Project Report
Detection of Brain Tumor By using Matlab GUI
Submitted by : Zarsha Habib(2k20-BMET-28)
Ayesha Khalid(2k20-BMET-36)
Tehreem Afzal(2k20-BMET-44)
Submitted To : Sir Zeeshan Haider.
Subject : Bio Medical Imaging Techniques.
Semester #06.
Department: Biomedical Engineering Technology.
Detection of Brain Tumor
Introduction :
Brain Tumor:
Symptoms of a brain Tumor:
function varargout = Brain_Tumor_Detector(varargin)
% BRAIN_TUMOR_DETECTOR MATLAB code for Brain_Tumor_Detector.fig
% BRAIN_TUMOR_DETECTOR, by itself, creates a new BRAIN_TUMOR_DETECTOR
or raises the existing
% singleton*.
%
% H = BRAIN_TUMOR_DETECTOR returns the handle to a new
BRAIN_TUMOR_DETECTOR or the handle to
% the existing singleton*.
%
% BRAIN_TUMOR_DETECTOR('CALLBACK',hObject,eventData,handles,...) calls the
local
% function named CALLBACK in BRAIN_TUMOR_DETECTOR.M with the given
input arguments.
%
% BRAIN_TUMOR_DETECTOR('Property','Value',...) creates a new
BRAIN_TUMOR_DETECTOR or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before Brain_Tumor_Detector_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to Brain_Tumor_Detector_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help Brain_Tumor_Detector
% Last Modified by GUIDE v2.5 23-Feb-2022 05:01:50
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @Brain_Tumor_Detector_OpeningFcn, ...
'gui_OutputFcn', @Brain_Tumor_Detector_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before Brain_Tumor_Detector is made visible.
function Brain_Tumor_Detector_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to Brain_Tumor_Detector (see VARARGIN)
% Choose default command line output for Brain_Tumor_Detector
handles.output = hObject;
% Update handles structure
guidata(hObject, handles);
% UIWAIT makes Brain_Tumor_Detector wait for user response (see UIRESUME)
% uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = Brain_Tumor_Detector_OutputFcn(hObject, eventdata,
handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% --- Executes on button press in select_mage.
function select_mage_Callback(hObject, eventdata, handles)
% hObject handle to select_mage (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global img1 img2
[path, nofile] = imgetfile();
if nofile
msgbox(sprintf('Image not found!!!'), 'Error', 'Warning');
return
end
img1 = imread(path);
img1 = im2double(img1);
img2 = img1;
axes(handles.axes1);
imshow(img1);
title('\fontsize{20}\color[rgb]{1,0,1} MRI Image');
% --- Executes on button press in meadian_filtering.
function meadian_filtering_Callback(hObject, eventdata, handles)
% hObject handle to meadian_filtering (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global img1
axes (handles.axes2)
if size(img1,3) == 3
img1 = rgb2gray(img1);
end
K = medfilt2(img1);
axes(handles.axes2);
imshow(K);title('\fontsize{20}\color[rgb]{1,0,1} Med Filtter');
% --- Executes on button press in edge_detection.
function edge_detection_Callback(hObject, eventdata, handles)
% hObject handle to edge_detection (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global img1
axes(handles.axes3);
if size(img1,3) == 3
img1 = rgb2gray(img1);
end
K = medfilt2(img1);
C = double(K);
for i = 1:size(C,1)-2
for j = 1:size(C,2)-2
%Sobel mask for X-direction
Gx = ((2*C(i+2,j+1)+ C(i+2,j)+C(i+2,j+2))-(2*C(i,j+1)+C(i,j)+C(i,j+2)));
%Sobel mask for Y-Dirction
Gy = ((2*C(i+1,j+2)+ C(i,j+2)+C(i+2,j+2))-(2*C(i+1,j)+C(i,j)+C(i+2,j)));
%The Gradient of The Image
% B(i,j) abs(Gx) + abs(Gy)
B(i,j) = sqrt(Gx.^2+Gy.^2);
end
end
axes(handles.axes3)
imshow(B);title('\fontsize{20}\color[rgb]{1,0,1} Edge Detection');
% --- Executes on button press in tumor_detection.
function tumor_detection_Callback(hObject, eventdata, handles)
% hObject handle to tumor_detection (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
global img1
axes(handles.axes4);
K = medfilt2(img1);
bw = imbinarize(K, 0.7);
label = bwlabel(bw);
stats = regionprops(label,'Solidity','Area');
density = [stats.Solidity];
area = [stats.Area];
high_dense_area = density > 0.5;
max_area = max(area(high_dense_area));
tumor_label = find(area == max_area);
tumor = ismember(label,tumor_label);
se = strel('square',5);
tumor = imdilate(tumor,se);
Bound = bwboundaries(tumor,'noholes');
imshow(K);
hold on
for i = 1:length(Bound)
plot(Bound{i}(:,2),Bound{i}(:,1), 'y','linewidth',1.75)
end
title('\fontsize{20}\color[rgb]{1,0,1} Tumor Detected !!!');
hold off
axes(handles.axes
Conclusion:
By using Matlab is fast algorithm used
for detection of tumor from MRI images
in a very short time. At the end tumor is
mapped onto original greyscale image with
255 intensity to make tumor visible in the
image
