Anatomage Table EDU 6.

0 Application Manual Table of Contents

Anatomage Table EDU 6.0 User's Manual

Anatomage, Inc.
303 Almaden Blvd. Suite 700
San Jose, CA – 95110 – USA
408-885-1474
[email protected]

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Warranty Statement
There are no warranties, expressed or implied, with respect to the contents of this document, and all information provided
herein is provided “as is.” Anatomage reserves the right to periodically change the information that is contained in this
document; however, Anatomage makes no commitment to provide any such changes in a timely manner or at all.

Limitation of Liability
In no event shall Anatomage or its affiliates be liable to any party for any direct, indirect, special, or consequential damages
in connection with your use of this document, including, without limitation, loss of business revenue or earnings, lost data,
damages caused by delays, lost profits, or a failure to realize expected savings, even if Anatomage was expressly advised of
the possibility of such damages.

Trademarks
Anatomage and related marks, images, and symbols are the exclusive properties of, and trademarks of, Anatomage Inc. All
other brands and marks are the properties of their respective owners.

Copyright
Documentation for Anatomage Table EDU 6.0 and the operating system are copyrighted with all rights reserved. Under the
copyright laws, this documentation may not be reproduced, transmitted, transcribed, or translated into any human or
computer language in whole or part without the prior written permission of the copyright holder.

About Anatomage and Software

The Anatomage Table Application software (Table EDU 6.0) was released in 2018 as an update to the Table Application
software from Anatomage, Inc. In this document, the Anatomage Table Application software refers to the latest version of
the Anatomage Table Application software and is synonymous with the terms “Table application”, “Table EDU 6.0”, and
“Anatomage Table application”. To learn more about Anatomage, visit our website at www.Anatomage.com.

Note: Table EDU 6.0 is intended for educational purposes only, and is not to be used for clinical or diagnostic
purposes.

End of Life Statement

Table EDU 6.0 software is dependent on its hardware requirements. The life-cycle is limited only by the availability of the
required hardware.

Language
The original language of this manual and the Table EDU 6.0 software is English.

Image Credit
The following image sets were provided by Dr. Jin Seo Park, Department of Anatomy, Dongguk University College of
Medicine and Dr. Min Suk Chung, Department of Anatomy, Ajou University School of Medicine.
Full Body Male (Asian): The original slice data is from the Visible Korean data set.
Full Body Female (Asian): The original slice data is from the Visible Korean data set.
Full Body Male (Caucasian): The original slice data is from the Visible Human data set.
Full Dog and Cat slice data: This work (2012R1A2A2A01012808) was supported by Mid-career Researcher Program through the National Research
Foundation of Korea (NRF) grant funded by the Ministry of Education, Science and Technology (MEST).
Full Head slice data: This research was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF)
funded by the Ministry of Education, Science and Technology (MEST) (2010-0023360).
The following image set was provided by Brad Smith from the University of Michigan ([email protected], NIH award
N01-HD-6-3257 P/G F003637).
Embryo slice data set (Cases 2013 – 2023) Imaging was performed at the Center for In-Vivo Microscopy, Duke University.
The following image set was provided by David R. Hunt, PhD. (Physical / Forensic Anthropologist, D-ABFA) from the
Smithsonian Institute.
Skull collection (Cases 3008 – 3054)
© 2011 The Board of Trustees of the Leland Stanford Junior University

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Table of Contents

System Requirements.................................................................................................................................4
Touchscreen Requirements........................................................................................................................4
Installation Instructions..............................................................................................................................4
Controls......................................................................................................................................................5
Touch Commands................................................................................................................................5
Keyboard-Only Commands.................................................................................................................5
Controlling the Volume Rendering............................................................................................................6
Touch Control......................................................................................................................................6
Keyboard and Mouse Control ...................................................................................................................7
Introduction to the Anatomage Table Application.....................................................................................8
Launching Table EDU 6.0 Application ...............................................................................................8
Application Toolbar.............................................................................................................................8
Opening DCM/INV Scans...................................................................................................................9
User Interface and Layout........................................................................................................................11
Gross Anatomy.........................................................................................................................................29
Image Adjustment....................................................................................................................................31
Female Full Body with Models and DCM/INV Files – Volume Visibility Dialog...........................36
Preset..................................................................................................................................................38
High Resolution Regional Anatomy........................................................................................................39
Library.....................................................................................................................................................40
Curriculum...............................................................................................................................................43
Error: Reference source not found........................................................Error: Reference source not found
Table Application Troubleshooting..........................................................................................................44

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System Requirements

The Table software is a graphically intense application for use on a PC workstation running a
Windows operating system. It has not been designed for use on Linux, OSX, Android or iOS
platforms such as iPads or other tablets.

Summary
Minimum Recommended
CPU Intel Core i5 2500 series Intel Core i7 3000 series
(compatible multi-core processor) (comparable multi-core processor)
RAM 8GB 16GB
GPU ATI Radeon HD 6670 or Nvidia GeForce GTX 1070
(Graphics Card) Nvidia GT 640
Hard Disk 500GB 1TB
OS Windows7 64bit Windows7 64bit

Touchscreen Requirements

Summary
Hardware Minimum Requirement
Screen Size (Diagonal) 19 inches
Resolution 1280x720
Touch Points 3 or more

Installation Instructions

The Anatomage Table application is available from Anatomage. The software is distributed by
downloading an installer and requires a license USB to operate. The installer contains both the
application files and demonstration content (Full Body Male (Caucasian), Full Body Female (Asian),
Full Body Male (Asian), Full Body Female (Caucasian), High Resolution Regional Anatomy, Case
Library, Histology Library, Curriculum, and Prosection Library). Be sure you have the license USB
and your Table meets the minimum system requirements.

