Chlorophyll

Photosystem II reaction centers evolve 02 in the dark when H 202 is added as a substrate. Although some of this activity can be attributed to catalase, as much as 75% of the activity was not affected by the addition of 1 mM KCN. Several lines of evidence demonstrate that this KCN-insensitive 02 evolution from H 202 in the dark is catalyzed by the cycling of S states in the oxygen-evolving complex including: (1) inactivation of H2Oz-mediated 02 evolution by Ca/EDTA washing; (2) susceptibility of the activity to inhibition by amines like ammonia and Tris; (3) inhibition by CCCP which is known to accelerate the rate of deactivation of the S 2 state and; (4) a direct dependence of the rate of 02 evolution on the presence of calcium and (5) chloride.

The cofactor composition and electron-transfer kinetics of the reaction center (RC) from a magnesium chelatase (bchD) mutant of Rhodobacter sphaeroides were characterized. In this RC, the special pair (P) and accessory (B) bacteriochlorophyll (BChl)-binding sites contain Zn-BChl rather than BChl a. Spectroscopic measurements reveal that Zn-BChl also occupies the H sites that are normally occupied by bacteriopheophytin in wild type, and at least 1 of these Zn-BChl molecules is involved in electron transfer in intact Zn-RCs with an efficiency of >95% of the wild-type RC. The absorption spectrum of this Zn-containing RC in the near-infrared region associated with P and B is shifted from 865 to 855 nm and from 802 to 794 nm respectively, compared with wild type. The bands of P and B in the visible region are centered at 600 nm, similar to those of wild type, whereas the H-cofactors have a band at 560 nm, which is a spectral signature of monomeric Zn-BChl in organic solvent. The Zn-BChl H-cofactor spectral differences compared with the P and B positions in the visible region are proposed to be due to a difference in the 5th ligand coordinating the Zn. We suggest that this coordination is a key feature of protein-cofactor interactions, which significantly contributes to the redox midpoint potential of H and the formation of the charge-separated state, and provides a unifying explanation for the properties of the primary acceptor in photosystems I (PS1) and II (PS2). magnesium chelatase mutant ͉ photosynthetic bacterial reaction center ͉ photosystems I and II ͉ protein-cofactor interaction

The biochemical basis of heat/drought tolerance was investigated by comparing the response of antisense and sense transgenic soybean plants (containing the L-D 1pyrroline-5-carboxylate reductase gene) with non-transgenic wild-type plants. The plants were subjected to a simultaneous drought and heat stress of 2 days, whereafter they were rewatered at 251C. During this time the sense plants only showed mild symptoms of stress compared to the antisense plants which were severely stressed. Upon stress, nicotinamide adenine dinucleotide phosphate (NADP þ) levels decreased in antisense while it increased in sense plants. Recovery with respect to NADP þ levels was best in sense plants. Sense plants had the highest ability to accumulate proline

Leaf senescence is a developmentally and environmentally regulated process which includes global changes in gene expression. Using Arabidopsis as a model, we modified Chl arrangement in photosystems by overexpressing the catalytic domain (the C domain) of chlorophyllide a oxygenase (CAO) fused with the linker domain (the B domain) of CAO and green fluorescent protein (GFP). In these plants (referred to as the BCG plants for the B and C domains of CAO and GFP), the Chl a/b ratio was drastically decreased and Chl b was incorporated into core antenna complexes. The BCG plants exhibited a significant delay of both developmental and dark-induced leaf senescence. The photosynthetic apparatus, CO 2 fixation enzymes and the chloroplast structure were lost in wild-type plants during senescence, while BCG plants retained them longer than the wild type. Large-scale quantitative real-time PCR analyses of 1,880 transcription factor (TF) genes showed that 241 TFs are differentially expressed between BCG plants and wild-type plants at senescence, $40% of which are known senescence-associated genes (SAGs). Expression profiling also revealed the down-regulation of a large number of additional non-TF SAGs. In contrast, genes involved in photosynthesis were up-regulated, while those encoding Chl degradation enzymes were down-regulated in BCG plants. These results demonstrate that alteration of pigment composition in the photosynthetic apparatus retards senescence through transcriptional reprogramming.

