. The autosampler graphic will change to reflect the autosampler
configured.

Figure 61: Main window of ESI SC software.

Configuration File: Configuration file currently loaded. All parameter modifications are applied immediately. If
multiple configurations are to be used, create under a new name then modify as desired.

Instrument: Host or control instrument type.

Rev 1 98
Autosampler Model: Identifies the model of ESI SC autosampler.

SC COM Port & Instrument COM Port: Identifies the communication ports used.

FAST Control Enabled: Applies the FAST method as defined in the Configuration File. Refer to FAST menu.

Initialize Autosampler: Establishes communication between the ESI SC software and the SC Autosampler.

Rinse Time: Specifies the amount of time that the probe will spend at the rinse stations, this must not be longer than
the rinse time set in the ICP/ICPMS software. A value of “0” in Rinse 1 will dip the sample probe into rinse station 1
(R1) then proceed to rinse station 2 (R2). If a value of “-1” is entered into rinse time, the sample probe will skip that
rinse station. If FAST is not used, it is recommended to set Rinse2: Rinse Time to “0” thereby allowing the probe to
move to R2 and remain until instructed by host instrument software to move to next sample.

Additional Flush Time: The amount of time the rinse solution will continue to flow after the sample probe leaves the
rinse station.

Rinse/Wash: Will produce a probe rinse operation.

Max Rinse Time: If used, will establish a maximum time limit to any rinse flow. The time value can be set to a value
that is longer than the time required by the ICP/ICPMS to process each sample. In this manner the flushing of the
rinse stations will be controlled by the rinse settings and also shut down at the end of the sample sequence.

Select Tray: Specifies the rack layout.

Rack Configuration
Clicking on the graphic representing each of the racks will permit the user to place a desired rack from a given list as
shown in Figure 62. When placing the chosen rack onto the image of the autosampler, options will be available
depending on emulation and autosampler. Choices/settings available through the Rack window will include:

 Specification of the Retraction Speed for the rack. This is the speed of the probe as it retracts from the
sample. A lower number is selected for viscous samples, while a higher number is used for rapid analysis.

 Specification of probe Down Height (probe depth). Heights can be independently set for the rinse station,
standard positions and each rack.

For micro-volume samples, be sure to adjust the z-rail depth appropriately so that the sample probe is able to
draw up the required sample: Click on Manual menu at top of main window in SC software. Select the rack number
and vial number for the desired position and then click on Move To Position box. Once the sample probe arrives at
the chosen position, click on +Z, or -Z to move the sample probe tip to the proper depth in the well. Once the
appropriate height is acquired, click on Set Probe Down Height. This new depth setting is applied to the entire rack.
If this depth is desired for all racks, check the Apply To All Racks box.

Rev 1 99
 Figure 62: Rack Setup Window and settings.

Menu Items
The main window provides access to the following windows or selections:

File
This menu will allow the user to open or save a configuration file as well as close the application. The configuration
files will permit the user or users to save multiple configuration files that contain information regarding rack layout
and FAST method settings.

Calibrate
Once initialized, the calibrate menu will be available. It is necessary to calibrate the sampler arm before using the
autosampler to ensure that the sample probe will locate the center of the vials. See Figure 63.

Rev 1 100
 Figure 63: Calibration Window.

Go to Calibration Point: Commands the probe to move to last saved calibration position.

Set Calibration: Saves current probe position as the new calibration point.

Horizontal: The +20X and –20X buttons apply coarse adjustments to the probe location along the x-axis. The +X and
–X buttons apply fine adjustments.

Rotational: The +10Y and –10Y buttons apply coarse adjustments to the probe rotational position. The +Y and –Y
buttons apply fine adjustments.

Vertical: The +10Z and –10Z buttons apply coarse adjustments. The +Z and –Z buttons apply fine adjustments to the
probe z-axis position. (WARNING: the sample probe may be damaged if lowered below the shelf surface.)

Calibration Offsets: Values used by the software to properly position the probe, accounting for mechanical and
positional variances. These values are automatically entered by the computer when the Set Calibration button is
pressed or the values may be manually entered and applied using the Apply Calibration Offset(s) button.

Probe Length: Establishes the probe length used. Standard length is 150mm.

Rinse Position Offsets: Secondary calibration procedure to ensure that the probe enters the center of the rinse
stations.

Rev 1 101
Manual
The Manual Movement window allows users to manually move the probe to a desired location on the autosampler
as well as adjusting the X, Y, and depth position of the sample probe. See Figure 64.

Figure 64: Manual Window.

The controls available through this window include:

Rev 1 102
Horizontal: The +20X and –20X buttons apply coarse adjustments to the probe location along the x-axis. The +X and
–X buttons apply fine adjustments.

Rotational: The +10Y and –10Y buttons apply coarse adjustments to the probe rotational position. The +Y and –Y
buttons apply fine adjustments.

Vertical: The +10Z and –10Z buttons apply coarse adjustments. The +Z and –Z buttons apply fine adjustments to the
probe z-axis position. (WARNING: the sample probe may be damaged if lowered below the shelf surface.)

Rack Number & Vial Number: Allows a rack & vial location to be accessed by use of the Move to Position button.

Probe Down Height (mm): Displays of the current height of the z-axis arm.

Set Probe Down Height: Updates the Probe Down Height (mm) for the specified rack(s). This will apply the current z-
axis depth to the rack. Checking the Apply To All Racks, will set this as the depth for all racks used. This setting will be
reflected on the main window.

Flush Rinse Stations: Used to flush the rinse stations. Typically used before starting a run, or changing rinse solution.
Enter time in seconds in both the Flush 1 and 2 time boxes.

Go To Rinse1 & Go To Rinse2: Moves the sample probe into the rinse stations.

Perform Rinse/Wash: Moves the probe through the configured wash operation.

FAST Controls: Provides access to controls defined in the FAST. Some models will provide additional tabs depending
on installed devices.

Go Home: Moves the sample probe to the home position above rinse station.

Stow: Moves the autosampler probe away from all samples.

Up: Raises the probe arm.

Down: Lowers the probe arm.

Outputs: Allows manual control of ECU outputs A1, A2, and A3.

For micro volume samples, be sure to adjust the z-rail depth appropriately so that the sample probe is able to draw
up the required sample: Click on Manual tab at top of main window in SC software. Click on rack number and vial
number for the desired position and then click on Move To Position box. Once the sample probe arrives at the tube
position, click on +Z, +ZZ, +ZZZ to move the sample probe tip to desired depth. Once the appropriate height is
acquired, click on Set Probe Down Height. This new depth setting is applied to the entire rack. If this depth is desired
for all racks, check the Apply To All Racks box.

Configure
This menu will allow configuration of devices on the system.

Configure>> Autosampler

Rev 1 103
This window allows users to specify the control instrument and autosampler emulation. Additionally, the user also
has access to speed settings for the sample arm and probe.

Figure 65: Configure Autosampler Window.

Configuration File Name: Indicates the name of the current autosampler configuration file. Saved files may be
loaded by clicking on the “Open File” button and selecting the desired configuration file. To save any changes made
to an existing file, click on the “Save File” button. To save a configuration under a new name, enter the name in the
text box, then press the “Save File” button.

Auto Initialize: Enable to set the ESI SC to automatically initialize the SC autosampler when the program is started.

Autosampler Model: Indicates the current autosampler model being used. A drop-down menu allows users to select
a different autosampler.

Instrument Type: Drop down menu lists the control instruments available.

Autosampler Type: Drop down menu identifies the autosamplers and/or conventions that are available for the
chosen instrument.

Start Speed: Axis starting and stopping speed when moving sample probe. (1=slow, 5=fast)

Rev 1 104
Max Speed: Maximum axis speed when moving sample probe. (1=slow, 5=fast)

Accel/Decel: Rate at which movement changes speeds. (1=slow, 5=fast)

High Speed (HS): Depending on the autosampler, faster mechanical speeds may be possible. It is recommended to
check this box if the serial number for the SC autosampler includes “HS” or “DX”. For example, “X4-HS-SP…”

Enable RAF: When the Rotational Approach Function (RAF) is enabled, the approach to each position is adjusted by a
small approach movement. This feature improves precision when accessing small tubes.

Rail Height: Depending on the autosampler, the configuration may require a different setting for the vertical travel
of the probe. The configured length can found in the serial number. In this example the vertical rail length is 18, “X4-
HS-SP-18-…”

Configure>>Syringe
Configurations can be set for systems equipped with FAST syringes. See Figure 66.