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1. Insert license USB into PC workstation and run Anatomage Table EDU 6.0 installer.
Workstation should be connected to a network with internet connectivity.
2. Open Anatomage Table EDU 6.0 Upgrade installer, double click “autorun” and follow on
screen instructions to complete installation.
3. Launch Table application and enter Authorization Code to activate software license.

Controls
The following section discusses controls for the Table software. For touchscreen devices, please refer
to your specific touchscreen hardware manufacture's calibration instructions and verification
procedures before using with Table EDU 6.0.

Touch Commands
Right click Touch and hold.
Selecting icons Tap icon to select. If compatible multi-icons are shown, use a second
tap to select desired multi-icon. A double tap on the same icon will
open the icon.
On screen keyboard Tap the far left edge of the table screen. The edge of a keyboard will
appear. Touch, hold, and drag keyboard away from edge.

Keyboard-Only Commands
Exiting Full-Screen and Step 1: Press F11 on keyboard or FN + F11 on on-screen keyboard.
viewing application on single Step 2: Press the Windows key and the left/right arrow to snap
display monitor application window to left/right display monitor.

WARNING: Resizing the application window from full-screen to a single monitor will cause the user
interface and scan to be rescaled based on the new application window size.

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Controlling the Volume Rendering

The following section discusses use of the touchscreen for controlling the volume rendering. Table
application supports keyboard, mouse, and touch controls when navigating the application. Some
functions are keyboard specific and do not have a designated icon in the user interface.

Touch Control

Within the Rendering Window, the Table application accepts single- and multi-touch inputs.
Number of Touches Movement Result Description
Volume Viewing:
Single Drag Rotate Rendering will rotate about the scanning
region's geometric center point.
Two Drag Pan Rendering will pan in the dragged direction.
Pinch Zoom in/out Rendering will become larger or smaller.
Rotate Spin Rendering will rotate about the axis
perpendicular to Table surface and through the
scanning region's geometric center point.
(Settings → Spin Enabled)
Three Drag up/down Adjust Can adjust clipping plane by scrolling through
Clipping volume rendering in parallel with initial cutting
Plane plane.
Slice Mode Viewing:
Single DISABLED N/A N/A
Two Drag Pan Slice image will pan in the dragged direction.
Pinch Zoom in /out Slice image will become larger or smaller.
Three Drag up/down Scroll through Can scroll through cross-sectional slices of
slices selected data.

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Keyboard and Mouse Control

Number of Touches Movement Result Description

Volume Viewing:
Left Click Drag Rotate Rendering will rotate about the scanning
region's geometric center point.
Shift + Left Click Drag Pan Rendering will pan in the dragged
direction.
Ctrl + Left Click Drag up/down Zoom in/out Rendering will become larger or
smaller.
Space + Left Click Drag up/down Spin clockwise/ Rendering will spin clockwise or
counterclockwise counterclockwise about its geometric
center point.
Scroll Wheel Roll up/down Adjust Clipping Can adjust clipping plane by scrolling
Plane through volume rendering in parallel
with initial cutting plane.
Slice Mode Viewing:
Shift + Left Click Drag Pan Rendering will pan in the dragged
direction.
Ctrl + Left Click Drag Zoom in/out Rendering will become larger or
smaller.
Scroll Wheel Roll up/down Scroll through slices Can scroll through cross-sectional slices
of selected data.

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Introduction to the Anatomage Table Application

Launching Table EDU 6.0 Application

From the desktop, double-tap (double-click) the Table icon to launch the
Anatomage Table application. Users will be shown the Application Toolbar
below.

Open File Opens multi-dicom (DCM) scan files or Invivo (INV) scan files.
Import PACS Opens user interface for establishing PACS connection and downloading files.
Gross Anatomy Opens user interface for selecting full body Gross Anatomy data.
High Res Regional Opens user interface for selecting higher resolution regional scans from male
Anatomy and female real tissue data.
Case Library Opens user interface for selecting educational clinical case data sets.
Histology Opens user interface for selecting histology slides.
Curriculum Opens user interface for selecting curriculum views. Curriculum views,
provided by Anatomage, are single scans with pre-made annotations and view
sequences for teaching purposes.
Prosection Opens user interface for selecting prosection data.
Minimize Minimizes the Table application. Available only when case is currently open.
Exit Application Closes the Table application.
Cancel Closes the Application toolbar. Available only when case is currently open.

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Opening DCM/INV Scans

Step 1: Select Open File from the Application toolbar.

Step 2: Use the Windows Explorer interface to navigate to directory of INV file or DCM file series.
INV file Select file and press Open.
DCM series Select single DCM file and press Open. Software will scan through
folder and check each DCM file's metadata prior to loading all DCM files
in the same series.

Step 3: Table application will automatically construct image volume based on INV or DCM file.
For INV files, any additional content created and saved with the patient data using Invivo6
software (surface models, models, etc.) will be loaded as well.

WARNING: Table application and Invivo6 software will load in DCM files contained within the same
folder and of the same imaging series when reconstructing the volume. It is the responsibility of the user
to confirm that all slice information is available and in the same folder when loading onto Table6.0 or
saving from Invivo6.

