Stereochemistry and Asymmetric Synthesis
Stereochemistry and Asymmetric Synthesis
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Wichtig!
• Prüfung Stereochemistry
02. Februar 2016
8:00 – 10:00
Willstätter-HS
• Nachholklausur Stereochemistry
5. April 2016
9:00 – 11:00
Willstätter-HS
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Problem set part I
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Problem set part II
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Problem set part III
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Recommended Literature
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Recent advances of asymmetric catalysis
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Asymmetric Hydrogenation of Heterocyclic Compounds
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R. Kuwano, N. Kameyama, R. Ikeda, J. Am. Chem. Soc. 2011, 133, 7312-7315.
Camphor-Derived Organocatalytic Synthesis of Chromanones
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Z.-Q. Rong, Y. Li, G.-Q. Yang, S.-L. You, Synlett 2011, 1033-1037.
Stereochemical principles - introduction and definitions
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Classification of stereoisomers
Configuration isomers:
Conformation isomers:
The energy barrier has to be over 25 kcal/mol in order to speak of configurational isomers.
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Introduction: classification of stereoisomers
- Conformation isomers:
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Introduction: classification of stereoisomers
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Properties of enantiomers
Two enantiomers have identical physical properties but show the opposite rotation
of polarized light in a polarimeter.
95% of all drugs are chiral, therefore the enantioselective synthesis of organic molecules is of key importance.
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Chiral molecules not centered at carbon
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Nomenclature of stereoisomers
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Nomenclature of stereoisomers
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Nomenclature of stereoisomers
Ascending Order of Priority of Some Common Groups, According to the Sequency Rules
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Nomenclature of stereoisomers
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Prochirality: homotopicity, enantiotopicity, diastereotopicity
Relevance of symmetry:
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Pseudo-asymmetric and chirotopic centers
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Molecules with a chirotopic center or a chirotopic center
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Symmetry and stereochemistry
Symmetric operations:
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Symmetry and stereochemistry
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Symmetry and stereochemistry
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Symmetry and stereochemistry
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Symmetry and stereochemistry
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Heterotopic groups and faces
(Prochirality)
The reactivity of homotopic groups is the same towards all reagents. It is not possible to make a chemical
distinction between homotopic groups.
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Homotopic groups and faces
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Homotopic faces of a molecule
Homotopic faces: two faces are homotopic, if the plane defined by the two faces contains a
C2 axis.
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Enantiotopic groups and faces
Definition: The two groups in a molecule are enantiotopic, if they can be converted into one another by a
Sn-or σh-operation.
Substitution test: The substitution of one group of two enantiotopic groups gives two
enantiomeric compounds.
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Enantiotopic groups and faces
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Diastereotopic groups and faces
Diastereomeric groups can be transformed into one another only by the identity symmetry operation.
Substitution test:
provides two diastereoisomers.
Homotopic no differenciation
Cn C2
groups and faces possible
differenciation by chiral
Enantiotopic
groups and faces σh or Sn σh reagents (or
catalysts)
Racemization: Processes which convert a pure enantiomer into a 1:1 mixture of enantiomers
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Racemization
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Racemization
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Epimerization of diastereoisomers
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Selective inversion of the configuration at Csp3-centers
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Inversion of alcohols: Mitsunobu reaction
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SNi-reaction
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Substitution with retention of configuration
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Methods for Racemate Resolution
Separation of enantiomers
1) Separation based on the crystal shape. Pasteur (1845): crystal picking. Triage
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Resolution via separation of diastereomers
(±)-acids can be separated using chiral bases such as alkaloids: quinine, brucine, morphine.
J. F. Larrow, E. N. Jacobsen, Y. Gao, Y. Hong, X. Nie, C. M. Zepp, J. Org. Chem. 1994, 59, 1939. 45
Resolution of 3-methyl-2-phenylbutanoic acid
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Separation of enantiomers
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Extension to the resolution of alcohols
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Resolution of ketones by the formation of diastereoisomers
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Improved resolution procedure: the method of Wynberg
T. Vries, H. Wynberg, E. van Echten, J. Koek, W. ten Hoeve, R. M. Kellogg, Q. B. Broxterman, A. Minnaard,
B. Kaptein, S. van der Sluis, L. Hulshof, J. Kooistra Angew. Chem. 1998, 110, 2491; Angew. Chem. Int. Ed.
1998, 37, 2349.