Figure 66: Configure Syringe window.

Syringe Type: Permits the selection of the syringe type. Options include syringe size, and selection for a continuous
duty pairing.

Syringe Fill Rate: Enter value desired.

Syringe Dispense Rate: Enter value desired.

Enable Syringe: Enables or disables the Syringe device.

Enable Stand Alone Syringe Control: Enables the operation of syringe device(s) on systems without SC.

Enable Syringe COM Port: Specifies separate COM port address for Syringe(s) Control.

Syringe Manual Control: Will permit operation of syringe and syringe valve.

Syringe Initialize Parameters: Setting of Initialize Rate and specification of initial position of syringe when FAST
system is initialized. Options included “Fully Dispensed”, “Fully Filled”, and “No Movement”.

Syringe Priming Parameters: Setting of Priming Cycles and rate.

Rev 1 105
Configure>>SCexact
Future use.

Configure>>I/O Device
Advanced operations. Please consult application specific documentation.

Configure>>Multi-FAST
This window permits the addition of “sample” positions for supported emulations. During the analysis sequence,
each of the valves will be placed in the position as defined in the table. The entry labeled “Default” specifies the
valve positions for sample positions not defined in the table. Since the FAST valve may be used for a normal analysis,
a default position is not required.

Please note that functionality of this window may be limited depending on the instrument’s ability to add
custom positions to the tray configuration.

In the following example, positions (0,50) through (0,53) will be added to the tray file used by the instrument. When
samples other than those listed are to be analyzed Valve 1 and Valve 2 will be in positions 1 and 1 respectively.
When position (0,52) is to be analyzed, the FAST valve will be placed in the Load position or position 2. Valves 1 and
2 will each be placed in positions 4 and 2 respectively. See Figure 67.

Rev 1 106
 Figure 67: Multi-Port Valve Configuration window.

Configure>>prepFAST Offline
This window permits users access to running prepFAST Offline methods. Please refer to specific offline manuals for
operation.

Configure>>prepFAST Inline
This window permits users access to prepFAST Inline configurations. When the system configuration is selected, it is
necessary to click on “Initialize” on the main window to apply the new settings. The absence of configuration options
in this window may indicate that the necessary hardware is not present for the system. See Figure 68.

Rev 1 107
 Figure 68: prepFAST Inline system configuration

Diagnosis
This menu provides access to information that will assist ESI technical personnel in troubleshooting the SC system.
Additionally it will provide access to the “Index” operation that may be used to verify that a 2-position valve is
properly aligned.

Communication
This window, Figure 69, will provide access to manual and automatic configurations for the SC system.

Rev 1 108
 Figure 69: Configure Communication Window.

SC Autosampler Communication Port: Identifies the physical COM port where the SC autosampler is connected.

Instrument Communication Port: Identifies the physical or virtual COM port that the host (instrument) software uses
to communicate to the ESI SC software.

Instrument Communication: Indicates the type of communication connection used. Depending on the emulation
used, this option may not be available.

AutoConfigure: Clicking this button will allow the ESI SC to attempt to automatically configure the communication
ports. However, not all instruments can be configured in this manner alone.

FAST
This window provides access to the FAST method assigned to the current SC configuration. The following controls
are available to the user. See Figure 70.

1) A method can be opened or saved using the File menu.

2) Method File Name identifies the name of the current FAST method.

3) A FAST Method can be created by “Drag-and-Dropping” from the Events and Actions listings.

4) Rinse Time (sec) shows how long the probe will stay at the rinse station(s).

5) Enable FAST Control will activate or de-activate the FAST method from executing when instructions are
received from the instrument. If not checked, the autosampler will behave as instructed by the instrument
and no FAST features are enabled.

6) Max Vacuum Time (s) is the time limit that the vacuum will remain on at the end of an analysis sequence.

Rev 1 109
 7) FAST Control will allow the user to manually operate the FAST valve and vacuum.

Figure 70: FAST method window.

Additional controls for syringe operations and I/O Device settings are available in assorted tabs.

About
The About menu will contain information regarding version number and will also provide access to help documents.

FAST Method Design

FAST methods enable advanced, customized automation for maximum sample introduction flexibility
and utility. Understanding how a FAST method works and how to create or modify FAST methods allows
laboratories to achieve maximum benefit from the FAST system. FAST automation includes but is not
limited to the following devices:

 Valves  Peristaltic Pump

 Diaphragm Pumps  Customizable I/O
 Syringe

Rev 1 110
How a FAST Method is Activated
If the FAST is enabled through the ESI SC software, the current FAST method will be active any time an ICP/ICPMS
instrument sends the SC probe to a location.

How a FAST Method is Defined

FAST methods have three basic components: Events, Actions, and Parameters. When an Event occurs, any and all
Actions associated with that event, in the FAST method, will occur. Some Events and Actions have associated
Parameters, which provide the software with essential information about that Event or Action. For example, Actions
such as timers have parameters that set the length of the timer.

FAST methods are built by drag-and-drop from the list of Events and Actions. If an Action or Event requires a
parameter, type it in the appropriate column.

FAST methods are written by assigning an Action to an Event, and therefore it is not required that the list be written
sequentially. For example, the following two methods will perform identically:

Method 1:

Method 2:

In both of these FAST methods, when the ICP/ICPMS instrument sends the SC probe to a location (Event: On Probe
Down), valve 1 is switched to load (Action: Load1) and Timer A is started (Action: Timer A). When Timer A expires
(Event: Timer A Expires), then valve 1 is switched to inject (Action: Inject1).

Basic FAST Method

A typical sample analysis will consist of a FAST method as outlined in Method 3 below.

Rev 1 111
 Method 3: Basic FAST Method

The arrangement of the FAST method associates corresponding Actions in the second column, to Events defined in
the first column. Parameters if required, can be entered/modified in the third column. In the example from Method
3, the following lines result in the following actions or movements of FAST components:

a) When the host instrument instructs the probe to move down into sample (On Probe Down), the vacuum will
turn on (Vacuum1 On) and the FAST Valve will move to the Load position (Load1).

b) When the probe reaches the bottom of the sample tube (Probe In Sample) a timer is started that will expire
after 10 seconds, (Timer A)(10).

c) When (Timer A Expires) the FAST Valve will move to the Inject position (Inject1) and the autosampler will be
instructed to wash/rinse the probe, (Move Rinse).

d) When the autosampler has finished the wash/rinse, (Rinse Completed), the autosampler will be instructed to
move over the next predicted sample tube (Move Next).

e) When the host instrument sends a wash/rinse instruction (On Rinse), the FAST valve will move to the Load
position (Load1).

When using this method it is important to verify that the wash/rinse time in the ICP/ICPMS is long enough to allow
the sample loop to evacuate completely.

Typical Sample Analysis

The typical sample analysis will consist of configuring the loading and injecting of a loop of sample to the nebulizer.
In addition, the FAST software will manage the operations of the FAST valve, vacuum, and autosampler, while
synchronizing to the control of the host software that manages the instrument. The two basic arrangements of the
system and liquid flow paths are illustrated in the following diagrams.

Rev 1 112
 Figure 71: Load position.

At the beginning of a sample analysis, the vacuum will rapidly draw sample through the autosampler probe and Load
the loop. At the same time the instrument’s peristaltic pump will advance clean carrier solution to nebulizer.

Figure 72: Inject Position.

With a full loop of sample, the valve will then be switched to the Inject position where the clean carrier will advance
the sample volume to the nebulizer via the peristaltic pump and therefore to the instrument to be analyzed. In a well
configured system the FAST valve will be positioned as close as possible to the nebulizer therefore reducing the time
necessary for the sample to arrive at the nebulizer.

The resulting benefits to a sample analysis due to the implementation of the FAST can include the following:

1) Reduced sample analysis time. Refer to Figure 73: Example of reduced analysis time. Shown is an example of
how the analysis time is reduced.

2) Reduced instrument maintenance. Since the sample loop is the only sample volume that is presented to the
spray chamber, system maintenance /cleaning is reduced since less “dirty” sample material will deposit on
surfaces such as cones.
Rev 1 113
 Figure 73: Example of reduced analysis time.

Tuning the Instrument when connected to FAST

If the instrument requires routine calibration, this can be accomplished by moving the carrier probe from the carrier
solution and placing it in the “tuning” solution. Simply place the probe back into the carrier in preparation for sample
analysis. Note: It is recommended to wipe and place the probes in rinse solution momentarily to reduce
contamination of solutions.

