(base) sam@MacBook-Pro BT % conda env create -f environment.
yml
Channels:
- defaults
Platform: osx-64
Collecting package metadata ([Link]): done
Solving environment: done
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Installing pip dependencies: \ Ran pip subprocess with arguments:
['/opt/anaconda3/envs/slime/bin/python', '-m', 'pip', 'install', '-U', '-r',
'/Users/sam/BT/[Link]', '--exists-action=b']
Pip subprocess output:
Collecting numpy (from -r /Users/sam/BT/[Link]
(line 1))
Using cached numpy-2.0.0-cp310-cp310-macosx_10_9_x86_64.[Link]
(60 kB)
Collecting matplotlib (from -r /Users/sam/BT/[Link]
(line 2))
Using cached matplotlib-3.9.0-cp310-cp310-
macosx_10_12_x86_64.[Link] (11 kB)
Collecting pandas (from -r /Users/sam/BT/[Link]
(line 3))
Using cached pandas-2.2.2-cp310-cp310-macosx_10_9_x86_64.[Link]
(19 kB)
Collecting geopandas (from -r
/Users/sam/BT/[Link] (line 4))
Using cached [Link] (2.2 kB)
Collecting networkx (from -r /Users/sam/BT/[Link]
(line 5))
Using cached [Link] (5.1 kB)
Collecting scipy (from -r /Users/sam/BT/[Link] (line
6))
Using cached scipy-1.14.0-cp310-cp310-macosx_10_9_x86_64.[Link]
(60 kB)
Collecting empiricaldist (from -r
/Users/sam/BT/[Link] (line 7))
Using cached [Link] (12 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata ([Link]): started
Preparing metadata ([Link]): finished with status 'done'
Collecting contourpy>=1.0.1 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached contourpy-1.2.1-cp310-cp310-macosx_10_9_x86_64.[Link]
(5.8 kB)
Collecting cycler>=0.10 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached [Link] (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached fonttools-4.53.0-cp310-cp310-
macosx_10_9_universal2.[Link] (162 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_10_9_x86_64.[Link]
(6.4 kB)
Requirement already satisfied: packaging>=20.0 in
/opt/anaconda3/envs/slime/lib/python3.10/site-packages (from matplotlib->-r
/Users/sam/BT/[Link] (line 2)) (23.2)
Requirement already satisfied: pillow>=8 in
/opt/anaconda3/envs/slime/lib/python3.10/site-packages (from matplotlib->-r
/Users/sam/BT/[Link] (line 2)) (10.3.0)
Collecting pyparsing>=2.3.1 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached [Link] (5.1 kB)
Requirement already satisfied: python-dateutil>=2.7 in
/opt/anaconda3/envs/slime/lib/python3.10/site-packages (from matplotlib->-r
/Users/sam/BT/[Link] (line 2)) (2.9.0.post0)
Requirement already satisfied: pytz>=2020.1 in
/opt/anaconda3/envs/slime/lib/python3.10/site-packages (from pandas->-r
/Users/sam/BT/[Link] (line 3)) (2024.1)
Collecting tzdata>=2022.7 (from pandas->-r
/Users/sam/BT/[Link] (line 3))
Using cached [Link] (1.4 kB)
Collecting pyogrio>=0.7.2 (from geopandas->-r
/Users/sam/BT/[Link] (line 4))
Using cached [Link] (352 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata ([Link]): started
Preparing metadata ([Link]): finished with status 'error'
Pip subprocess error:
error: subprocess-exited-with-error
× Preparing metadata ([Link]) did not run successfully.