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Resolution with in situ racemization
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Separation using a chiral chromatographic columns
polysaccharides (α-Cyclodextrin)
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Enzymatic resolution: an example of kinetic resolution
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Kinetic resolution
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Dependence of enantiomeric excess on relative rate of reaction
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V. S. Martin, S. S. Woodard, T. Katsuki, Y. Yamada, M. Ikeda, K. B. Sharpless, J. Am. Chem. Soc. 1981, 103, 6237.
Kinetic resolution
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Examples of kinetic resolution
M. Kimura, I. Kasahara, K. Manabe, R. Noyori, H. Takaya, J. Org. Chem. 1988, 53, 708.
Determination of ee% by NMR Methods: review article D. Parker Chem. Rev. 1991, 91, 1441
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Determination of the absolute configuration
Classical X-ray analysis does not allow to distinguish between two enantiomeric structures.
The method of Bijvoet (1951) uses heavy metal salts and allows the determination
of the absolute configuration of molecules.
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Chemical correlation (1)
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Chemical correlation (2)
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Determination of the relative stereochemistry by NMR methods
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Determination of the relative stereochemistry by NMR methods
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Determination of the configuration of the anomeric center of sugar
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Conformational analysis
1950: Barton shows the difference between axial and equatorial positions in cyclohexane derivatives
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Conformational analysis
50 1.0 0.0
55 1.22 0.12
60 1.50 0.24
70 2.33 0.50
75 3.0 0.65
85 5.67 1.03
90 9.0 1.30
95 19.0 1.75
99 99.0 2.72
99.9 999.0 4.09
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Conformational analysis
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Conformational analysis of butane
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Conformational analysis
Heteroatom
Alkanes Barrier (kcal/mol) Barrier (kcal/mol)
compounds
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1,3-Diaxial strain
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A. Bienvenue, J. Am. Chem. Soc. 1973, 95, 7345
1,3-Diaxial strain
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Conformational analysis of cyclic systems: Bayer strain
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Classification of cyclic organic molecules
small rings 3 9
4 6.8
5 1.4
normal rings 6 0.2
7 1.1
8 1.4
9 1.6
medium-sized rings 10 1. transannular interaction
11 1.3
12 0.5
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large rings behave like a per-chain systems
The cyclopropane ring
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Synthesis of cyclopropanes
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Synthesis of cyclopropanes
H.-C. Militzer, S. Schömenauer, C. Otte, C. Puls, J. Hain, S. Bräse, A. de Meijere, Synthesis 1993, 998.
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The cyclobutane and cyclopentane systems
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The conformations of cyclohexane
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Energy diagram for ring inversion of cyclohexane
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Inversion of cyclohexane
T (°C) Half-life
25 1.3 x 10-5 s
-60 0.03 s
-120 23 min
-160 22 years !
A crystallization of the equatorial isomer at -150 °C is possible
F. R. Jensen, J. Am. Chem. Soc. 1969, 91, 3223.
60-MHz 1H-NMR spectrum for the C(1)H in chlorocyclohexane. a) axial-equatorial equilibrium at -115 °C,
b) axial enriched mixture at -150 °C, c) pure equatorial conformer at -150 °C
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Cyclohexyl iodide
100 MHz 1H-NMR spectrum of iodocyclohexane at -80 °C. Only the low field C(1)H signal is shown.
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Temperature depending NMR-spectra / exchange rate of protons
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Conformational free energies (-DG) for some substituents
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F. Johnson, Chem. Rev. 1968, 68, 375
S. Seel, T. Thaler, K. Takatsu, C. Zhang, H. Zipse, B. F. Straub, P. Mayer, P. Knochel, J. Am. Chem. Soc., 2011, 133, 4774.
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Stereoselective effects: Curtin-Hammett principle
According to the Curtin-Hammett principle, the position of the equilibrium between two molecules
A and B cannot be used to predict the ratio between the products PA and PB, only the difference
between the activation energies DGB* - DGA* is relevant 90
The Curtin-Hammett principle
Stereoselective E2-elimination
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Example of the Curtin-Hammett principle
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The Curtin-Hammett principle
According to the Curtin-Hammett principle, the position of the equilibrium between two molecules A and B
cannot be used to predict the ratio between the products.
