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Usefull Qsub Commands

The document summarizes common PBS commands used to submit, monitor, and manage jobs on a PBS queue system. The qstat command is used to query the job queue and list job information. The qsub command submits jobs to the queue and qdel deletes jobs. Options for qstat include -a to list all jobs, -f for full job details, and -q or -Q to view queue information.

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0% found this document useful (0 votes)
83 views2 pages

Usefull Qsub Commands

The document summarizes common PBS commands used to submit, monitor, and manage jobs on a PBS queue system. The qstat command is used to query the job queue and list job information. The qsub command submits jobs to the queue and qdel deletes jobs. Options for qstat include -a to list all jobs, -f for full job details, and -q or -Q to view queue information.

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Mohammed
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Some frequently used PBS commands:

=============================================================================
command description
=============================================================================
qstat list information about queues and jobs
qstat -q list all queues on system
qstat -Q list queue limits for all queues
qstat -a list all jobs on system
qstat -au userid list all jobs owned by user userid
qstat -s list all jobs with status comments
qstat -r list all running jobs
qstat -f jobid list all information known about specified job
qstat -Qf queue list all information known about specified queue
qstat -B List summary information about the PBS server
qsub submit a batch job to PBS
qsub jobscript submit jobscript to PBS
qsub -I submit an interactive-batch job
qsub -q queue submit job directly to specified queue
qdel <job_id> Delete the job
=====================================================================================

qsub -

Submits a job script. Useful options include -I for an interactive job. qsub with a filename will read the
job script from a file. Without a file name it will read the job script from the command line. A job can be
specified in a single command line.

=====================================================================================

qstat

Queries the current job queue and lists its contents. Useful options include -a which lists all jobs and -f
which gives a full listing of queued jobs. With -f the listing includes information on why a job is not
currently running. The meaning of the output from qstat is described on the qstat man page.

qstat -f <jobid>

Displays more information about a particular job (also see man qstat)

qstat -q

To list all the PBS queues on Discover.

qstat -Qf <Name of the Queue , e.g general>

To get details of the particular queue.

=====================================================================================

qdel <jobid>
This command will stop a running or queued pbs job identified by jobid. The parameter jobid is the
identifier listed in qstat and returned by qsub.

pbsnodes -a

This command will list all the nodes that PBS can send jobs to and their attributes. Attributes are
arbitrary keys listed in the properites field.

=====================================================================================

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