Important Design Criteria for a Basic FAST Method

The following should be considered when improving performance and increasing throughput with the use of the
FAST system.

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The basic elements of a sample analysis consist of 1) autosampler movement, 2) sample uptake time, 3) stabilization
time, 4) measurement time, 5) instrument overhead time, and 6) rinse/wash time. The FAST system can reduce
sample analysis time by efficiently transporting the sample to the nebulizer and simultaneously rinsing the transport
line and probe while the instrument is analyzing the sample.

Use the smallest loop possible that will provide enough sample volume for analysis.

Higher sample throughput and shorter sample analysis times require the selection of a loop that will both provide an
adequate sample volume for measurement and be as small as possible to reduce loading time and rinse times.

Setting Read-Delay
The optimum “Read-Delay” should be determined so that the ICP method can start measurements as soon as the
signal intensity has stabilized. The effective “Read-Delay” time in the instrument method should be long enough to
permit the following sequence of events to occur:

a) Loop Load time in the FAST method,

b) Sample travel time from valve to nebulizer,
c) Signal stabilization time.

Figure 74: Signal Intensity during FAST method.

The start of the “Read-Delay” is when the instrument is signaled by the FAST that the probe has reached the bottom
of the sample vial. The length of “Read-Delay” should be set so that the data acquisition starts when the signal has
stabilized. This example diagram, (Figure 74), represents a series of 13 replicates used to determine when the signal
intensity has stabilized. If each replicate is 1 second long and the first starts 4 seconds after the probe has entered
the sample vial, it is reasonable to consider a “Read-Delay” of approximately 6 seconds so that the first replicate for
an analysis starts when the signal has stabilized. The example diagram also indicates that there is approximately 8
seconds of stable signal for analysis.

Rev 1 115
Setting Wash/Rinse Time
It is important to configure the ICP/ICPMS wash/rinse time to be sufficiently long so that the following two actions
occur:

1) When the wash/rinse instruction is received from the host instrument, the valve will switch to Load and the
loop will evacuate.

2) The MoveNext action should occur, placing the probe above the next predicted sample before the
wash/rinse time expires.

Rev 1 116
Procedure for Qualification of a Basic FAST Method
The following procedure provides an approach to validating the Basic FAST Method. The application of this
procedure will likely extend to most FAST Methods.

1) With the FAST Valve in “Load” position, place the Carrier probe in tuning solution. Tune the ICP.

NOTE: When tuning is finished, wipe off the probe, flush it momentarily in rinse solution, and then place the
probe back into the carrier solution.

2) In continuous mode, run a sample and note the time from when the probe reaches the bottom of the sample
vial to the time of signal stabilization. (This will be the Effective Read Delay.)

3) Ensure that the “Analysis Time Available” is adequate for your ICP method. If not, then an adjustment of loop
size must be made.

NOTE: A change in loop size will likely require a change in sample loading time, thus changing your “Effective
Read Delay.”

4) Apply the effective read delay in your ICP method so that the first replicate is acquired after a stable signal
has been achieved.
5) Wash/Rinse time should be approximately 3-5 seconds (depending on FAST Method), to ensure that the
sample loop is evacuated and FAST Method is completed prior to the ICP’s request for the next vial location.

Rev 1 117
 Note: When the Valve switches back to “Load” at the end of an analysis, a sharp drop should be seen in
Continuous Mode.

6) Run a series of 6 samples, 3 high standards followed by 3 blanks. The high standards will have good RSD if the
read delay and loop size are correct. Verify at least 2,000x washout is observed in the first blank and 10,000x
washout is observed in the second blank compared to the high standard.

Samples not run in Continuous Mode.

Rev 1 118
Loop Rinse Toggle (LRT) Method
An additional rinsing mechanism can be employed when it is desired to further reduce carry-over. The additional
rinsing step shown below (Figure 75) will circulate additional rinsing solution after the Sample Injection.

Figure 75: Loop Rinse

The following method illustrates a modification to the Basic FAST Method (Method 3) in order to add rinsing to the
loop after the ICP/ICPMS has finished acquiring data from the sample.

Method 4: Loop Rinse Toggle.

Rev 1 119
 a) The Action was replaced by a (Move To-R2) so that the resulting move will be that the probe moves up out of
the rinse station and above R2.

b) When the host instrument sends a wash/rinse instruction (On Rinse), the probe will move down into R2
again (Move Into-R2).

c) When the host instrument sends a wash/rinse instruction (On Rinse), a timer is started that will expire in 3
seconds. When this timer expires the valve will move to the Inject position (Inject 1).

d) When (Timer B Expires), another timer (Timer C), is started that will expire in 1 seconds. When this timer
expires the valve will move to the Load position (Load1).

e) When (Timer C Expires), another timer (Timer D), is started that will expire in 1 seconds. When this timer
expires the probe will move to the next sequential vial position (MoveNext).

The following table provides a “starting” set of values when constructing a “Basic” or “LRT” FAST method for typical
samples using a 1.0 mm ID (grey) sample probe and carrier flow rate at 0.8 mL/min. See Table 1.
Table 1: Starting values for FAST method creation.

Basic Method LRT Method

Estimated ICP FAST
Loop ICP Wash FAST Method ICP Wash
Analysis Read Delay Method
Size (mL) Time (s) Timer B (s) Time (s)
Time (s) (Ports 1 & 4) Time (s) Timer A (s) (Loop Rinse)
(Loop Load)

< 10 0.3 14 2 2 1 10
10-25 0.5 15 3 3 1 10
25-60 1 17 5 4 3 12
60-80 1.5 18 8 6 4 13
80-120 2 20 10 8 6 15
120-160 2.5 22 12 8 8 17
160-210 3 25 14 10 8 17
210-300 4 29 18 12 8 17
> 300 Custom Custom Custom Custom Custom Custom

Rev 1 120
FAST Method Event and Action Definitions

Events initiated by ICP/ICPMS:

On Probe Down:
The ICP/ICPMS has told the SC to move the probe to a specific location. The FAST method will always respond to this
instruction from the ICP/ICPMS. If necessary, other FAST instructions will reset at this point.

On Probe Up:
The ICP/ICPMS has told the SC to move the probe up.

On RRVV:
The ICP/ICPMS has sent the SC probe to a location, defined by RRVV (Rack Rack Vial Vial). For example, 1234 will
define tube 34 in rack12.

On Rinse:
The ICP/ICPMS has sent a rinse command to the SC. This Event is important since it is a critical synchronization point
with the ICP/ICPMS. This is often used to initiate an evacuation of the sample loop or to start a loop rinse operation.
An interruption of the FAST method will occur if the ICP/ICPMS sends a rinse instruction to the SC before the
MoveRinse action has been started.

On Rinse Type2:
Similar to On Rinse, however, if this Event is used it will not result in an interruption of the FAST method if the
instrument sends a rinse command before the ESI SC has performed a MoveRinse action.

On TTL Signal #:
This event compares a TTL input (#) to a value of High (H) or Low (L). If the condition is true, the Event is true.
Please consult ESI technical group regarding connections and operation.

Events initiated by ESI SC:

Probe In Sample:
The SC probe has reached the bottom of the specified location. This Event is important since it is a critical
synchronization point with the ICP/ICPMS. The effective “Read-Delay” or “Uptake-Delay” in the ICP/ICPMS method
starts to count at this point.

Rinse Completed:
The SC has finished a Rinse operation as defined by the FAST method.

Move Into Next Complete:

The SC has finished the Move Into Next action.

Timer # Expires:
A Timer with label # has expired.

Actions:
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AuxOutX:
Output X is turned ON or OFF.

Inject(x):
Switches the specified valve to Inject.

Load(x):
Switches the specified valve to Load.

Move Into(rrvv):
The SC moves the probe into a (r)ack (v)ial position.

Move Into Next:

The SC moves the probe into the next sequential vial position.

Move Next:
The SC moves the probe above the next sequential vial position. For example, if the current vial position is 101, then
MoveNext will move probe above position 102.

Move Rinse:
The SC performs the probe rinse as specified in the FAST method.

Move To(rrvv):
The SC moves the probe above a (r)ack (v)ial position.

Probe Down:
The SC moves the probe down.

Probe Up:
The SC moves the probe up.

Timer #:
A countdown Timer with label # is started for the specified length of time.

Toggle Valve:
The specified valve is toggled from its current position (Load to Inject or vice versa).

Trigger instrument:
Sends a momentary switch-closure or 5V signal to a specific output.