The phytoplankton community in three small (0.065-0.249 km 2) reservoirs in the stepped plateau landscape in the Kinangop area above the Rift Valley floor in Kenya were studied between 1998 and 2000. Approximately 70 species of phytoplankton were identified. The community was dominated by chlorophytes, cyanobacteria and chrysophytes. Diatoms were rare. The phytoplankton assemblage was frequently dominated by cyanobacteria in the dry season. The phytoplankton assemblage transformed to a mixture of cyanobacteria, chlorophytes and chrysophytes at the onset of the long rains, and mixture of cyanobacteria and chlorophytes after the long rains. Thereafter the phytoplankton assemblage consisted mainly of a mix of cyanobacteria and chrysophytes until the onset of the short rains when cyanobacterial dominance re-emerged. The most common phytoplankton species included Microcystis spp., Botryococcus braunii, Ceratium hirundinella, Anabaena spp. and Euglena viridis. The dry season cyanobacterial blooms produced cyanotoxins that included microcystin and endotoxins. The concentrations were well above the recommended safe limits for drinking water. The patterns of cyanotoxin production showed that the growth of the toxin-producing cyanobacteria was regulated by water temperature, pH and nutrients. The appearance of cyanotoxins in the small reservoirs is a serious public health issue in rural Kenya because such reservoirs are key sources of water for humans, livestock and wildlife.

Cyanobacteria represent less a investigated group of prokaryote, in terms of their plant growth promoting potential, especially in relation to the production of phytohormones. The present investigation was aimed towards analyzing growth kinetics, indole acetic acid (IAA) production and acetylene reduction activity (ARA) as an index of nitrogen fixation in two selected cyanobacterial strains belonging to the genus Anabaena, as influenced by tryptophan supplementation and light:dark conditions. Interesting observations were recorded in terms of enhancement of IAA production accompanied by protein and chlorophyll accumulation in the two cyanobacterial strains grown in media without tryptophan and incubated under light:dark or continuous light conditions. Colorimetric and chromatographic analyses supported the observations that tryptophan is not essential as a precursor for IAA biosynthesis in these cyanobacteria. Further study is in progress to identify genes involved in the tryptophan independent pathway for IAA biosynthesis. K e y w o r d s: chlorophyll, cyanobacteria, IAA, nitrogen fixation, plant growth, tryptophan

Chromatiurn chromatophores contain bacteriochlorophyll (BChl) in three forms which have absorption maxima around 800, 850, and 890 mp. Treatment with 3 z Triton X-100 produces two fragments which can be separated by sucrose densitygradient centrifugation. The lighter fraction contains both the 800-and 850-mp forms of BChl as well as the usual complement of carotenoids, but is photochemically inactive. The 850-mp BChl component is very sensitive to photooxidative destruction and is lost upon further treatment with the detergent. The heavier fraction contains the 890-mp BChl component with small amounts of the 850-and 800-mp forms. This heavy fraction contains cytochromes of the c type, catalyzes the aerobic photooxidation of tetramethyl-

Fusarium circinatum is the causal agent of pitch canker disease affecting Pinus spp. and Pseudotsuga menziesii worldwide. Under strict quarantine measures, alternative approaches for disease control are necessary. Phosphite (Phi) salts are known for their fungicidal activity and as plant resistance elicitors; however, its potential is yet to be acknowledged in the Pinus-F. circinatum model. The main aim of this study was to assess whether the application of a Phi-based commercial formulation would delay the progression of the pitch canker on Pinus radiata plants, and on the in vitro fungal growth. In vitro assays were performed using different Phi concentrations (1% and 4%) and a non-treated control (0%), and repeated in vivo using inoculated and non-inoculated plants. Plant physiological parameters and hormonal content were evaluated. Phi was effective at inhibiting in vitro mycelial growth in a dose dependent manner. Regardless of fungal inoculation, Phi application induced positi...

