PROVED
This has been solved in the affirmative.
Let $k\geq 1$ and $H_k(n)$ be the maximal $r$ such that if $A\subset\mathbb{N}$ has $\lvert A\rvert=n$ and $\| 1_A\ast 1_A\|_\infty \leq k$ then $A$ contains a Sidon set of size at least $r$.
Is it true that $H_k(n)/n^{1/2}\to \infty$? Or even $H_k(n) > n^{1/2+c}$ for some constant $c>0$?
Erdős
[Er84d] proved that\[H_k(n) \ll n^{2/3}\](where the implied constant is absolute). The lower bound $H_k(n)\gg n^{1/2}$ follows from the fact that any set of size $n$ contains a Sidon set of size $\gg n^{1/2}$ (see
[530]).
The answer is yes, and in fact\[H_k(n) \gg_k n^{2/3},\]proved by Alon and Erdős
[AlEr85]. We sketch their proof as follows: take a random subset $A'\subset A$, including each $n\in A'$ with probability $\asymp n^{-1/3}$. The number of non-trivial additive quadruples in $A$ is $\ll n^2$ and hence only $\ll n^{2/3}$ non-trivial additive quadruples remain in $A'$. Since the size of the random subset is $\gg n^{2/3}$, all of the remaining non-trivial additive quadruples can be removed by removing at most $\lvert A'\rvert/2$ (choosing the constants suitably).
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Additional thanks to: Noga Alon
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