Vacuum(x) Off:
Turns the specified vacuum pump off.

Vacuum(x) On:

Rev 1 122
Additional Features
The following is a list of additional features provided by the SC system. These are often dependent on the host
instrument and autosampler combination used.

1) Flexibility in generating a combination of different rack types within the same layout,
2) Control of tube count directions within the rack,

Hardware Calibration Procedures

It is recommended that factory calibration values be used. These values are provided as part of the documentation
included with each SC Autosampler. The values may be entered as follows:
1) Go to Calibrate>>Calibrate Autosampler menu.
2) Enter X & Y Calibration Offsets values and click Apply Calibration Offset(s). Probe will move above Rinse
Station.
3) For the Rinse positions, enter X & Y Offset values and click Apply Entered Rinse Offset(s).
4) Click OK to close window.

Following are the recommended procedures for calibration of various SC Autosamplers.

Calibration Procedure for SC-models: 2, 2DX, E2, 4, 4DX, E4

1) Ensure the correct Probe Length (usually 150mm), has been chosen.
2) Remove any samples from the Manual Sample location.
3) Locate the calibration mark (a small dimple on the sample platform, to the side of the rinse
station).
4) Select the Go To Calibration Point button to move the probe to the calibration location.
5) Place the probe in the arm so that the tip of the probe nearly touches the sample platform. Verify
that the probe is straight and parallel to vertical axis of the autosampler.
6) Verify that the probe is properly positioned in the arm as shown in Figure 76.

Rev 1 123
 Figure 76: Probe arm measurements.

7) If the probe is not directly above the calibration mark, the user must make adjustments using the
horizontal (X, XXX) and rotational (Y, YYY) buttons.
8) Press the Set Calibration button to save the current calibration position. The SC autosampler will
automatically calculate and update the “Calibration Offsets” values.
9) Click Move to Rinse1, to move the sample probe over the rinse station. Make adjustments using
the horizontal (X) and rotational (Y) buttons, so that the probe is centered above the rinse station.
Click Apply Offset. Repeat these steps for Move to Rinse2.
10) Select OK to close window.

If further calibration is required, the Calibration>>Rack Calibration menu may be used to calibrate each
quadrant.

Advanced Rack Calibration Procedure for SC-models: 2, 2DX, E2, 4, 4DX, E4

Each Rack can be calibrated individually by following the procedure below:

1) First place the appropriate Rack #.

2) The probe can be directed to a rack corner by choosing from the buttons; Corner 1-4.
3) Next, use the Horizontal and Rotational move buttons to center the probe over the vial position. The Set
Calibration button can now be selected to apply the offset values.

Because a region may cover only a portion of a rack, it is recommended that the “Center Probe in Vial Number”
field be referenced so that the probe is adjusted to the correct vial position.

4) Next, the probe should be directed to a diagonally opposite corner. For instance, if the first corner calibrated
was Corner 1, then Corner 4 should be used for this step.
5) Repeat step (3).

Rev 1 124
 6) Verify all four corners of rack and repeat starting at step (2) if necessary.

Alternatively, values can be modified manually, followed by clicking the Apply Calibration Value button. See Figure
77.

Figure 77: Regional Calibration Window.

Calibration Procedure for SC-models: 8, 8DX, 14, 14DX

1) Ensure the correct Probe Length (usually 150mm), has been chosen.
2) Remove any samples from the Manual Sample location.
3) Locate the calibration mark (a small dimple on the sample platform, to the side of the rinse
station).
4) Select the Go To Calibration Point button to move the probe to the calibration location.
5) Place the probe in the arm so that the tip of the probe nearly touches the sample platform. Verify
that the probe is straight and parallel to vertical axis of the autosampler.
6) Verify that the probe is properly positioned in the arm as shown in Figure 76.

Rev 1 125
 Figure 78: Probe arm measurements.

7) If the probe is not directly above the calibration mark, the user must make adjustments using the
horizontal (X, XXX) and rotational (Y, YYY) buttons.
8) Press the Set Calibration button to save the current calibration position. The SC autosampler will
automatically calculate and update the “Calibration Offsets” values.
9) Click on Go To Verify Calibration Point, the probe will now move to the Calibration Verification
Point. Next determine what adjustment may be necessary to place the probe over both calibration
points. The adjustment that is determined can be entered into the X & Y Offsets followed by
clicking on Apply Calibration Offsets. The direction of the offsets can be determined by referring to
the convention noted in the diagram. It is recommended that small incremental adjustments be
tested so that the affect to each of the calibration points can be observed. Approximate offset
equivalents in the X-direction: 100steps=0.125 inch [3.175mm]. Approximate offset equivalents in
the Y-direction: 2 steps=0.165inch [4.19mm] .
10) Click Move to Rinse1, to move the sample probe over the rinse station. Make adjustments using
the horizontal (X) and rotational (Y) buttons, so that the probe is centered above the rinse station.
Click Apply Offset. Repeat these steps for Move to Rinse2.
11) Select OK to close window.

Rev 1 126
 If further calibration is required, the Calibration>>Rack Calibration menu may be used to calibrate
each rack.

Advanced Rack Calibration Procedure for SC-models: 8, 8DX, 14, 14DX

The detailed calibration procedure below may not be necessary however it will improve performance depending
on the uniformity of racks used. It is recommended that the RAF function also be used. (See Configure
Autosampler Menu.) The detailed procedure below shows images for the SC-14. The images for the SC-8 are
similar but not shown in this section.
1) Enter factory offsets given for the Autosampler. (Offsets are provided with the installation documentation.)
a. Go to Calibrate>>Calibrate Autosampler
b. Enter Calibration offsets for X and Y.
c. Click on Apply Calibration Offsets button
d. Send autosampler to Home position
2) Enter factory offsets given for each autosampler rack (Offsets are provided with the installation
documentation.) See Figure 79.
a. Go to Calibrate>>Calibrate Rack
b. Enter offsets for each rack
c. Click on Apply Rack Calibration

Figure 79: Calibrate rack window for SC-14.

Rev 1 127
 3) Set the calibration of Racks 0-6 of the autosampler. See Figure 80. For each rack:
a. Click Corner 4 (closest to the center channel).
b. Make adjustments if necessary starting with the (Y) then the (X) jog buttons.
c. When finished click on Set Rack Calibration followed by Go Home.
d. Click Corner 1 (opposite from Corner 4)
e. Make adjustments if necessary starting with the (Y) then the (X) jog buttons.
f. When finished click on Set Rack Calibration followed by Go Home.
g. Check adjustments by clicking Corner 2 and Corner 3.

Figure 80: SC-14 Location of Calibration Corners.

4) Set the calibration of Racks 7-12, 13, 14 of the autosampler. See Figure 80. For each rack:
a. Click Corner 1 (closest to the center channel).
b. Make adjustments if necessary starting with the (Y) then the (X) jog buttons.
c. When finished click on Set Rack Calibration followed by Go Home.
d. Click Corner 4 (opposite from Corner 1)
e. Make adjustments if necessary starting with the (Y) then the (X) jog buttons.
f. When finished click on Set Rack Calibration followed by Go Home.
g. Check adjustments by clicking Corner 2 and Corner 3.
5) Close the Rack Calibration window then on the main autosampler window go to File and click on Save.

Rev 1 128
Maintenance
Preventive Maintenance for SC FAST Systems (TN090928 Rev1)

The following preventive maintenance procedures are recommended to help insure proper functioning of the SC and
FAST systems. The time between scheduled inspections may vary dependent on the duty time of the unit and the
type solutions/samples used.

Daily
 Inspect all devices for leaks. Replace any damaged lines or fittings.

 A flushing routine is recommended when aggressive solutions are used. The routine may consist of simply
placing a sample of DI water at the end of the final sequence or daily run.
 If an aggressive carrier or rinse solution is used, the routine should include placing the carrier and internal
standard probes in DI water. Using the Manual menu in the ESI SC software, the vacuum should be turned
on and the probe moved to a vial with DI water. As the probe is in the vial, the valve should be cycled
between Load and Inject.

Every six months

 Test FAST vacuum pump. FAST vacuum should draw at least 20ml/min using a blue or gray marker line
between the pump and a vial of DI water. Replace any FAST vacuum pump that is showing leaks or loss of
efficiency.

Depending on application and sample count

 Frequently clean and inspect the valve if:

o Using the PTFE rotor,
o Sample frequency is high,
o Solutions have a high amount of solids.

