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Laser femtochemistry
Zewail AH.
Science. 1988 Dec 23;242(4886):1645-53. doi: 10,1126/science.242.4886.1645.
PMID: 17730575 Zewail [au] AND (Nature [journal] OR Science [journal])
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Four-dimensional electron microscopy.
Zewail AH.
Science. 2010 Apr 9;328(5975):187-93. doi: 10.1126/science.116613:
PMID: 20378810 — Review aia technology Information
journal] OR Science [journal]) AND (2004 [dp] OR 2017 [dp]) NOT review [pt]
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LJ Imaging rotational dynamics of nanoparticles in liquid by 4D electro’
1 microscopy.
Fu X, Chen B, Tang J, Hassan MT, Zewail AH.
Science. 2017 Feb 3;355(6324):494-498. doi: 10.1126/science.aah3582.
PMID: 28154074 Free article.
Ultrafast electron crystallography of interfacial wate
Lobastov VA, Vigliotti F, Chen S, Zewail AH. jew Text Document - Notepad
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“femtosecond” AND Zewail [au] AND (Nature [journal] OR Science [journal])
Zewail [au] AND (Nature [journal] OR Science [journal])
Zewail [au] AND (Nature [journal] OR Science [journal]) AND (2004 [dp] OR 2017 [dp]) NOT review [pt] | ~ 20perpage~ Sort by Default order +
Was this helpful? he =
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mouse Mouse)
AU016757, Myc2, Niard, Nird, bHLHe39 NP_001170823.1. GI: 293620264
Nucleotide PubMed Taxonomy
t Identical Proteins FASTA Senne
034979.3 Gl: 71834865
Nucleotide PubMed Taxonomy
|}
Proteins FASTA NP_034979.3
FASTA Graphics
NP_@34979 454 aa linear ROD 21-MAY-2022
myc proto-oncogene protein isoform a [Mus musculus].
REFSEQ: accession NM @10849.4
‘musculus (house mouse)
5 Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
jeria; Euarchontoglires; Glires; Rodentia; Myomorpha;
-idae; Murinae; Mus; Mus.
to 454)
oY, Zhou X, Xu T, Liu W and Su X.
thic pulmonary fibrosis via oe rio SE SUSHIL,
NP_@34979
linear
myc proto-oncogene protein isoform a | thus musculus].
__NP_@34979 |
[email protected] |
REFSEQ: accession NM 010849.4
RefSeq.
's musculus (house mouse)
‘Mus musculus
aryota; Metazoa; Chordata; Craniata; Vertebrata;
ia; Eutheria; Euarchontoglires; Glires; Rodenti
3 Muridae; Murinae; Mus; Mus.
ss 1 to 454)
see Y, Zhou X, Xu T, Liu W ane
hi bro mere irs arse em rata muscusasag
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ryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
lia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
idea; Muridae; Murinae; Mus; Mus.
1 (residues 1 to 454)
in H, Tang Y, Mao Y, Zhou X, Xu T, Liu W and Su x.
-9-Sp-mediated TBPL1
_ Signal 93, 110274 (2¢22)
: C-MYC induces idiopathic pulmonary fibrosis via modulation
R-9-5p-mediated TEPL1.
idues 1 to 454)
Lu J, Alencastro F, Roberts A, Fiedor 3, Carroll P,
RN, Ranganathan S, Torbenson M, Duncan AW and Prochownik
iil Sequence: NP_034979.3
Ew Granhins Hi
Open link in new tab
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linear ROD 21-MAY-;
usculus].
Save link as...
Copy link address
Copy Ctrl+C
| Copy link to highlight
arch Google for "FASTA" Send to: ~
Change region shown
gene protein isoform a [Mus musculus]
bINP_O34979.3
4 Graphics
iprotein isoform a [Mus musculus]
PYFECDEEENFYHOOQOSELOPPAPSEDINKKFEL
SSTADQLEMMTELLGGDMVNOSFICDPDDETF
PARGHSVCSTSSLYLODLTAMASECIOPSWV
PEPLVLMEETPPTISSDSEEEQEDEEETDVV Sava ini
AAPPSTRKDYPAAKRAK LOSGRVLKQ
ERSFFALROQTPELENNEKAPKVVILKKATAYILS
Analyze this sequence
window
k in incognito wine
Artic
C-M? link to highlight
via COBY link to highligh
arch Google for “Run BLA’
Ende print
induc
cMy spect
and activation [SignanTransduet) BLAST ® » blastp suite
blastn blastx tblastn
Standard Protein BLAST
tblastx
BLASTP programs search protein databases using a proteil
Enter Query Sequence
Enter accession number(s), gi(s), or FASTA sequence(s) @ clear
NP_034979.3
Query subrange @
From
= a To
OF. upload file Choose File | No file chosen e
dob Title
Enter a @ title for your BLAST search @
Allin two or more sequences @
Search Set
Standard databases (nr etc.) MM
Experimental databases | 7 expenmentail | > For more i
¢ | Protein Data Bank proteins(pdb) ui Hs vi) 8
| nism - z fis
| a [ human ll {i jO exclude
| i i |O) exclude
Enter organism common name, binomial, or tax id. Only 20 top taxa will be shown. @
O Models (XM/XP) (_) Non-redundant RefSeq proteins (wp) _)} Uncultured/environn
> blastp (protein-protein BLAST)
® PSI-BLAST (Position-Specific Iterated BLAST)
PHI-BLAST (Pattern Hit Initiated BLAST)
DELTA-BLAST (Domain Enhanced Lookup Time Accelerated BLAST)
aBLAST algorithm @ General Parameters
| Max target | 500 v |
| sequences ae
; Select the maximum number of aligned sequences to display 9
Short queries
Automatically adjust parameters for short input sequences @
| Expect threshold . fate-8 10) Toe
S|
3v |®
Word size
| Maxmatchesina {5
oe [Link] says
Your organism was not found in the taxonomic lookup. Please, sel
valid organism from the suggestions “Standard databases (nr etc.): dha () Experimental database
| Protein Data Bank proteins(pdb)
‘human (taxid:9606)
protein BLAST)
T (Position-Specific Iterated BLAST)
F Hit Initiated BLAST)
en ane eR Le)
select all 15 sequences selected ; _
Scientific Max 7
Description Nana Score |S!