│ exit code: 1
╰─> [27 lines of output]
Traceback (most recent call last):
File "/opt/anaconda3/envs/slime/lib/python3.10/site-packages/pip/_vendor/
pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/opt/anaconda3/envs/slime/lib/python3.10/site-packages/pip/_vendor/
pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/opt/anaconda3/envs/slime/lib/python3.10/site-packages/pip/_vendor/
pyproject_hooks/_in_process/_in_process.py", line 149, in
prepare_metadata_for_build_wheel
return hook(metadata_directory, config_settings)
File "/private/var/folders/j4/knwgm9f915q6kcwypd8hr25m0000gn/T/pip-
build-env-7jqm70c8/overlay/lib/python3.10/site-packages/setuptools/
build_meta.py", line 368, in prepare_metadata_for_build_wheel
self.run_setup()
File "/private/var/folders/j4/knwgm9f915q6kcwypd8hr25m0000gn/T/pip-
build-env-7jqm70c8/overlay/lib/python3.10/site-packages/setuptools/
build_meta.py", line 497, in run_setup
super().run_setup(setup_script=setup_script)
File "/private/var/folders/j4/knwgm9f915q6kcwypd8hr25m0000gn/T/pip-
build-env-7jqm70c8/overlay/lib/python3.10/site-packages/setuptools/
build_meta.py", line 313, in run_setup
exec(code, locals())
File "<string>", line 154, in <module>
File "<string>", line 129, in get_gdal_config
File "<string>", line 85, in get_gdal_config
File "<string>", line 85, in <dictcomp>
File "<string>", line 39, in read_response
File "/opt/anaconda3/envs/slime/lib/python3.10/[Link]", line 420, in
check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/opt/anaconda3/envs/slime/lib/python3.10/[Link]", line 501, in
run
with Popen(*popenargs, **kwargs) as process:
File "/opt/anaconda3/envs/slime/lib/python3.10/[Link]", line 969, in
__init__
self._execute_child(args, executable, preexec_fn, close_fds,
File "/opt/anaconda3/envs/slime/lib/python3.10/[Link]", line 1845, in
_execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'gdal-config'
[end of output]
note: This error originates from a subprocess, and is likely not a problem with
pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
failed
CondaEnvException: Pip failed
(base) sam@MacBook-Pro BT % conda activate slime
(slime) sam@MacBook-Pro BT % conda env update --name slime --file
[Link] --prune
Channels:
- defaults
Platform: osx-64
Collecting package metadata ([Link]): done
Solving environment: done
Installing pip dependencies: - Ran pip subprocess with arguments:
['/opt/anaconda3/envs/slime/bin/python', '-m', 'pip', 'install', '-U', '-r',
'/Users/sam/BT/[Link]', '--exists-action=b']
Pip subprocess output:
Collecting numpy (from -r /Users/sam/BT/[Link]
(line 1))
Using cached numpy-2.0.0-cp310-cp310-macosx_10_9_x86_64.[Link]
(60 kB)
Collecting matplotlib (from -r /Users/sam/BT/[Link]
(line 2))
Using cached matplotlib-3.9.0-cp310-cp310-
macosx_10_12_x86_64.[Link] (11 kB)
Collecting pandas (from -r /Users/sam/BT/[Link]
(line 3))
Using cached pandas-2.2.2-cp310-cp310-macosx_10_9_x86_64.[Link]
(19 kB)
Collecting geopandas (from -r
/Users/sam/BT/[Link] (line 4))
Using cached [Link] (2.2 kB)
Collecting networkx (from -r /Users/sam/BT/[Link]
(line 5))
Using cached [Link] (5.1 kB)
Collecting scipy (from -r /Users/sam/BT/[Link] (line
6))
Using cached scipy-1.14.0-cp310-cp310-macosx_10_9_x86_64.[Link]
(60 kB)
Collecting empiricaldist (from -r
/Users/sam/BT/[Link] (line 7))
Using cached [Link] (12 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata ([Link]): started
Preparing metadata ([Link]): finished with status 'done'
Collecting contourpy>=1.0.1 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached contourpy-1.2.1-cp310-cp310-macosx_10_9_x86_64.[Link]