Most probable origin: hyperconjugation effect between electron lone pair of oxygen and the s* (C-X) bond
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The anomeric effect
H. Paulsen, P. Luger, F. P. Heiker, Anomeric Effect: Origin and Consequences, ACS Symposium
Series No. 87, ACS, 1975, Chap. 5 96
The anomeric effect
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The anomeric effect
The anomeric effect allows to predict the preferred conformation of organic molecules:
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The kinetic anomeric effect
Kinetic effects:
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Effects on spectra and structure
Antiperiplanar lone pairs weaken C-H bonds and reduce their IR wavenumber
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Stereoelectronic effects and the Baldwin rules
Stereochemical requirements for the SN2-substitution: linear arrangement between the leading group
and the entering nucleophile
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Epoxide-opening
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Baldwin rules
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Stereoselective reactions
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SN2‘-substitutions
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SN2‘-substitutions with organocopper
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Anti-SN2‘-substitutions with organocopper
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Anti-substitutions at propargylic systems
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Stereoselective palladium-catalyzed allylic substitutions
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Electrophilic substitutions
SE2
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First synthesis of an optically active zinc reagent
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Preparation of chiral zinc reagents
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Stereoselective rearrangements
Only the bond in anti-arrangement to the leading group undregoes the migration
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Diastereoselective reactions
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The aldol reaction: the acidity of various C-H bonds
pKDMSO
MeCH2-NO2 16.7
PhCOCH3 24.7
EtCOCH2Me 27.1
PhSO2CH3 29.0
(Me3Si)2NH 30.0
CH3CN 31.0
i-Pr2NH 35.0
PhCH3 43.0
CH4 56.0
Bordwell acidity scala in DMSO: Acc. Chem. Res. 1988, 21, 456.
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The aldol reaction
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The aldol reaction
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Stereoselectivity in the aldol reaction
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Enantioselective aldol synthesis
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The aldol reaction
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The aldol reaction
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The aldol reaction
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Enantioselective aldol reaction
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Enantioselective aldol reaction via Ti-enolates
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Enantioselective enolate synthesis
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Enantioselective enolate synthesis
Organocatalysis
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The aldol reaction via ester enolates – the Ireland-Claisen reaction
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The aldol reaction via ester enolates – the Ireland-Claisen reaction
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The aldol reaction via ester enolates – the Ireland-Claisen reaction
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Alternative synthesis of aldol products
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Asymmetric catalysis – Asymmetric oxidations
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Kinetic resolution of secondary alcohols
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Matched and mismatched cases
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Mechanism of Ti-catalyzed Sharpless epoxidation
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Ring opening with cuprates
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Desymmetrization of meso-epoxides
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Desymmetrization of meso-epoxides
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Asymmetric dihydroxylation
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Asymmetric dihydroxylation leading to (2S)-propanolol
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Asymmetric aminohydroxylation
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Epoxidation of non-functionalized epoxides
73 >95 R, R
81 88 R, R
61 93 2S, 3R
73 92 R, R
69 91 R, R 144
Epoxidation of non-functionalized epoxides
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Ligands for asymmetric hydrogenation
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Catalytic hydrogenation of enamides
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Ru-catalyzed hydrogenations
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Rh-catalyzed hydrogenations
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Asymmetric hydrogenation of carbonyl compounds
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The oxazaborolidine catalyst system
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The oxazaborolidine catalyst system
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CBS-Reduction
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CBS-Reduction
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Asymmetric transfer hydrogenation
Meerwein-Ponndorf-Verley reaction
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Enantioselective imine hydrogenation