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Researchers studying plant growth under different lamp types often attribute differences in growth to a blue light response. Lettuce plants were grown in six blue light treatments comprising five blue light fractions (0, 2, 6% from high-pressure sodium [HPS] lamps and 6, 12, 26% from metal halide [MH] lamps). Lettuce chlorophyll concentration, dry mass, leaf area and specific leaf area under the HPS and MH 6% blue were significantly different, suggesting wavelengths other than blue and red affected plant growth. Results were reproducible in two replicate studies at each of two photosynthetic photon fluxes, 200 and 500 mol m Ϫ2 s Ϫ1 . We graphed the data against absolute blue light, phytochrome photoequilibrium, phototropic blue, UV, red:far red, blue:red, blue: far red and 'yellow' light fraction. Only the 'yellow' wavelength range (580-600 nm) explained the differences between the two lamp types.

Quantification of Cry 1Ac protein in two field-grown Bt (Bacillus thuringiensis) cotton hybrids (MECH-184, RCH-2) was performed in relation to tissue maturity. Leaves of upper, middle and lower canopies and in bolls and bracts attached to the plant were chosen. Similar measurements were also made in fully mature tagged leaves attached to plants in the upper canopy and excised leaf discs. The leaf discs were incubated in the dark following the ELISA method with commercially available kits. Cry 1Ac levels declined with tissue maturity and senescence in both attached and excised plant parts of the Bt cotton hybrids examined. With advancing maturity in leaves attached to the plants till 21 days, steady increase in the levels of chlorophyll and decrease in the amounts of total protein were observed. Moreover, with increasing maturity, the concentration of reducing sugars rise in contrast to decline in total soluble amino acids. On the other hand, in case of the excised leaf discs, while total soluble amino acids exhibited an increasing trend, chlorophyll, total protein and reducing sugar contents decreased gradually.

Photosystem I and Photosystem II activities, as well as polypeptide content of chlorophyll (Chl)-protein complexes were analyzed in mesophyll (M) and bundle sheath (BS) chloroplasts of maize (Zea mays L.) growing under moderate and very low irradiance. This paper discusses the application of two techniques: mechanical and enzymatic, for separation of M and BS chloroplasts. The enzymatic isolation method resulted in depletion of polypeptides of oxygen evolving complex (OEC) and aCF1 subunit of coupling factor; D1 and D2 polypeptides of PSII were reduced by 50%, whereas light harvesting complex of photosystem II (LHCII) proteins were still detectable. Loss of PSII polypeptides correlated with the decreasing of Chl fluorescence measured at room temperature. Using mechanical isolation of chloroplasts from BS cells, all tested polypeptides could be detected. We found a total lack of O 2 evolution in BS chloroplasts, but dichlorophenolindophenol (DCPIP) was photoreduced. PSI activity of chloroplasts isolated from 14-and 28-day-old plants was similar in BS chloroplasts in moderate light (ML), but in low light (LL) it was reduced by about 20%. PSI and PSII activities in M chloroplasts of plants growing in ML decreased with aging of plants. In older LL-grown plants, activities of both photosystems were higher than those observed in chloroplasts from ML-grown plants.

The time dependence of photobleaching of photosynthetic pigments under high light illumination of isolated spinach thylakoid membranes at 22 and 4 8C was investigated. At 22 8C, the bleaching at 678, 472 and 436 nm was prominent but lowering the temperature up to 4 8C during illumination prevented the pigments from bleaching almost completely. The accelerating effect on pigment photobleaching by the presence of 3-(3,4 dichlorophenyl)-1,1dimethyl-urea)-(DCMU), a well-known inhibitor of the electron transport and known to prevent photosystem I (PSI) and photosystem II (PSII) against photoinhibitory damage, was also suppressed at low temperature. At 22 8C in the presence and absence of DCMU, the decrease of the absorption at 678 and 472 nm was accompanied by a shift to the shorter wavelengths. To check the involvement of reactive oxygen species in the process, pigment photobleaching was followed in anaerobiosis. The effects of the three different environmental factors-light, temperature and DCMU-on the dynamics of photobleaching are discussed in terms of different susceptibility of the main pigment-protein complexes to photoinhibition. ᮊ