Rev 1 129
Maintenance for P-Series FAST Valve

Initial Precaution

All surfaces of the valve should be clean and free of contaminants and must be kept clean to prevent valve damage.
Open ports and fittings cause unnecessary risk of particulate matter entering the valve and scratching the sealing
surfaces, which is the most frequent cause of premature valve failure.

Disassembly and Cleaning

1. Cleaning a valve can often be accomplished by flushing all the lines with appropriate solvents, such as isopropyl
alcohol.

2. To disassemble the valve, use a 7/64” hex driver to remove the socket head screws which secure the Stator Ring,
CTFE Stator and Body Ring onto the valve body.

Figure 81: Exploded View of the High Flow Valve

3. To prevent any damage to the sealing surface of the stator, rest it on its outer face. If the tubing is still
connected, leave it suspended by the tubing.

4. With your fingers or a small tool, gently pry the PFA Rotor away from the driver on the body of the valve.

5. Examine the rotor sealing surface for scratches. If scratches are visible to the naked eye, the rotor must be
replaced.

6. Clean all the parts thoroughly with an appropriate solvent, such as isopropyl alcohol, while exercising care so
that surfaces do not get scratched.

7. Carefully examine ports in the stator for Teflon shavings. If shavings are present, use canned air to direct airflow
from the opposite side of the stator through each individual port.

8. Use a foam swab with isopropyl alcohol to gently clean the threads of the port, being careful not to force any
shavings deeper into the port. Once this has been completed, repeat step 7 with canned air.

Rev 1 130
Reassembly

1. Replace the PFA Rotor in the driver on the body, making sure that the rotor sealing surface with its engraved
flow passages is facing out. The pattern is asymmetrical to prevent improper placement so be sure to align the
rotor correctly into the slots on the driver.

Figure 82: Replacing rotor into the driver.

2. Replace the Body Ring, being careful to align the holes for the socket head screws.

Figure 83: Replacing body ring.

3. Replace the CTFE Stator by aligning the two holes on the back of the stator with the pins on the body of the
valve. The pattern is asymmetrical so be sure that the holes for the socket head screws are aligned.

Rev 1 131
 Figure 84: View of aligning pins and replacing the stator.

Figure 85: Correctly aligned stator left, and incorrect on right.

4. Insert the socket head screws and tighten gently and evenly until snug. The screws simply hold the assembly
together and do not affect the sealing force, which is automatically set as the screws tighten the stator against
the valve body. Be careful not to over-tighten! Over-tightening may damage the stator and create a leak.

Figure 86: Reassembled High-Flow Valve.

5. Align outer ring to stator. Make sure to align the notch on the CTFE Stator with the notch on the Stator Ring.
Rev 1 132
 6. Reassembly of the valve is now complete.

7. Attach one end of the loop with white fittings to port #1 and the other to port #4 on the stator of the FAST
valve.

8. Attach the Carrier In line with red fitting to port #2.

9. Attach the Nebulizer line with green fitting to port #3.

10. Attach the Probe line with blue fitting to port #5.

11. Attach the Vacuum line with black fitting to port #6.

12. The valve is now ready for use. It may be necessary to cycle the valve a few times to properly index and align
the rotor and stator. It is important to verify that the LEDs switch properly indicating proper motion. If the LED
lights do not appear to transition consistently, the Diagnosis menu will provide access to a selection list where
the valve actuator is chosen followed by the use of the “Index Valve” button.

Removal of the valve assembly is not required for cleaning. However, if you choose to do so, please verify the
proper placement of the Coupling and secure the Clamp Ring tightly during reassembly.

If after reassembly the valve does not properly cycle or properly index, perform the following steps: 1)
Disconnect control cable, 2) Cycle Load & Inject three times using the software, 3) Reconnect control cable and again
cycle Load & Inject three times using the software.

Coupling

Clamp
Ring

If you have any questions, please contact ESI technical support at support@[Link] or +1.402.991.7800

Rev 1 133
Maintenance for Multi-Position Valve

Initial Precaution

All surfaces of the valve should be clean and free of contaminants and must be kept clean to prevent valve
damage. Open ports and fittings cause unnecessary risk of particulate matter entering the valve and scratching
the sealing surfaces, which is the most frequent cause of premature valve failure.

Disassembly and Cleaning

1. Cleaning a valve can often be accomplished by flushing all the lines with appropriate solvents, such as
isopropyl alcohol.

2. To disassemble the valve, use a 7/64” hex driver to remove the socket head screws which secure the
Stator onto the valve body.

Figure 87: Valve head components.

3. To prevent any damage to the sealing surface of the stator, rest it on its outer face. It will be necessary to
remove the lines to inspect the sealing surface at each fitting for debris.

4. With your fingers or a small tool, carefully pry the rotor away from the driver on the body of the valve.

Rev 1 134
 Figure 88: Rotor positioned in driver.

5. Examine the rotor sealing surface for scratches. If scratches are visible to the naked eye, the rotor must be
replaced.

6. Clean all the parts thoroughly with an appropriate solvent, such as isopropyl alcohol, while exercising care
so that surfaces do not get scratched.

7. Carefully examine ports in the Stator for debris. If debris is present, use canned air to direct airflow from
the opposite side of the stator through each individual port.

8. Use a foam swab with isopropyl alcohol to gently clean the threads of the port, being careful not to force
any shavings deeper into the port. Once this has been completed, repeat step 7 with canned air.

Reassembly

9. Replace the rotor onto the driver with the flow passages facing out. The pattern of three tabs is
asymmetrical to prevent improper placement on the driver.

10. Replace the stator by aligning the two holes on the back of the stator with the pins on the body of the
valve. The pattern is asymmetrical to insure proper alignment.

Rev 1 135
 Figure 89: Align Stator to valve body.

11. Insert the socket head screws and gently tighten until snug and the Stator contacts the valve body. Be
careful not to over-tighten!

12. Reassembly of the valve is now complete.

13. Reattach liquid lines.

14. The valve is now ready for use. It may be necessary to cycle the valve a few times to properly index.

Removing and Attaching Valve Assembly

Removal of the valve assembly is not required for cleaning. However, if you choose to remove, please verify the
proper placement of the Coupling and secure the Clamp Ring tightly during reassembly. Failure to assemble
properly may result in damage to valve assembly or improper positioning.

The following procedures are recommended.

To Remove Valve Assembly:

1. Use 9/64” hex wrench to loosen clamp ring. See Figure 91.
2. Secure Coupling as it will likely fall from drive.

It may be helpful for the reassembly procedure if the actuator is first indexed to a known location if the
control cable is to be disconnected.

To Attach Valve Assembly:

1. Index the actuator to a chosen position using the ESI SC software control.
2. Index the valve assembly to the same position as the actuator. It may be necessary to use pliers to turn
the cross-pin. See Figure 90.

Rev 1 136
 The suggested method to assure that the valve is in the correct position is to connect a vacuum line to the
center port and place a small measure of DI water in the port. As the valve is indexed to this port the
liquid will be removed by the vacuum.

Figure 90: Indexing Rotor in Valve Assembly

3. With both the valve and actuator in a matching position and the coupling in place, align the locating pin to
the Pocket in the valve assembly. It may be necessary to reposition the coupling by 90 degrees to allow
the valve to mount properly.
4. Verify that the valve is inserted properly and secure the clamp ring using 9/64” hex wrench.
5. Verify proper positioning by using the ESI SC software to check that solution is flowing to proper ports.

Figure 91: Alignment of Valve Head to Actuator

If you have any questions, please contact ESI technical support at support@[Link] or +1.402.991.7800.
Rev 1 137
Maintenance for High Flow FAST Valve

Initial Precaution

All surfaces of the valve should be clean and free of contaminants and must be kept clean to prevent valve damage.
Open ports and fittings cause unnecessary risk of particulate matter entering the valve and scratching the sealing
surfaces, which is the most frequent cause of premature valve failure.

Disassembly and Cleaning

1. Cleaning a valve can often be accomplished by flushing all the lines with appropriate solvents, such as
isopropyl alcohol.

2. To disassemble the valve, use a 7/64” hex driver to remove the socket head screws which secure the stator
and body ring onto the valve body.

Figure 92: Exploded View of the High Flow Valve

3. To prevent any damage to the sealing surface of the stator, rest it on its outer face. If the tubing is still
connected, leave it suspended by the tubing.

4. With your fingers or a small tool, gently pry the rotor away from the driver on the body of the valve.

5. Examine the rotor sealing surface for scratches. If scratches are visible to the naked eye, the rotor must be
replaced.