WARNING: If Table application detects that some DCM files are missing, corrupt, or otherwise
determined inaccurate, an error message will appear about possible inaccurate reconstruction. The user
may continue with volume reconstruction and should exercise caution when reviewing any data with
possible inaccuracies.

WARNING: When loading additional content created (surface models, comments, etc.), content is created
by another user and is not part of the original patient image data.

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PACS Integration
The Anatomage Table can import scans directly from PACS server. Tap on “Import PACS” and tap on
“Configure”. Under Server Setup, type in the PACS server AE Title, Host Name and Port. Under
Client Setup, type in the AE Title and Port.

Tap Test Connection to confirm that the connection is successful.

Please contact Anatomage with any questions regarding this process.

WARNING: Anatomage is not responsible for verifying the accuracy of patient information from
a PACS system. Anatomage also assumes no responsibility in relation to privacy requirements for
viewing and sharing patient scan information.

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User Interface and Layout

Red box outlines Rendering Window. Image rendering, surface models, and annotations will appear
in this region. Region accepts keyboard, mouse, single-touch, and multi-touch controls.

Icon Description
Application Toolbar
Opens the Application toolbar. (Open File, Import PACS,
Gross Anatomy, High Res Regional Anatomy, Case Library,
Histology, Curriculum, Prosection, Minimize, Exit
Application, and Cancel).

Layout
Tap the Layout icon to display all Layout options. 3D Layout
is selected by default.

3D Layout
Tap to view a volume rendering of the data.

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3D-2D Layout
Tap to view a split-screen view of a volume rendering of the
data and a cross-section in the axial, coronal, or sagittal plane.

2D Layout
Tap to view one cross-section at a time. Users can view cross-
sections in the axial, coronal, or sagittal plane.

The user can switch between a single 2D view and two

different 2D layouts that contain three 2D slices each. The
default slices for these split-screen layouts is Axial, Coronal,
and Sagittal. The layouts can be customized to contain slices
in Axial, Coronal, Sagittal, and Parallel planes.

3D-Histology Layout
Tap to view a split-screen view of a volume rendering of the
data and a histology slide. Any histology slides associated
with a structure will be shown when the structure is selected
from the volume rendering using a single tap.

Flythrough
Tap to view split-screen view of a volume rendering of the data
and a flythrough data set. The user can load in default
flythrough data sets when available or create custom
flythroughs if desired.

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Curved Planar Reformation

Tap to view split-screen view of a volume rendering of the data
and a curved planar reformation. Curved planar reformations
can be exported.

Spline
Tap to create a spline on the volume rendering of the data. The
user can choose the points of the spline by tapping on a
structure.

Curved Spline
Tap to create a curved spline.

Straight Spline
Tap to create a linear spline.

Screen Capture
Tap the camera icon to save a screen shot (.jpg, .png, or .bmp)
of the application using three different options.

Screen Capture with Icons

Tap the camera with icons to save a screenshot (.jpg, .png,
or .bmp) of the application that includes the Table icons.

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Screen Capture without Icons

Tap the camera without icons to save a screenshot (.jpg, .png,
or .bmp) of the application that does not include the Table
icons.

Cropped Screen Capture

Tap the scissor icon and drag across screen to select an area
and save a screenshot (.jpg, .png, or .bmp) of the application
within the selected area.

Volume Orientation
Tap to select a particular orientation. From top left going
clockwise: Coronal View, Sagittal View, Axial View.

If an orientation icon is tapped a second time, the view will be

flipped.

WARNING: Image orientation is based on scanner/DCM

definitions or redefined orientations from Invivo6 software.

1:1 Life Size Scaling

Tap icon to rescale image to life size.

WARNING: Exact scaling depends on scan size, scan

resolution, and hardware specifications.

Pin Tool
Used for placing 3D pin models in volume viewing.

To place a pin, select the pin style of choice and then

select a place on the volume. The pin may be moved by
first tapping on the pin to display a red box and again to
display a yellow sphere. Holding and dragging the red box
moves the pin's XYZ location while holding and dragging
the yellow sphere rotates the angle of the pin.

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Measurement Tool
Tap the icon to show the associated measurement icons.

The font size and color of the measurement value may be

adjusted in the Adjust Text window under the Image Control
Settings icon (p. 26).

Measurements can be made in both volume and slice mode

viewing.

WARNING: The default measurement unit will be

milllimeters (mm). Any measurement that is less than 1 mm
will be displayed in micrometers (um).

Distance Measurement Tool

Step 1: Select distance measurement tool.
Step 2: Tap on two locations on the volume. Red dots will
indicate the selected spots, and a line will appear between them
with a distance measurement. To adjust a measurement spot,
select and drag the landmark red dot.

Angle Measurement Tool

Step 1: Select angle measurement tool.
Step 2: Tap on three locations on the volume. Red dots will
indicate the selected spots, and an angle will appear
between them with an angle measurement. Distance
measurements of the angle's sides will also appear. To adjust a
measurement spot, select and drag the landmark red dot.

Delete Measurement
Step 1: Select measurement. Specified measurement will turn
red and become bold.
Step 2: Select icon to remove specified measurement.

Clear All Measurements

Select icon to clear all measurements from the volume.