The effects of Mn nutrition of tomato (Lycopersicon esculentum Mill.) seedlings on Mn-, Fe-and CuZn-superoxide dismutase (SOD, EC 1.15.1.1) enzymatic activities, metal translocation, chlorophyll concentration, and plant growth were tested using a bioassay system consisting of chelator-buffered nutrient culture with Mn 2 + activities set to pMn (-log activity of Mn 2 + ) of 6.6, 7.6, 8.6, and 9.6. The two middle levels resulted in optimal plant growth, whereas the two extreme levels resulted in a gradual decrease in chlorophyll concentration and slower plant growth. At the end of the experiment, 26 days after transfer to the Mn treatments, significant differences in shoot Mn concentration were manifested, from 10.5 mg kg -1 in plants grown in pMn 9.6 to 207.4 mg kg -1 in plants grown in pMn 6.6. Other element concentrations in the leaf suggest that growth inhibition and chlorophyll synthesis were affected primarily by manganese deficiency and excess. Twenty days after transfer of plants to the Mn treatments Mn-, Fe-and CuZn-SOD activities were assayed in young expanded leaf tissues by electrophoresis running gel. Whereas chloroplastic CuZn-SOD activity did not differ among Mn treatments, the cytosolic CuZn-SOD and mitochondrial Mn-SOD activities increased in both Mn-excess and Mn-deficient plants. Key words: Lycopersicon esculentum Mill. -manganese -metal-buffered nutrient culture -plant nutrition -superoxide dismutase (SOD) -tomato Abbreviations: EDTA = Ethylenediaminetetraacetic acid. -pM = -log free metal ion activity (pM). -SOD = superoxide dismutase

The south-American cordgrass, Spartina densiflora, has become the dominant plant species on recent tidal marsh restorations in the Doñ ana National Park (SW Spain). We examined the effect of different doses of glyphosate (720-7200 g a.i. ha À1 ) and imazamox (20-68 g a.i. ha À1 ) on growth and photosynthetic apparatus of S. densiflora. Imazamox had no effect on neither on growth nor photosynthetic apparatus of S. densiflora. On the contrary, glyphosate inhibited photochemical efficiency of photosynthesis from day one. Net photosynthetic rate, stomatal conductance and photosynthetic pigments and the number of new tillers were reduced. Glyphosate at high doses (ca. 7200 g a.i. ha À1 ) could be an appropriate method of control, since it has a negative effect over the photosynthetic apparatus and growth of S. densiflora. Furthermore, glyphosate and its main metabolite, AMPA, were not extracted from the soil, since they were retained by the very high iron and aluminum oxide content of this soil.

The objective of this study was to provide baseline information on the e4ects of a golf course complex on water quality, colonized periphyton, and seagrass meadows in adjacent freshwater, near-coastal, and wetland areas. The chemical and biological impacts of the recreational facility, which uses reclaimed municipal wastewater for irrigation, were limited usually to near-5eld areas and decreased seaward during the 2-year study. Concentrations of chromium, copper, and organochlorine pesticides were below detection in surface water, whereas mercury, lead, arsenic, and atrazine commonly occurred at all locations. Only mercury and lead exceeded water quality criteria. Concentrations of nutrients and chlorophyll a were greater in fairway ponds and some adjacent coastal areas relative to reference locations and Florida estuaries. Periphyton ash free dry weight and pigment concentrations statistically di4ered but not between reference and nonreference coastal areas. Biomass of Thalassia testudinum (turtle grass) was approximately 43% less in a meadow located adjacent to the golf complex (P(0.05). The results of the study suggest that the e4ects of coastal golf courses on water quality may be primarily localized and limited to peripheral near-coastal areas. However, this preliminary conclusion needs additional supporting data. 2002 Elsevier Science (USA)

This study aims to study the distribution of contaminants in rivers that flow into the Caribbean Sea using chlorophyll-a (Chl-a) and suspended sediment (SS) as markers and ALOS AVNIR-2 satellite sensor data. The Haina River (HN) and Ozama and Isabela Rivers (OZ-IS) that flow through the city of Santo Domingo, the capital of the Dominican Republic, were chosen. First, in situ spectral reflectance/Chl-a and SS datasets obtained from these rivers were acquired in March 2011 (case A: with no rain influence) and June 2011 (case B: with rain influence), and the estimation algorithm of Chl-a and SS using AVNIR-2 data was developed from the datasets. Moreover, the developed algorithm was applied to AVNIR-2 data in November 2010 for case A and August 2010 for case B. Results revealed that for Chl-a and SS estimations under cases A and B conditions, the reflectance ratio of AVNIR-2 band 4 and band 3 (AV4/AV3) and the reflectance of AVNIR-2 band 4 (AV4) were effective. The Chl-a and SS mapping...