6. Clean all the parts thoroughly with an appropriate solvent, such as isopropyl alcohol, while exercising care so
that surfaces do not get scratched.

Rev 1 138
 7. Carefully examine ports in the stator for Teflon shavings. If shavings are present, use canned air to direct
airflow from the opposite side of the stator through each individual port.

8. Use a foam swab with isopropyl alcohol to gently clean the threads of the port, being careful not to force any
shavings deeper into the port. Once this has been completed, repeat step 7 with canned air.

Reassembly

9. Replace the rotor in the driver on the body, making sure that the rotor sealing surface with its engraved flow
passages is facing out. The pattern is asymmetrical to prevent improper placement so be sure to align the
rotor correctly into the slots on the driver.

Figure 93: Replacing rotor into the driver.

10. Replace the body ring, being careful to align the holes for the socket head screws.

Figure 94: Replacing body ring.

Rev 1 139
 11. Replace the stator by aligning the two holes on the back of the stator with the pins on the body of the valve.
The pattern is asymmetrical so be sure that the holes for the socket head screws are aligned.

Figure 95: View of aligning pins and replacing the stator.

Figure 96: Correctly aligned stator left, and incorrect on right.

12. Insert the socket head screws and tighten gently and evenly until snug. The screws simply hold the assembly
together and do not affect the sealing force, which is automatically set as the screws tighten the stator
against the valve body. Be careful not to over-tighten! Over-tightening may damage the stator and create a
leak.

Figure 97: Reassembled High-Flow Valve.

Rev 1 140
 13. Reassembly of the valve is now complete.

14. Attach one end of the loop with white fittings to port #1 and the other to port #4 on the stator of the FAST
valve.

15. Attach the Carrier In line with red fitting to port #2.

16. Attach the Nebulizer line with green fitting to port #3.

17. Attach the Probe line with blue fitting to port #5.

18. Attach the Vacuum line with black fitting to port #6.

19. The valve is now ready for use. It may be necessary to cycle the valve a few times to properly index and align
the rotor and stator. It is important to verify that the LEDs switch properly indicating proper motion. If the
LED lights do not appear to transition consistently, the Diagnosis menu will provide access to a selection list
where the valve actuator is chosen followed by the use of the “Index Valve” button.

Removal of the valve assembly is not required for cleaning. However, if you choose to do so, please verify
the proper placement of the Coupling and secure the Clamp Ring tightly during reassembly.

If after reassembly the valve does not properly cycle or properly index, perform the following steps: 1)
Disconnect control cable, 2) Cycle Load & Inject three times using the software, 3) Reconnect control cable and
again cycle Load & Inject three times using the software.

Coupling

Clamp
Ring

If you have any questions, please contact ESI technical support at support@[Link] or +1.402.991.7800

Rev 1 141
Technical Notes
This section contains technical notes.

Document Title Keyword

Number

TN140505 ESI Wash Solution Setup [CLN-T-250] rinse

TN050808 Background Services communication

TN030808 Elevating Priority of ESI SC communication

TN140425 USB Cable Length Specification communication

TN110609 Loss of GPIB Communication on PE Elan Configuration communication, GPIB,

Elan

TN090928 Preventive Maintenance of SC-FAST Systems maintenance

TN090925 Proper Venting & Exhaust of SC Autosamplers maintenance

TN091001 Backups of Key SC/FAST Files software

TN110610 Updating ESI SC Software software

TN110518 SC-DX Probe Arm Realignment Guide hardware

TN141111 Configuring SC-Exact hardware, SC-Exact

TN010906 Access to Micro48 and Micro96 Plates in PlasmaLab. PlasmaLab

TN120709 Access to MT24G Rack in PlasmaLab PlasmaLab

TN120814 Access to SC-14 Racks in PlasmaLab PlasmaLab

TN200807 Communication Loss in PlasmaLab PlasmaLab

TN110225 Using Custom MAP files in iTEVA iTEVA

TN160807 Custom Racks in Thermo Element & Neptune Element, Neptune

TN060406 Use of GPIB232CV-A Elan, Optima

Rev 1 142
ESI Wash Solution Setup [CLN-T-250] (TN140505)

Background:

Improved washout using ESI Wash Solution

FAST Methods referred to below can be downloaded from:

[Link] Wash [Link]

ESI Wash Solution between samples:

1) Prepare 1% ESI Wash Solution (P/N: CLN-T-250):

a. Dilute contents to 250mL with Ultra-Pure 1 % Nitric Acid
b. Secure cap and agitate until dissolved
2) In ESI SC, change Rack 0 to add the “+ EX-5” rack:

Figure 98: Rack Setup window.

3) Place 250mL bottle of prepared solution at position 5 on the ST-EX5 rack.

Rev 1 143
 4) In ESI SC, open FAST then click File>>Open Text File, and select “FAST-LRT-1mL-Static-CLN”
a. Update this FAST method with your current Timer A, G & B settings, then save with a
new name

On-Demand Wash:

1) Prepare 1% ESI Wash Solution (P/N: CLN-T-250):

a. Dilute contents to 250mL with Ultra-Pure 1 % Nitric Acid
b. Secure cap and agitate until dissolved
2) In ESI SC, change Rack 0 to add the “EX-5” rack:

Figure 99: Rack Setup window.

3) Place 250mL bottle of prepared solution at position 5 on the ST-EX5 rack.

4) Select “ESI Wash Solution” on the main page of ESI SC and click the play icon:

Figure 100: Selection of Sub-Method and Start/Stop buttons.

5) This will Wash the Sample Probe, Sample Loop and FAST Valve

Note: If you have any questions with this setup/configuration please contact support@[Link]
Rev 1 144
Setting Background Services Priority (TN050808-R1)

Depending on peripheral devices that are connected to computer, such as printers or USB connections,
the following adjustment is recommended to improve communication performance.

The following step can be taken to correct the problem:

 Open Control Panel>>System>>Advanced>>Performance Settings>>Advanced and set the

Processor scheduling to Background services. See Figures below.

Figure 101: Windows Control Panel.

Figure 102: System>>Advanced>>Performance

Rev 1 145
 Figure 103: Selecting "Background services".

Rev 1 146
Elevating Priority of ESI SC (TN030808)

Changing the priority of the ESI SC software may ease resource limitations of computer.

The following steps can be taken to test for the problem. The settings will revert to original
settings at the next start of the ESI SC program.

1) After starting the ESI SC software, use Ctrl-Alt-Del to access the task manager and switch
to the Processes tab.
2) Locate and right-click on the ESI [Link] and select Set Priority and choose High.

Figure 104: Windows Task Manager.

3) Run ESI SC and evaluate. Note that this setting is maintained only until the ESI SC
software is shut down.

Rev 1 147
USB Cable Length Specification (TN140425)

Background:

USB 2.0 provides for a maximum cable length of 5 meters for devices running at Hi Speed (480 Mbit/s). The
primary reason for this limit is the maximum allowed round-trip delay of about 1.5 μs. If USB host commands
are unanswered by the USB device within the allowed time, the host considers the command lost.

Example:

Connecting ESI autosampler that is > 5m away from the computer

Procedure:

1) USB Hubs:
a. You can use extension cables and up to 5 USB hubs connected together to extend USB's range up to 30
meters. The distance between each hub can be no more than 5 meters.

2) Active Extension Cables:

a. USB active extension cables contain electronics which regenerate the USB signal. These cables are
essentially a 1 port USB hub and will allow you to go up to 30 meters by connecting up to five active
extension cables together. The distance between each hub can be no more than 5 meters.

Rev 1 148
Loss of GPIB Communication on PE Elan Configuration (TN110609)

The following start-up procedure may be used to help correct GPIB communication problems that may be related to
“noisy” connections on the GPIB controller.

1) Begin with the GPIB to RS-232 interface set to OFF. The Elan and ESI software should also be closed.
2) With the ESI SC hardware powered ON, start the ESI SC software and initialize.
3) Start the Elan software.
4) Verify that the “Instrument” panel in the Elan software shows a “yellow” or “green” state.
(If the status shows an error or “red” status, restart the computer and refer to the Elan operation manual for
instruction on how to restart the Elan instrument. This should be required only once and should not be
necessary if using this start-up procedure.)

5) Switch the GPIB to RS-232 interface to ON.

6) In the Elan software, use the Devices window to initialize the connection to the autosampler.
7) Verify control of the SC autosampler from the Elan software (Probe window).