(5.8 kB)
Collecting cycler>=0.10 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached [Link] (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached fonttools-4.53.0-cp310-cp310-
macosx_10_9_universal2.[Link] (162 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_10_9_x86_64.[Link]
(6.4 kB)
Requirement already satisfied: packaging>=20.0 in
/opt/anaconda3/envs/slime/lib/python3.10/site-packages (from matplotlib->-r
/Users/sam/BT/[Link] (line 2)) (23.2)
Requirement already satisfied: pillow>=8 in
/opt/anaconda3/envs/slime/lib/python3.10/site-packages (from matplotlib->-r
/Users/sam/BT/[Link] (line 2)) (10.3.0)
Collecting pyparsing>=2.3.1 (from matplotlib->-r
/Users/sam/BT/[Link] (line 2))
Using cached [Link] (5.1 kB)
Requirement already satisfied: python-dateutil>=2.7 in
/opt/anaconda3/envs/slime/lib/python3.10/site-packages (from matplotlib->-r
/Users/sam/BT/[Link] (line 2)) (2.9.0.post0)
Requirement already satisfied: pytz>=2020.1 in
/opt/anaconda3/envs/slime/lib/python3.10/site-packages (from pandas->-r
/Users/sam/BT/[Link] (line 3)) (2024.1)
Collecting tzdata>=2022.7 (from pandas->-r
/Users/sam/BT/[Link] (line 3))
Using cached [Link] (1.4 kB)
Collecting pyogrio>=0.7.2 (from geopandas->-r
/Users/sam/BT/[Link] (line 4))
Using cached [Link] (352 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata ([Link]): started
Preparing metadata ([Link]): finished with status 'error'
Pip subprocess error:
error: subprocess-exited-with-error
× Preparing metadata ([Link]) did not run successfully.
│ exit code: 1
╰─> [27 lines of output]
Traceback (most recent call last):
File "/opt/anaconda3/envs/slime/lib/python3.10/site-packages/pip/_vendor/
pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/opt/anaconda3/envs/slime/lib/python3.10/site-packages/pip/_vendor/
pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/opt/anaconda3/envs/slime/lib/python3.10/site-packages/pip/_vendor/
pyproject_hooks/_in_process/_in_process.py", line 149, in
prepare_metadata_for_build_wheel
return hook(metadata_directory, config_settings)
File "/private/var/folders/j4/knwgm9f915q6kcwypd8hr25m0000gn/T/pip-
build-env-q132c6a_/overlay/lib/python3.10/site-packages/setuptools/
build_meta.py", line 368, in prepare_metadata_for_build_wheel
self.run_setup()
File "/private/var/folders/j4/knwgm9f915q6kcwypd8hr25m0000gn/T/pip-
build-env-q132c6a_/overlay/lib/python3.10/site-packages/setuptools/
build_meta.py", line 497, in run_setup
super().run_setup(setup_script=setup_script)
File "/private/var/folders/j4/knwgm9f915q6kcwypd8hr25m0000gn/T/pip-
build-env-q132c6a_/overlay/lib/python3.10/site-packages/setuptools/
build_meta.py", line 313, in run_setup
exec(code, locals())
File "<string>", line 154, in <module>
File "<string>", line 129, in get_gdal_config
File "<string>", line 85, in get_gdal_config
File "<string>", line 85, in <dictcomp>
File "<string>", line 39, in read_response
File "/opt/anaconda3/envs/slime/lib/python3.10/[Link]", line 420, in
check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/opt/anaconda3/envs/slime/lib/python3.10/[Link]", line 501, in
run
with Popen(*popenargs, **kwargs) as process:
File "/opt/anaconda3/envs/slime/lib/python3.10/[Link]", line 969, in
__init__
self._execute_child(args, executable, preexec_fn, close_fds,
File "/opt/anaconda3/envs/slime/lib/python3.10/[Link]", line 1845, in
_execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'gdal-config'
[end of output]
note: This error originates from a subprocess, and is likely not a problem with
pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
failed