Our planet shows striking gradients in the species richness of plants and animals, from high biodiversity in the tropics to low biodiversity in polar and high-mountain regions. Recently, similar patterns have been described for some groups of microorganisms, but the large-scale biogeographical distribution of freshwater phytoplankton diversity is still largely unknown. We examined the species diversity of freshwater phytoplankton sampled from 540 lakes and reservoirs distributed across the continental United States and found strong latitudinal, longitudinal, and altitudinal gradients in phytoplankton biodiversity, demonstrating that microorganisms can show substantial geographic variation in biodiversity. Detailed analysis using structural equation models indicated that these large-scale biodiversity gradients in freshwater phytoplankton diversity were mainly driven by local environmental factors, although there were residual direct effects of latitude, longitude, and altitude as well. Specifically, we found that phytoplankton species richness was an increasing saturating function of lake chlorophyll a concentration, increased with lake surface area and possibly increased with water temperature, resembling effects of productivity, habitat area, and temperature on diversity patterns commonly observed for macroorganisms. In turn, these local environmental factors varied along latitudinal, longitudinal, and altitudinal gradients. These results imply that changes in land use or climate that affect these local environmental factors are likely to have major impacts on large-scale biodiversity patterns of freshwater phytoplankton.

The South China Sea (SCS) is one of the western marginal oceans of the Pacific Ocean, surrounded by South China, the Indo Peninsula of China, Peninsular Malaysia, the Philippines, and Borneo Island. The effect of the ENSO on the Variability of SST and chlorophyll-a has been investigated by many researchers. However, in the study, there were not still a small number of researchers who studied in this SCS area using high-resolution satellite imagery data. Chlorophyll-a and SST data taken from MODIS data, and wind analysis data from CCMP (Cross Calibrate Multi-Platform). The results obtained, wind speed affects over changes SST and Chlorophyll-a at SCS. The influence of wind speed against the variability of SST is very strong, but otherwise, over variability of Chlorophyll-a is less impact. There is a high correlation between ENSO (El Nino) with the SST which tends to be dominant throughout the west season due to the influence of wind speed in the South China Sea from the Pacific towards Australia throughout the west season. However, this is in contrast to the correlation between ENSO and Chlorophyll-a which appears less dominant, which is suspected of other factors that may affect Chlorophyll-a anomalies in addition to wind and SST factors.

An alternative approach to quantification of the contribution of non-Q B -reducing centers to Chl a fluorescence induction curve is proposed. The experimental protocol consists of a far-red pre-illumination followed by a strong red pulse to determine the fluorescence rise kinetics. The far-red pre-illumination induces an increase in the initial fluorescence level (F 25 ls ) that saturates at low light intensities indicating that no light intensity-dependent accumulation of Q À A occurs. Far-red light-dose response curves for the F 25 ls -increase give no indication of superimposed period-4 oscillations. F 25 ls -dark-adaptation kinetics following a far-red pre-pulse, reveal two components: a faster one with a half-time of a few seconds and a slower component with a half-time of around 100 s. The faster phase is due to the non-Q B -reducing centers that re-open by recombination between Q À A and the S-states on the donor side. The slower phase is due to the recombination between Q À B and the donor side in active PS II reaction centers. The pre-illuminationinduced increase of the F 25 ls -level represents about 4-5% of the variable fluorescence for pea leaves ($2.5% equilibrium effect and 1.8-3.0% non-Q B -reducing centers). For the other plant species tested these values were very similar. The implications of these values will be discussed.