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Asymmetric Diels-Alder reaction
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Asymmetric Diels-Alder reaction
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Hetero Diels-Alder reaction
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Hetero Diels-Alder reaction
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Asymmetric synthesis in Natural Product Chemistry
Prof. E. J. Corey
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Corey‘s rethrosynthetic analysis of aspidophytine
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Corey‘s rethrosynthetic analysis of aspidophytine
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Corey‘s total synthesis of aspidophytine
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Corey‘s total synthesis of aspidophytine
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Corey‘s total synthesis of aspidophytine
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Corey‘s total synthesis of aspidophytine
The final cascade sequence
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Corey‘s total synthesis of aspidophytine
Final stages and completion
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A domino olefin metathesis strategy for the synthesis of (-)halosalin
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Conjugated addition-alkylation route to prostaglandins
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Conjugated addition-alkylation route to prostaglandins
Synthesis of fragment A
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Conjugated addition-alkylation route to prostaglandins
Alternative synthesis of fragment A starting from diethyl (S,S)-tartrate
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Conjugated addition-alkylation route to prostaglandins
Synthesis of fragment B
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Conjugated addition-alkylation route to prostaglandins
Synthesis of fragment C
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Conjugated addition-alkylation route to prostaglandins
Final assembly of the PGE1
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Additional asymmetric syntheses
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Enantioselective alkylation by chiral phase-transfer catalysis
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Enantioselective fluorination reactions
H
N R R
CHCl O AcO O Cl
N N O
H H TiL 2
N Cl O
2 BHF 4 O OMe O Cl
F H H R R
OMe
1: Selectfluor N
4: R = 1-Naph
N 3 L2 = (CH3CN)2
2 O
OTMS
1/2 F
Bn Bn
CH3CN
99 %; 89 % ee
-20 °C
CN F CN
1/3
p-Tol CO2Me p-Tol CO2Me
CH2Cl2, -60 °C 80 %; 87 % ee
O O 1 (116 mol%) O O
Et OChPh2 Et OCHPh2
4 (5 mol%) Me F
Me CH3CN, rt 81 % ee
20 min
95 %, 98 %ee 1: R,R-Me-DuPhos
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Chiral monophosphines for the enantioselective hydrogenation of functionalized
olefins
O
P R R = t-Bu, Et, NMe2, (R)-O-CH(Me)Ph
O
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Asymmetric reduction of C=O bonds
H O Cl
O
R N P* N*
Ru
Ru H Ru H P* N*
*L
*L Cl
difficult easy
chiral Ru-complex
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Noyori-catalyst system
RuCl2 + P2 + N2
ligand ligand
P2
ligand
OMe
N2
ligand
Ph NH2
MeO
NH2 (R)-DAIPEN (R,R)-DPEN
Ph NH2
NH2
NH2
(R,R)-cyclohexanediamine
NH2
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Asymmetric reduction of ketones
O OH
R Ru-complex R
+ H2
KOtBu, iPrOH
(1 - 10 atm) 26 - 30 °C
> 97 %, 99 %ee
O Ru-complex OH
+ H2
Ph K2CO3, iPrOH Ph
(80 atm) 30 °C
100 %, 97 %ee
ketone : Ru : K2CO3 = 100 000 : 1 : 10 000
Ru-complex: RuCl2-(S)-XylBINAP-(S)-DAIPEN
OH OH
OH OH OH
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Asymmetric transfer hydrogenation
Tos OH
N O 1 (0.5 mol%)
RuCp*(Cl) Ph
Ph KOtBu (0.6 mol%)
N iPrOH, rt, 12 h 85 %, 96 %ee
H2
1
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Asymmetric reduction of C=N-bonds
1. NH2OH, NaOAc Ac
O MeOH, rt, 8h NH
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Catalytic asymmetric reductive amination
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Asymmetric C-C-bond formation
O O
Et2Zn
O
SO2
N O Ph
N HN c-Hex
H N N PPh2 P N
PPh2 O Ph
Cl OH Me
Me t-Bu O
Cl
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Catalytic enantioselective synthesis of prostaglandin E1 methyl ester
O O SiMe2Ph PhMe2Si
1) Cu(OTf)2 (3 mol%) HO Pent
H
HO H
O O +
Zn CO2Me
CO2Me
Ph H
Ph Ph 2 O O
O
P N : Cat*1 ca. 40 %; 94 % ee
O Ph
(6 mol%) Ph
Ph
Et2Zn
Et
Ph Br
CuBr.Me2S (1 mol%) Ph
diglyme
54 %; 77 % ee
-40 °C, 18 h
Cat*1: 2 mol%
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Hayashi-Michael-addition
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Rh-catalyzed asymmetric conjugate addition of organoboronic acids to
nitroalkenes
Ph Ph
NO2 NO2 1) NaOMe, MeOH O
PhB(OH)2
Ph
1) O
CO2Me
N
H
PhCH2NMe3+ OH-
dioxane / H2O
98 %ee
2) H2; Ni/Ra
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Zinc(II) mediated enantioselective synthesis of propargylic alcohols
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Lanthanide trifluoromethanesulfonate - catalyzed asymmetric aldol
reaction
in water
Ce(OTf)3 cat. OH O
O OSiMe3
Ph Ph
Ph H Ph
N
H
O O
86 %de; 82 %ee
O O
N
cat.
H2O - EtOH (1 : 9)
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Asymmetric aldol reaction via a dinuclear zinc catalyst
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Catalytic synthesis of 1,2-diols mediated by (L)–proline
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Enantioselective cross-aldol reaction of aldehydes
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Catalytic asymmetric Mannich reaction mediated by (L)-proline
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Organocatalytic Diels - Alder reaction
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Organocatalytic alkylation of methyl 4-oxobutenoate
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