Rev 1 149
Preventive Maintenance for SC FAST Systems (TN090928 Rev1)

The following preventive maintenance procedures are recommended to help insure proper
functioning of the SC and FAST systems. The time between scheduled inspections may vary
dependent on the duty time of the unit and the type solutions/samples used.

Daily

 Inspect all devices for leaks. Replace any damaged lines or fittings.
 A flushing routine is recommended when aggressive solutions are used. The routine
may consist of simply placing a sample of DI water at the end of the final sequence or
daily run.

 If an aggressive carrier or rinse solution is used, the routine should include placing the
carrier and internal standard probes in DI water. Using the Manual menu in the ESI SC
software, the vacuum should be turned on and the probe moved to a vial with DI water.
As the probe is in the vial, the valve should be cycled between Load and Inject.

Every six months

 Test FAST vacuum pump. FAST vacuum should draw at least 20ml/min using a blue or
gray marker line between the pump and a vial of DI water. Replace any FAST vacuum
pump that is showing leaks or loss of efficiency.

Depending on application and sample count

 Frequently clean and inspect the valve if:
o Using the PTFE rotor,
o Sample frequency is high,
o Solutions have a high amount of solids.

Rev 1 150
Proper Venting & Exhaust of SC FAST Systems (TN090925)

Enclosures for the ESI SC autosampler can be beneficial for both protecting the samples from
contaminants and also protecting the user from harmful vapors. Additionally, the enclosure
provides protection to the mechanical probe movements against accidental bumping. To avoid
warranty issues, the autosampler enclosures must be used in one of the following basic
configurations. With any configuration it is recommended that the enclosure be connected to
an exhaust system.
ULPA Filter with Exhaust
ULPA filter is designed to be 99.999% efficient at removing 0.12 micron or larger
particulates.
 The following notes are provided regarding this configuration. It is the user’s
responsibility to insure the proper exhaust and/or containment of any harmful gasses.
Failure to do this may result in risk to samples, equipment, or otherwise be harmful to
the user.
 If the chemistry permits the harmless release of vapors to the exterior of the enclosure,
the SC unit may be placed in the laboratory without the need of an exhaust vent or
without the need to place it within a hood.

 The ULPA filter should be powered ON during any time that vapors could collect within
the enclosure. The flow of air will prevent the collection of vapors that over time could
attack the components of the autosampler.
Exhaust Only
If ULPA filter treatment is not required, the Exhaust configuration is especially useful for
removing harmful gasses from the enclosure and safely preventing them from transferring
to the lab environment.
 It is recommended that the enclosure be connected to laboratory exhaust system. The
enclosures are provided with a 2 or 4 inch diameter connection depending on the
model.
 The exhaust should be connected any time that vapors could collect within the
enclosure. The flow of air will prevent the collection of vapors that over time could
attack the components of the autosampler.

Rev 1 151
Backup of Key ESI SC Files (TN091001-R1)

For the purposes of creating a backup of key ESI SC files, the following list is provided. It is
recommended that copies of files be used only with the same installed version. Please note
version of installed software. These files will be located in the following folders:

Windows 2000, XP: [Install Directory]\Program Files\ESI\ESI SC\

Windows Vista, 7: [Local Disk (C:)]\ProgramData\ESI\ESI SC\

Program files

[Link]

[Link]

[Link]

SC Initial [Link]

Configuration files (.sc)

[Link]

Any user-created configuration files.

FAST method files (.txt)

Any user-created FAST method files.

Also, include any customized files if used:

Any user-created static tray files. (.*tray, .try)

[Link]

Autostart files (.bat, [Link])

Rev 1 152
Updating ESI SC Software (TN110610-R1)

The following instructions may be used to update the ESI SC software to the latest version. Administrator privileges will
be required on the computer.

1) Download software installer from: [Link]/support

Login is not required to use the link at bottom of page.

2) Uninstall old version. (Uninstall will not remove any created FAST method files and these file will be
automatically updated to the format of the new version.)
If any customization has been performed on the ESI SC software such as custom racks or special device
parameters, please collect copies of these files for reference by ESI technical support.

3) Reboot computer.
4) Install from downloaded files (you may have to unzip to a folder to be able to run the files.)
5) Check in the Control Panel>>System>>Hardware>>Device Manager to verify that the computer recognizes
any Prolific USB-Serial or USB Serial port adapters if used. If the computer does not see them, remove them for
a few seconds then plug back in. (The driver version for the Prolific Driver should be [Link] or later).
6) Run ESI SC and verify that ports are configured correctly. Please refer to install instructions pertaining to the
specific “ESI + host instrument” configuration.
7) Verify that the correct instrument/emulation is selected in ESI SC.
8) Place the correct racks in ESI SC layout
9) Initialize ESI SC and use the Manual window to verify proper operation.
10) Test control from host instrument software.

Rev 1 153
SC-DX Probe Arm Realignment Guide (TN110518-R1)
Background:

The radial position of the arm on the SC-DX autosampler should be as shown in Figure 105. The arm should be 180
degrees relative (opposite) of open side of vertical rail. If realignment is required, the following procedure is
recommended.

Figure 105: Proper Radial Position of Arm.

Procedure:

1) Ensure probe is vertically straight.

2) In the Calibrate>Calibrate Autosampler window, locate the Y-Offset value and change it to 0 as shown in
Figure 106 and then click on “Apply Calibration Offset(s)” button.

Rev 1 154
 Figure 106: Calibrate Autosampler Window.

3) Locate the screw shown in Figure 107 and loosen. This will permit the arm to be radially adjusted. (The arm
does not need to be removed. It is shown removed only for clarity.)

Figure 107: Arm Holder securing screw.

4) Next, click on “Go To Calibration Point”.

5) Now with the screw still loosened from Step 3), and with the probe in place, rotationally adjust the arm until
the probe tip is on the calibration spot. Do not disturb (rotate) the vertical post from its position to insure
better accuracy. See Figure 108.

Rev 1 155
 Figure 108: Proper position of probe over Calibration Point.

6) Next tighten the “Arm Holder securing screw” while being careful not to disturb the radial position.

7) Click on “Go Home”, the arm & probe should now be positioned above the rinse station.

8) Verify that the adjustment is good by again clicking on “Go To Calibration Position”. Repeat adjustments if the
probe is not within 3mm (1/8 inch).

Rev 1 156
Configuring SC-Exact (TN141111-R1)

Some initial configuration changes are required for setup of a SCexact system. Follow the steps below to configure a
SCexact system.

Enabling Triple Encoding:

1) Open ESI SC, Configure>>SCexact and check Enable for both the X and Y encoders
 Also, check Disable XY Homing

Note: If a password is requested, enter: 2440

Figure 109: Configure>>SCexact window.

2) After enabling you must then click Save and then Update

To check the position log:

1) Using windows file explorer, browse to:

 Win XP: C:\Program Files\ESI\ESI SC\Logs
 Win 7: C:\ProgramData\ESI\ESI SC\Logs
2) All logs have the date in the file name. Log example:

Figure 110: Example of log file (csv).

Rev 1 157
 Access to Micro96 and Micro48 in PlasmaLab (TN010906)

Description: The following instructions describe how to access the Micro96 and Micro48 racks
on the SC-2 when controlled by the PlasmaLab software.

1) PlasmaLab access to Micro96 racks: Select the 3x8 rack in the PlasmaLab software.
Select the Micro96 rack in the corresponding location on the SC-2. Regardless of vial
location used in the PlasmaLab, the depth values 1-96 will address vial positions 1-96
located on SC-2 for the corresponding rack location. Any vial position chosen in the
corresponding rack defined in the PlasmaLab will be interpreted by only using the
depth. If the depth is selected in the PlasmaLab is 0 or greater than 96 an error will be
returned from the ESI SC software.

2) PlasmaLab access to Micro48 racks: Select the 3x7 rack in the PlasmaLab software.
Select the Micro48 rack in the corresponding location on the SC-2. Regardless of vial
location used in the PlasmaLab, the depth values 1-48 will address vial positions 1-48
located on SC-2 for the corresponding rack location. Any vial position chosen in the
corresponding rack defined in the PlasmaLab will be interpreted by only using the
depth. If the depth is selected in the PlasmaLab is 0 or greater than 48 an error will be
returned from the ESI SC software.

Access to MT24G in PlasmaLab (TN120709)

Description: The following instructions describe how to access the MT24G racks on the SC-2/4
when controlled by the PlasmaLab software.