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WARNING: Identification of anatomical landmarks and

structures are limited in part to image resolution and
subject to user error. To ensure correct identification of
landmarks and other fine measurements, it is
recommended that users plug-in and use a USB computer
mouse and keyboard for the most accurate possible
placement of measurement landmarks (red dots). All
measurement landmarks, including those placed using the
touchscreen interface, can be adjusted by selecting and
dragging the landmark. It is the responsibility of the user
to place or adjust the measurement landmark locations as
needed for analysis.
Dissection Tool (for segmented cadaver data)

The Dissection Tool allows the user to create custom cuts and
remove structures, or parts of structures, within the sculpt area.
After tapping the tool, the icon becomes highlighted signifying
it is enabled and the Dissection Tool dialog appears. Either a
linear cut or curved sculpt can be selected.

To make a custom sculpt:

Step 1: Hold and drag the custom sculpt anywhere on the

volume. A red line will appear outlining the sculpt area.

Step 2: Tap inside or outside the area to select dissection

boundaries. All structures in selected boundary can be
removed.

A loading screen followed by a dialog (“Select structure to

remove layer by layer!”) appears. Tap “Ok.”

Step 3: Remove structures within the sculpt area by tapping on

them.

Freehand Dissection Tool (for segmented cadaver and

DICOM data)

The Freehand Dissection Tool allows the user to create custom

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cuts on the segmented cadaver or scan volume. After tapping

the tool, the icon becomes highlighted signifying it is enabled.
To make a custom sculpt:

Step 1: Hold and drag the custom sculpt anywhere on the

volume. A green line will appear outlining the sculpt area.

Step 2: Tap inside or outside the area to remove the visible

volume on either the inside or outside of the sculpt outline,
respectively.

To enable another freehand sculpt, tap the Freehand Dissection

Tool icon again. Once the icon is highlighted, repeat steps 1
and 2 to make another freehand sculpt.

Restore Tool
Selecting this icon will restore the volume to its original state,
removing all operations.

Undo: Will undo the last structure removal action.

Redo: Will redo the last structure removal action.

Note: The undo and redo icons do not work for the Freehand
Dissection Tool.

Craniotomy Tool (For DICOM data)

Step 1: Select craniotomy tool.
Step 2: Hold and draw custom sculpt across any cranial
portion of the CT or MRI Scan.
Step 3: Release touch and software will automatically close
the custom sculpt and perform craniotomy.

WARNING: The Craniotomy Tool is meant to be used as

a Demonstration Tool only. The amount of volume
removed from a scan is dependent on the scalar range
used to view DICOM data.

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Clipping Plane Control

Tap icon to display Clipping Plane Control all Clipping Plane
icons as well as the Flip and Reset icons.

Custom Clipping Plane is activated by default.

Custom Clipping Plane

Step 1: Tap scalpel icon with the straight line to activate
custom clipping plane. The custom clipping plane is activate
by default (indicated by a blue highlight.)

Step 2: Using one touch, drag anywhere acrros the volume to

generate the custom clipping plane, defined by a blue line. The
line will update to show the current clipping definition.

Step 3: Release touch to finish defining plane.

Step 4: Select a side of the plane to remove by tapping the

volume on that side.
Repeat the above steps to create up to six (6) Custom Clipping
Planes. After the sixth plane, the seventh plane will replace the
first defined Custom Clipping Plane. The eighth will replace
the second and so forth.

Predefined Clipping Planes

Select a predefined clipping plane by tapping on the icon. The
volume will automatically be clipped in the designated
direction. From top left going clockwise: Sagittal Plane,
Coronal Plane, Axial Plane, Parallel Plane.

Parallel defines the Table surface as the clipping plane.

Only one predefined clipping plane may be applied at a time.

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Flip Clipping Plane

Tap icon to flip visibility between sides of the clipping plane.
This affects all predefined clipping planes and the most
recently defined custom clipping plane.

Reset Clipping Plane

Tap icon to remove all applied clipping planes (custom and
predefined).

Clipping Plane Slider Bar

When a clipping plane, either a predefined or a custom plane,
is active, the slider bar can be used to adjust the location of the
plane. The slider bar can be used to adjust only the most
recently defined clipping plane.

Quiz Mode
Select the quiz name (Custom Quiz, Ready Made, History)
from the first dropdown menu to select which structures will
make up the quiz.

Select the quiz type (Pick Me, Flashcards, Multiple Choice,

Game, Highlight) from the second dropdown menu.

If a student list has been imported, select the name of the

student to be quizzed from the third dropdown menu.
Tap the Customize button to create a customized quiz. Within
this dialog, the user can determine which structures to be tested
on. The user can also import or export annotated presets to
create a quiz. See “How to Make a Customized Quiz 6.0” for
more information on how to create a customized quiz.

Tap the Go button when the user is ready to begin the quiz.

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Presets
Tap to show presets numbered 1-10. Use a second tap on one
of the numbered icons to select a particular preset, or open the
Presets Menu by tapping on the cogwheel icon.

Users can create an unlimited number of presets using the

Preset Menu. Presets will automatically switch the image in
rendering window based on saved definitions. See “How to
Make a Preset 6.0” for more information on how to create and
export presets.
Explore Tool
Used for identifying segmentation and user created content.

To use the tool in the Female Full Body with Models and user
created INV files with models:
Step 1: Tap the icon to enable the tool (icon will brighten).
Step 2: Tap anywhere on the volume. The model closest to
the touch will be annotated.

To use the tool with segmented cadaver data:

Step 1:
Tap the icon to open up the Explore Tool Dialog. Next, select a
particular icon with a second tap. The icon will become
highlighted to indicate it is enabled.
Step 2:
Remove Tool
Tap anywhere on volume. Structure closest to touch location
will be removed from view.