me v v
sture of apo OmoMYC [Homo sapiens} Homo sapiens ME 4
The crystal structures of Human MYC:MAX bHLHZip complex [Homo sapiens] Homo sapiens 110 1
Homo sapiens 109 1
(Crystal structure of Myc-Max recognizing DNA [Homo sapiens]
Homo sapiens 105 10
‘Chain A. Max protein [Homo sapiens]
Homo sapiens 100 10
Homo sapiens 98.7 98.
@ Max bHLH domain in complex with 5-carboxyl cytosine DNA [Ho... Homo sapiens 981 98.4
Cognate Dna Through A Dimeric B/hih/z Domain [Homo sapiens] Homo sapiens 97.6 97.6
Homo sapiens 95.6
man Max-Dna Complex: New Insights Into Mechanism.. Homo sapiens 91.4
€ in complex with N-Myc [Homo sapiens]
plor Promoter [Homo sapiens}
Homo sapiens he DNA [Ho....
Scientific
Name
v
Homo sapiens
Homo sapiens
Homo sapiens
Homo sapiens
Homo sapiens
Homo sapiens
Homo sapiens
Homo sapiens
Homo sapiens
Max
Score
v
118
110
109
105
100
98.7
98.1
97.6
95.6
91.4
Total
v
118
110
109
105
100
98.7
98.1
97.6
95.6
Query E
Score Cover value
s v vw
19% 1e-32
19% 5e-30
18% 9e-30
18% | 2¢e-28
17% 26-26
18% 8e-26
18% 2e-25
18% 3e-25
16% 1e-24
15% 4e-23
91.4
Per.
Ident
Vv
88.89%
93.10%
92.68%
42.35%
40.74%
40.24%
39.29%
39.29%
40.26%
43.66% |
Scientific
Query E
_ Name “Score Score Cover value
mi | vii v Vv
ment | | wiht |
Homo sapiens ail 18 19% 16-32
Homosapiens 110 110 19% | 5e-30
Homo sapiens 109 109 18% 9e-30
Homo sapiens 105 105 18% 2e-28
Homo sapiens 100 100 17% 2e-26
Homosapiens 98.7 98.7 18% | 8e-26
.. Homo sapiens 98.1 98.1 18% 20-25
] : Homo sapiens 97.6 97.6 18% 3e-25
mo sz 95.6 95.6 16% | 1e-24
914 15% 46-23
Cee RT
Max Total
a4
a) 4
iy
93.10%
92.68%
42.35%
40.74%
40.24%
39.29%
39.29% 8
L Scientific Max — Total
Name Score Score value Ident
v Vv vw
Homo sapiens
Homo sapiens 93.10% 94
Homo sapiens 92.68% 88
Homo sapiens 42.35% 87
Homo sapiens
Homo sapien:
.. Homo sapiens
Homo sapiens
Homo sapiens
Wiiindlae diana Local Alignment
Local alignment tools find one, or more, alignm
aligned. They are can align protein and nucleot
Water (EMBOSS)
EMBOSS Water uses the Smith-Waterman ;
alignment of two sequences.
Launch Water
tt Open link in new tab
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Beene (EMBOS i een
Save link as...
EMBOSS Mate! © nts
iilarities b
LALIGN applica "*"!
Tiibeheleeten!
/psdi/emboss water Advanced
FASTA +
Chain A, PROTEIN (MYOD BHLH DOMAIN)
PDB: 1MDY_A
GenPept Identical Pi
eC Mm sa Mma Te ist nit st
AR a SES es
Copy S
Copy link to highlight
Search Google for "> pdb|1MDYIA Chain A, PROTEIN (MYOD BE
Print.
Inspect zv x |Bzex| Suvix| Smx| oS
1) [Link]/protein/NP_034979 32report=fasta
myc proto-oncogene protein isoform a [Mus musculus]
NCBI Reference Sequence: NP_034979.3
Identical Proteins Graphics
rere sere om en ete)
aan
HSPLVLKRCHVSTHQHNYAAPPSTRKD)
Copy link to highlight
MMe aa cag ey ag ta
Search Google for ">NP_034979.3 myc proto-oncogene protein isoform aa"
Inspect Sa mraz]
Enter or paste your first protein sequence in any supported format:
|) >pdb|MDYIA Chain A, PROTEIN (MYOD BHLH DOMAIN)
|) MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNORLPKVEILRNAIRYIEGLOALLRD Input form Web services Help & Documa
# Rundate: Wed 25 May 2022 [Link]
# Commandlinet water
# auto
# stdout
# asequence emboss_water-120220525-172949-0932-
# bsequence emboss_water+120220525-172949-6932-
# datafile EBLOSUM62
# gapopen 10.0
# gapextend 0.5
# aformat3 pair
# sproteint
# sprotein2
# Align format: pair
# Report_file: stdout
BEA aE aE a ana a
Aligned sequences: 2
1: 1MDYA
2:
[email protected]
Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend penalty: 0.5
#
# Length: 59
Perea Fey)
eee Gs 33/59 (5
# Gaps
# Score:
79.0
7 TTNADRRKAATMRERRRLSKVNEAFETLK-RS)