1) Using the “Accessory Setup and Control” of the PlasmaLab, use the Wizard to add a
new device and choose the Cetac-500. If using a SC-4 with more than four rack
locations it will be necessary to choose the Cetac-500ER during this step.
2) Choose the 24 position racks (3x8) for the corresponding locations on the SC that will
have the MT24G rack. Although the racks dimensions (3x8) do not agree with the
MT24G (4x6), the autosampler will sequentially process the rack for a total of 24
positions.
3) Save the new Accessory settings.

Rev 1 158
Access to SC-14 Racks in PlasmaLab (TN120814)

Note: ESI SC Software version [Link] or newer is needed

When configuring PlasmaLab you must configure using the Cetac 500ER accessory. Refer to
“PlasmaLab and SC-Autosampler” configuration.

Operation:

Use the chart below to reference how to access all racks on the SC-14.

Depth Setting PlasmaLab Rack ESI Rack

144/any 1-8 1-8
3 1-4 9-12
4 1-2 13-14
In Plasmalab, configured racks 1-6 must match configured racks 1-6 & 9-14 respectively in ESI SC

Example:

PlasmaLab ESI

Rack Row Column Height (mm) Physical Location

1 1 1 144 Rack: 1 Vial: 1

8 1 1 144 Rack: 8 Vial: 1
1 1 1 2 Rack: 9 Vial: 1
4 1 1 2 Rack: 12 Vial: 1
6 1 1 2 Rack: 14 Vial: 1

Rev 1 159
 Communication Loss in PlasmaLab (TN200807)
This document describes the two main reasons for communication loss when using the ESI SC
with PlasmaLab software.

A. Description: An error message from the PlasmaLab software states "Accessory error."
and cannot communicate with ESI SC. This error is generally encountered during
beginning of experiment run.

Figure 111: Error message-“cannot find the file”

Solution: Set the Pre-experiment delay to at least 10 sec.

Figure 112: Pre-experiment delay minimum.

B. Description: An error message from the PlasmaLab software states "Accessory error."
and shows that a "timeout period expired"

Figure 113: Error message-"timeout"

Solution: Check SC autosampler movement settings in the Configuration menu and

retraction speeds at each rack to verify that autosampler completes movements
within the time allowed by the PlasmaLab method.

Rev 1 160
Using Custom MAP Files in iTEVA (TN110225)

Background:

This document illustrates the procedure for using custom autosampler configuration files with the iTEVA/TEVA
software. This is useful for purposes of adding "standard" locations or naming sample locations so that they are
identified in the Analyst window.

The example specifically shows how a "static" or custom SC autosampler configuration may be used. In normal
operation, the ESI SC software continuously rewrites the MAP file to default settings based on the configuration in the
ESI SC. By adding an additional configuration in the iTEVA/TEVA, an unchanging or “static” MAP file will preserve
custom settings.

Example:

In the following example the default configuration for the SC-4 autosampler will be modified to allow the placement of
additional STDs locations in Rack 1. See locations to be modified in Figure 114.

Figure 114: Example- Sample locations to be modified to Standards.

Example Procedure:

1) Configure the ESI SC software with the correct racks to be used. After implementation of this procedure, it is
still required that the rack and tube counts match between the ESI SC software and the iTEVA custom
configuration.

2) Close the iTEVA software.

3) Locate the working directory that has the files that iTEVA/TEVA uses for configuration of the Autosamplers.
Typically these can be found in the following directories:
Rev 1 161
 a. If iTEVA for WindowsXP: Locate the \Program Files\Thermo\iTeva\SysData.
b. If iTEVA for Windows 7: Locate the \Users\Public\Thermo\iTEVA\Autosamp.
c. If TEVA: Locate the \SysData folder in TEVA install directory.

Note: These files may possibly be located in the similar path, in a folder called “Autosamp”.

4) In this example the following files will be modified because a SC-4DX configuration is to be customized on a
computer with Windows XP.

Figure 115: Example location and files to be modified.

5) Create a copy of the existing "ESI SC4 MAP" file and rename as "Custom SC4 MAP".

6) Using Microsoft Excel, open and modify the new "Custom SC4 MAP" file. For this example, we will modify the
first six sample locations for the rack beginning with “Id” 1001. The “Type” will be changed from “U” to “S”,
specifying that location as a “Standard”. See Figure 116.

Rev 1 162
 Figure 116: Customizing values in the new MAP file.

7) The name of the tube can also be specified by entering the desired Label in the appropriate column. See
Figure 116.

8) Save the new file.

9) Next, using [Link], modify the “AutoSamplerConfigurationSets file by selecting the appropriate
Configuration definition and duplicating it. It is important to duplicate all of four lines as shown in Figure 117.
In the new entry, the following changes should be made:

a. The ConfigurationSet Name should be modified by adding the suffix: "-Custom".

b. The MapFile name will be modified to reflect the new MAP file created in Step 5).

Rev 1 163
 Figure 117: New ConfigurationSet added.

10) Save and close the file.

11) With the modifications now complete, the additional autosampler configuration should now be available as
shown in Figure 118.

Note: If multiple autosampler configurations are duplicated but the newly created Custom configuration does
not match the racks in the ESI SC software, it is likely due to the existence of multiple configuration files located in
both the \SysData and the \AutoSamp directories. Repeat Step 9), using the file in the alternate directory.

Rev 1 164
 Figure 118: Newly added "Custom" configuration.

12) The new configuration for this example will now enable the additional Standards locations S-11 through S-16.
See Figure 119.

Figure 119: New Custom autosampler configuration.

Rev 1 165
 Custom Racks in Thermo Element & Neptune (TN160807-R1)

If custom racks are to be configured, the following procedure can be used to modify
the selection set available in the Executive. From the available selection set, the user
can choose what racks are available to the Thermo Instrument.

1) Locate and save the existing Thermo "[Link]" file as

"orig_autosamplers.ini". Commonly, this directory may be
C:\element\system\Instrument or C:\ element\system\idsc or C:\
Neptune\System\Autosampler

2) Copy all files from the C:\Program Files\ESI\ESI

SC\SupportFiles\ElementSupportFiles directory to the Thermo directory that
contains the “[Link]” file. Do not overwrite any existing Thermo files.

3) Open the new “[Link]” file using Notepad and follow directions for
steps A & B for the SC model to be configured. A selection set of four racks
can be defined by specifying the rack type and associated graphic name. The
following excerpts show the values (highlighted in red), that can be changed by
referencing the comments in the file.

[SC2_RTYPES]
RTypBitmapName_0=0
RTypBitmapName_1="[Link]"
RTypBitmapName_2="[Link]"
RTypBitmapName_3="[Link]"
RTypBitmapName_4="[Link]"
*
*
Rev 1 166
 [SC2_RIDS]
RTypID_0= SC2_STD
RTypID_1= SC2_RTYP_6
RTypID_2= SC2_RTYP_7
RTypID_3= SC2_RTYP_14
RTypID_4= SC2_RTYP_11

4) Save the modified “[Link]” file.

5) Open Thermo Executive and select the corresponding SC model in “Selected
Autosampler”. The custom rack options will now be visible as in the following
image. The desired rack can be placed in the corresponding location using
“Drag and Drop.”

Please note that it if the Instrument>>Dockable Windows>>Autosampler window

can control the SC autosampler but the sequence does not update, it may be necessary to
create a new sequence.

After setup of your desired rack, please make a copy of the new “[Link]”
file and rename the copy to “bkup_autosamplers.ini”. If the Thermo software is updated it
will likely overwrite the existing “[Link]” file, you can then restore your
configuration with the “bkup_autosamplers.ini” file.

Rev 1 167
Using a GPIB-232CV-A with ESI SC (TN060406)

This document will illustrate the proper configuration and use of a National Instruments GPIB-232CV-A
that is provided with the ASX-500. The combination of these DIP switch settings and the addition of a
Null adapter (SC-0906) along with a DB9 M/F Serial Cable (SC-0904), can be used to connect the
converter to the computer.

Figure 120: Dip Switch Settings to connect GPIB 232CV-A to DB9 on host computer.

Hardware installation procedure:

1) Verify that the GPIB-232CV-A was originally configured for the autosampler. Incorrect
firmware will prevent proper installation.

2) Remove existing serial cable and replace with Null adapter (SC-0906) and DB9 M/F Serial Cable
(SC-0904). See Figure 120.

3) Secure other end of Serial Cable (SC-0904) to a serial port on host computer.

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