Blood Flow Tool

Tap on a vein or artery. Blood flow will be simulated to or
from the Heart. A second tap will apply a flat color to the vein
or artery. A third tap will add annotations to all branches of the
vein or artery.

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Isolate Tool
Tap anywhere on volume. Structure closest to touch location
will be annotated and all other volume elements will be made
transparent. Tap on the same structure again to remove all
transparent structures. Tap a third time to add structures back
in again. Tap on name to enable more detailed annotations.

Step 3: To exit out of any explore tool mode, tap the enabled
tool to disable (the icon will no longer be highlighted).
Undo & Redo:
After using the Removal or Isolate Tool, tap Undo to undo the
last action or Redo to redo the last action.

The font size and color of the explore text may be adjusted in
the Adjust Text window under the Image Control Settings icon
(p. 26).
Visibility Control
Structures
Tap icon to open Volume Visibility dialog to adjust rendering
window images. User can add/remove structures in data sets
or adjust volume rendering view presets for any DCM file data
sets. See p. 31 for more information on using the Volume
Visibility dialog.

Annotations
Tap “A” icon next to any entry to turn on all annotations under
that entry.

Brightness/Contrast Slider Bars

When viewing segmented cadaver data:
Drag the upper slider bar right/left to add/remove large systems
or structures from the volume rendering. Drag the lower slider
bar left/right to add/remove the cardiovascular, nervous, and
lymphatic systems from the volume rendering.
When viewing DICOM data:
Drag the upper slider bar right/left to increase/decrease the
Brightness (density) of the volume in the Rendering Window.

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Shift the lower slider bar right/left to increase/decrease the

Contrast of the volume in the Rendering Window.

WARNING: Brightness and Contrast settings are dependent

upon the volume rendering range defined in the Image
Control Settings (p. 25).

Action Menu
Tap structure and then action menu or double tap a structure to
view action menu for selected structure. The functions of each
tool within the Action Menu are outlined below.

Structure On/Off
Tap to toggle a structure on or off. A white check mark
indicates that the structure is toggled on. A dashed check mark
indicates that the structure is toggled off.

Transparency
Tap to auto adjust surface and volume transparencies (50%
surface opacity, 0% volume opacity) for selected structure. A
blue background indicates that a transparency is applied.

Color Select
Tap downward arrow to choose a color from the drop down
color menu. Tap the color button to highlight selected
structure in chosen color.

Annotations
Tap to enable all annotations for selected structure. A blue
background indicates that annotations are applied.

Origin and Insertion

Tap to display origin and insertion points for a selected bone.
A blue background indicates that origin and insertion points
are turned on. A grayed out icon indicates no origin/insertion
for a structure.

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Blood Flow Tool

Tap to display blood flow for selected vein or artery. A blue
background indicates that the blood flow tool is activated. A
grayed out icon indicates no bloodflow for a structure.

Curved Dissection
Tap to activate the curved dissection tool, as indicated by a
blue background.

Step 1: Hold and drag the curved dissection anywhere on the

selected structure. A red line will appear outlining the sculpt
area.

Step 2: Tap inside or outside the area to select dissection

boundaries. The cut will be made only on the selected
structure.
Linear Dissection
Tap to activate the linear dissection tool, as indicated by a blue
background.

Step 1: Hold and drag anywhere on the selected structure. A

red line will appear.
Step 2: Tap on either side of the line to select which side will
be dissected. The linear cut will be made only on the selected
structure.

Reset Dissection
Tap to remove any dissections performed on the structure,
returning the structure to its natural state.

Pen Tool
Tap to open the Pen Tool Dialog. Using second tap, select a
particular Pen Tool.

Draw by dragging in rendering window.

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Predefined Draw Colors

Tap to select a predefined Pen Tool color. From top left going
clockwise: Red, White, Yellow, Blue.

Default width of Draw Stroke for all colors is 2.

Custom Pen Tool

The Custom Pen Tool allows the user to customize the color
and width of a pen.

Step 1: Tap to select a particular pen preset.

Step 2: Tap the Custom Pen Tool Settings icon to adjust color
and stroke width.

The Pen Tool will save the latest setting used for each preset.

Eraser: Tap to enable. Drag on display window to remove

pen, text, or arrow marks.

Text Tool: Tap to activate and then tap on display window to

place text. Use on-screen or external keyboard to enter text.

Arrow Tool: Tap to activate and then tap on display window to

draw arrow tail. Tap again to draw arrow head.

Undo: Tap icon to undo last drawing action.

Minimize: Tap icon to minimize Draw Tool dialog.
Exit: Tap icon to erase all drawings in the Rendering Window.

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Image Control Settings

Tap the icon to open the Image Control Settings dialog to
adjust the multi-touch and rotation controls, volume rendering
range (DICOM data only), camera projection, UI settings, and
to import student lists and enable Feature Lock.

Tap the Layout button to make adjustments to the Layout

Options and to enable Vertical Viewing Mode.

Adjust Layout: Toggle the application icons between the four

quadrants of the Anatomage Table. Icons are rotated to
accommodate users in different areas of the Anatomage Table.

Enable Vertical: Toggle between Vertical Viewing Mode and

Horizontal Viewing Mode. In Vertical Viewing Mode, icons
are rotated and condensed into categories, as shown in the
image below. Table application has slightly limited
functionality.
WARNING: If Table application detects that some DCM files
are missing, corrupt, or otherwise determined inaccurate, an
error message will appear about possible inaccurate
reconstruction. The user may continue with volume
reconstruction and should exercise caution when reviewing
any data with possible inaccuracies. An inaccurate volume
reconstruction created in Horizontal Viewing Mode will still
contain inaccuracies when viewed in Vertical Viewing Mode.

Volume Rendering Preference (for DICOM Data Only):

Min/Max: Define the minimum and maximum limits of the
scalar values for reconstructing volume from slice image data.

Anatomage recommends -500 to 1500 for CT data and 0 to

3000 for MRI data. Table 6.0 will automatically set this value
upon loading a scan.
WARNING: The values set in this Volume Rendering
Preference field will have a direct effect on how the image
data is reconstructed and displayed within the rendering
window. The rendering range should be adjusted
appropriately depending upon the modality (CT, MR, etc.)
and scanning parameters.

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Quality: When icon is selected, quality rendering is on. When

icon is not selected, performance rendering is turned on.

Apply: Enable any changes made to the rendering range or

rendering performance adjustments.

Adjust Text: Tapping the Adjust Text icon brings up the

Adjust UI Dialog. In the dialog, the user can customize the
behavior of annotations, and size and color of annotations,
measurements, and explorer text with the corresponding pull
down menus.

Link 2D and 3D view: Determines whether or not 2D cross-

sectional image will snap to structure chosen using Explorer
Tools (must be in 3D + 2D viewing mode).

Dissection Tool Labels: Determines whether annotations will

appear when removing structures via Dissection Tool.

Lead lines linked to Clipping Plane: The annotations are by

default linked to the clipping plane. If a clipping plane is
applied, any annotations turned on will only have their lead
lines appear if they are mapped to a location within a few mm
of the clipping plane. To turn this option off, tap to uncheck the
white box.

Adjust Colors: The user can apply a flat color to veins (blue),
arteries (red), nerves (yellow), and lymphs (green).

The user can also change the background color of the Volume
Rendering Window to black, white, or gray using the quick
access buttons, or to other colors using the drop down menu.

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Language Menu: The user can toggle between languages.

Currently supported languages include Chinese (Simplified),
English, French, German, Italian, Kazakh, Korean, Russian,
Spanish (Spain).

After the language has been changed, the user must adjust the
system locale.

Feature Lock: Lock specific features. The features that are

checked will be unlocked.

Define locked features using Options. Create a password for

managing use of the Feature Lock and enable it using Enable.
Password must be used for disabling Feature Lock as well. In
the event that the password is forgotten, the master password
can be used to disable Feature Lock.

Master password – AnatoTest0

Spin: Enable/Disable spin gesture. Highlighted when enabled.

Ruler: Displays a ruler along the length of the Rendering

Window. Highlighted when enabled. Scales to life-size when
1:1 life size is activated.
WARNING: Exact scaling depends on scan size, scan
resolution, and hardware specifications.

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Import Student List: Opens a dialog that allows the user to

import a Student List File (.txt).

About: Displays the Table’s software and hardware

information.
Annotation Controls (for DICOM data)

Opens Annotation dialog for enabling/disabling comment

visibility.
• Tap On/Off icon at the top left of the dialog to show or
hide all enabled annotations.
• Tap On/Off icon next to each entry to turn categories or
individual annotations On/Off.
• Tap a system or category to show associated
subsystems. Selected entry will be highlighted blue.
• User can adjust where annotation texts will appear:
Top, Bottom, Right, Left.
• Search bar in lower right of dialog allows user to search
for a particular structure. Tap Clear to clear all search
terms.
• Annotations saved with Invivo files will appear with
Comment and Marker as System and Category,
respectively.
• User can adjust coordinates of annotations by dragging
text to a new location. Tap the circle to the right of the
associated structure in the Annotation Dialog to save
the new annotation coordinates.

View Sequencer
Tap icon to import and playback View Sequences (.vseq files)
created from Invivo6 software. Use this icon to also play the
4D cases in the Case Library.

This icon can also be used to view Curriculum slides in the

Curriculum data sets.

WARNING: View Sequencer behavior is best when using the

same particular image data set that was used when initially
creating the View Sequence in Invivo6.

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Gross Anatomy

(This section contains images featuring educational content and should not be used as clinical
reference or for diagnostic purposes).

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Tap Gross Anatomy on Application toolbar to open the Full Body Anatomy menu.

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• Dialog lists all available Gross Anatomy scans with resolution.

• Tap entry name, then tap Open or double tap entry name.
• Tap Close to close dialog.

Image Adjustment
Segmented Cadaver Data
Selecting the Volume Visibility Control Icon will open the following dialog.

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• Structures are organized into systems and categories.

• Tap Checkbox icon at the bottom of the system list to turn all structures On/Off.
• Tap Checkbox icon next to each entry to turn systems, categories, or individual structures On/Off.
• Tap a system or category to show associated subsystems. Selected entry name will be highlighted blue.
• Tap grayed color wheel icon next to entry names to adjust Opacity, No Clip, and Color settings for
volumes and to toggle Origin/Insertion for bones. If adjusted, gray color wheel icon becomes colored.
No Clip: If enabled, structures cannot be
sliced through.

Transparent: Auto adjust surface and

volume transparencies (50% surface
opacity, 0% volume opacity)

Opacity: Adjust slider bars to adjust

surface and volume transparencies.
Flat Color: Choose a color from quick
access or the drop down color menu. Tap
button to highlight structure in chosen
color.

Origin and Insertion: Toggles On/Off

Origin and Insertion for selected bone
structure.

• L and R buttons in lower left hand corner allow the user to toggle On/Off the left and right structures
for select systems and categories.
• The counter-clockwise, curved arrow color wheel button restores the cadaver to its default view by

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removing any Opacity, No Clip, Color settings, and Origin/Insertion.

• The A button in the lower right corner expands the Volume Visibility dialog to include Annotations.
When the dialog is expanded: the circled A button toggles On/Off Annotation Visibility, the downward
and upward arrow buttons allows the user to import and export custom annotations, and the counter-
clockwise, curved arrow allows the user to restore to default annotations. See p. 34 for additional
details on Annotations.
• Search bar in lower right corner allows user to search for a particular structure. Tap X to clear all search
terms.

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Annotations
Annotations can be activated in the Volume Visibility Dialog. Annotations are linked with clipping
planes. Chosen annotations will be displayed, but lead lines will only appear when associated volume
is close to the clipping plane. If no clipping plane is defined, lead lines will always appear.

• Tap the “A” button at the bottom right of the Volume Visibility Dialog to expand the dialog to
include Annotations.
◦ Tap the circled “A” button at the lower right of the dialog to show/hide all enabled
annotations.
◦ Tap the “A” icon next to each entry to enable all annotations under that entry.
◦ Tap “New Annotation” to create your own annotation. Type out the desired annotation text
and tap anywhere on the volume to select annotation coordinate.
• Tap on the settings tab and tap “Adjust Text” to adjust where annotation texts will appear (Top,
Bottom, Right, Left) and how annotation text will appear (Size, Color).
• Annotations saved with Invivo will appear with Comment and Marker as System and Category,
respectively.
• User can adjust coordinates of annotations by tapping the Ellipsis Button to the right of the
annotation and then “Edit Location”. A dialog will appear prompting “Edit Location” and the
user can tap anywhere on the structure to change its location. When the Annotation (.csv) file
is exported, the new location(s) will be updated.
WARNING: Saving the new coordinates for an annotation will overwrite the associated
information on the currently loaded .csv annotation spreadsheet. A back up annotation
spreadsheet is available on the Table desktop.

Load Default Load in default annotations (.csv file) from the Presets, Annotations folder on
Annotations the Table desktop.

Load Annotation File Load in custom annotations (.csv file with character set “UTF-8”, separated
by tab, and set to “quoted field as text”) created using Invivo6 software (or
other software).

Customizing Annotations can be added, removed, or edited by opening the annotation file
Annotations (for linked to the desired data set (.csv file with character set “UTF-8”, separated
DICOM Data) by tab and set to “quoted field as text”) in OpenOffice. Separate annotation
files can be found for the Male Full Body (Caucasian) scan, Female Full
Body Scan, Male Full Body (Asian) scan, Female Full Body with models
scan, as well as each of the High Res Regional scans. For more instruction
on customizing annotations, consult the “How to Make and Import Custom
Annotations 6.0” PDF file.

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WARNING: Open same data set that was used to create annotation file in order to
preserve correct coordinate system.

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Female Full Body with Models and DCM/INV Files

(This section contains images featuring educational content and should not be used as clinical
reference or for diagnostic purposes).

Selecting the Volume Visibility Control Icon will open the following dialog.

Volume Visibility Turn On/Off volume rendering.

All Models Visibility Turn On/Off model visibility.
Volume Renderings Collection of different volume rendering presets (filters.) Each can be
(Gray Scale, X-Ray, adjusted using the Brightness and Contrast slider bars on the main
Transparent Soft Tissue, Table user interface. Users can create their own custom volume
Transparent Hard Tissue, rendering presets using the Invivo6 software. This setting can be
Transparent Soft + Hard, exported as a volume configure file (.vcf). Custom loads in a .vcf file.
etc.)
WARNING: Ultra High Quality Rendering (UHQ) requires an NVIDIA graphics
card to function. If Table application detects that some DCM files are missing,
corrupt, or otherwise determined inaccurate, an error message will appear about
possible inaccurate reconstruction. The user may continue with volume
reconstruction and should exercise caution when reviewing any data with possible
inaccuracies.

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CT Settings (Only available in slice mode for DCM image sets)

Tap to show all available radiology presets. Using a second tap, select a particular
radiology preset. The brightness and contrast can be adjusted using the slider bars to
the right.

Available CT presets: Brain, Abdomen, Mediastinum, Bone, Lung, Liver

WARNING: CT presets are dependent upon original scanner/DCM HU

definitions. User is responsible for adjusting rendering range and settings
to ensure all structures are visible in the scan.

WARNING: MRI scans will automatically have their volume rendering

range adjusted for optimal viewing. The user can specify a specific
rendering range by manually entering the minimum and maximum
values in the settings menu.

Model Settings Open Visual Property Dialog for currently selected

digital surface model.
Visibility
• Turn On/Off model visibility
• Adjust the Opacity of a particular model

Rendering
• Adjust Mode: Surface, Wireframe, or Points
• Adjust shading: Smooth or Flat
• Turn On/Off Back Face Culling
• Enable No Clipping (clipping planes do not
affect model)

Material
• Adjust surface model appearance by
changing color and light settings

Texture
• Turn On/Off texture applied to model
• Turn On/Off shading applied to model

Tapping OK will close the Visual Property window

and save the changed settings.

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Preset Dialog
Save Preset Create an unlimited number of presets: saves
volume orientation, clipping planes, freehand
dissection cuts, model visibility, volume
visibility, annotations, and pins.
Select All Selects all Presets, as indicated by a blue
number to the left of the dialog.
Remove Selected Delete the currently selected preset(s).
Presets
Import VPF Load in preset file (.vpf).
Export VPF Export all selected presets as a visibility
preset file (.vpf).

WARNING: Preset behavior is best when using the same particular image data
set and volume rendering range that was used when initially creating the presets.

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High Resolution Regional Anatomy

(This section contains images featuring educational content and should not be used as clinical
reference or for diagnostic purposes).

Tap High Res Regional Anatomy on Application Toolbar to open the Regional Dialog.

• Dialog lists all available regional scans with Region, Resolution, Size, and Gender of original
scan.
• Tap entry name, then tap Open or double tap entry name.
• Tap Close to close dialog.

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Case Library
(This section contains images featuring educational content and should not be used as clinical
reference or for diagnostic purposes).

The Case Library is a collection of scans showing various clinical case examples. Through the use of contrast
media and other imaging techniques, real patient anatomical features are highlighted. Each scan comes with
scan information, if available.
Select Case Library from Application toolbar to open the Case Library dialog.

• Scans are sorted by region (Head & Neck, Thorax, etc.) and type (4D, Comparison, etc.)
• Tap on a divisional icon to view all associated scans.
• Select scan name to display additional clinical information (Info, History, Findings, Impression, Other)
along with scan resolution and size.
• Tap MRI, Fracture, Cancer, or Pediatrics to see scans organized by tag.
• To search the Case Library, type text into the bottom left search bar, then tap Apply.

• Tap on the icon to access Folders category. Anatomage preinstalls three default folders
including Recently Opened, Anatomage Favorites, and Recently Added.

• To create your own folder, tap the button and enter in the desired Folder name.

• To remove your own folder, tap the button.

• To add a case to a folder, tap the button and choose the desired folder.

• To remove a case to a folder, tap the button.

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• To export a custom folder (.txt file), open the custom folder and tap the button. A dialog will
appear allowing the user to choose the name and location of the .txt file.

• To import a custom folder (.txt file), tap the button under the folder’s category and locate the .txt
file for the desired custom folder.
• Recently opened scans are saved under the Recently Opened folder.
Comparison Displays three related scans linked in movement, clipping plane,
brightness/contrast, and volume rendering mode for comparison. Note:
Comparison Cases are not compatible with Vertical Viewing Mode.

4D scans Scans showing movement

To Play 4D scan:

Step 1: Tap the View Sequencer icon .

Step 2: Tap to start/pause movement. Tap to

loop playback.

Step 3: Tap to move forward one frame. Tap to

move backward one frame.

Step 4: Tap to cut to the last frame. Tap to

return to the first frame in the sequence.

Step 5: Tap the red X in the upper right to close dialog.

User can rotate or clip volume while video loop is playing. Video
playback will pause when user is rotating volume. Pause
playback when not viewing scan to conserve computer memory.

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Histology Library
(This section contains images featuring educational content and should not be used as clinical
reference or for diagnostic purposes).

The Histology Library is a collection of slides showing various physiological and pathological examples with
the use of various microscopic and staining techniques. Each slide comes with information, if available.
Select Histology from Application toolbar to open the Histology Library dialog.

• Slides are sorted by region (Cardiovascular, Connective Tissue, Reproductive, etc.) and type
(Pediatric).
• Tap on a divisional icon to view all associated slides.
• Select scan name to display additional information, including a larger preview image, and microscopic
technique/stain when available.
• To search the Histology Library, type text into the bottom left search bar.

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Curriculum
The Curriculum consists of a set of single scans with pre-made annotations and view sequences,
provided by Anatomage. Scans are sorted by region (Thorax, Upper Limb, etc) and system (skeletal,
muscular, etc). The curriculum is intended for teaching purposes.

(This section contains images featuring educational content and should not be used as clinical
reference or for diagnostic purposes).

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Table Application Troubleshooting

This section discusses common software troubleshooting issues.

For all troubleshooting, be sure to follow the safety guidelines outlined in the Safety Instructions
and Warnings section of the hardware manual.

Issue With Problem Action

Check Internet connection. If Internet is connected, try
Error Message: Server is not responding
again later.
Installation Error Message: Please run as
Run the application as administrator.
administrator to activate software
Error Message: Invalid Authorization code Check license code and try again.
Error Message: Error: Cannot read this file Check if this file is supported by Table6.0.
File Operations
Error Message: Failed to read DICOM file! Check if this file is supported by Table6.0.
Error Message: Can't detect hardware Check if graphics card meets system requirements.
acceleration for OpenGL support! Check if latest driver is installed for graphics card.
Image is distorted Switch to another view and switch back.
Grayscale image shows up for all rendering Check if graphics card meets system requirements.
presets Check if latest driver is installed for graphics card.
Image Rendering
Warning message: 3D reconstruction may
Check if the DICOM files are exported correctly.
not work!
Keep a maximum of five applications open at any given
Slow performance time. Pause loop playback for 4D scans when not
viewing.
Restart system and see if problem persists.
Note the error code given and learn more at
support.microsoft.com
Computer Blue screen
Use Windows install disc/USB drive to reformat the
computer. Contact Anatomage for new Table
Application authorization code(s).

Contact Anatomage at (408) 885-1474 for additional support.

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