The Arabidopsis GATA transcription factor family has 30 members, the biological function of most of which is poorly understood. Homozygous T-DNA insertion lines for 23 of the 30 members were identified and analyzed. Genetic screening of the insertion lines in defined growth conditions revealed one line with an altered phenotype, while the other lines showed no obvious change. This line, SALK_001778, has a T-DNA insertion in the second exon of At5g56860 which prevents the expression of the GATA domain. Genetic analysis of the mutant demonstrated that the phenotypic change is caused by a single gene effect and is recessive to the wildtype allele. In wild-type plants, the expression of At5g56860 is shoot-specific, occurs at an early stage of development and is inducible by nitrate. Loss of expression of At5g56860 in the loss-of-function mutant plants resulted in reduced chlorophyll levels. A transcript profiling experiment revealed that a considerable proportion of genes downregulated in the loss-of-function mutants are involved in carbon metabolism and At5g56860 is thus designated GNC (GATA, nitrate-inducible, carbon metabolism-involved). gnc mutants with no GNC expression are more sensitive to exogenous glucose, and two hexose transporter genes, with a possible connection to glucose signaling, are significantly downregulated, while GNC over-expressing transgenic plants upregulate their expression and are less sensitive to exogenous glucose. These observations suggest a function for GNC in regulating carbon and nitrogen metabolism.

Ferulic acid (FA) is one of phenolics found in most higher plants. It is important to quantify the internal FA level in vegetables and fruits, since it was epidemiologically demonstrated and a number of study supported that consumption of fruits and vegetables rich in phenolic acids including FA is associated with the prevention of chronic diseases such as cancer and cardiovascular disease. In order to allow handling of the intact fresh produces, non-invasive methods are desired. Previously, 355 nm ultraviolet (UV) laser-induced fluorescence spectrum revealed that living plants contain fluorophore corresponding to blue-green fluorescence (shown to be FA). However, quantification of FA based on fluorescence in UVexcited leaves can be hardly achieved since FA fluorescence measured at fixed excitation and emission can be applied only to the limited range of FA concentration. Here, we report a model experiment for fluorometric quantification of FA in solution in vitro which may provide a series of useful information required for estimation of FA concentrations in vivo fluid inside the vegetables. Based on deconvolution of intrinsic fluorescence spectra, we observed that FA fluorescence signals can be deciphered to determine the concentration of FA. By viewing that the recorded FA fluorescence (h) is reflecting the primitive function (f) corresponding to FA concentrations and kernel function (g) determining the spike position in the spectra. Thus, f should be obtained as f h g 1. In practice, cumulative curves of fluorescence signals at fixed emission wavelength (460 nm) along with the changes in excitation wavelength (200 400 nm) were plotted and the midpoints (along the scale of excitation wavelength) in the resultant curves corresponding to different FA concentration were graphically determined. FA's concentration-specific changes in fluorescence profiles must be due to the fact that FA possesses multiple fluorophores within the molecule despite its simple structure. Lastly, simplified protocol for determination of FA concentration using dual UV excitation wavelengths was proposed. In this assay, ratio of 460 nm fluorescence intensities induced by two distinct excitation wavelengths (short, 260 nm; long, 330 380 nm) were shown to be highly correlated with FA concentration ranged from M to mM orders.

Plants dissipate excess excitation energy as heat by nonphotochemical quenching (NPQ). NPQ has been thought to resemble in vitro aggregation quenching of the major antenna complex, light harvesting complex of photosystem II (LHC-II). Both processes are widely believed to involve a conformational change that creates a quenching centre of two neighbouring pigments within the complex. Using recombinant LHC-II lacking the pigments implicated in quenching, we show that they have no particular role. Single crystals of LHC-II emit strong, orientationdependent fluorescence with an emission maximum at 680 nm. The average lifetime of the main 680 nm crystal emission at 100 K is 1.31 ns, but only 0.39 ns for LHC-II aggregates under identical conditions. The strong emission and comparatively long fluorescence lifetimes of single LHC-II crystals indicate that the complex is unquenched, and that therefore the crystal structure shows the active, energy-transmitting state of LHC-II. We conclude that quenching of excitation energy in the lightharvesting antenna is due to the molecular interaction with external pigments in vitro or other pigment-protein complexes such as PsbS in vivo, and does not require a conformational change within the complex.

• Hydrogen peroxide (H2O2) is reported to inhibit biotrophic but benefit necrotrophic pathogens. Infection by necrotrophs can result in a massive accumulation of H2O2 in hosts. Little is known of how pathogens with both growth types are affected (hemibiotrophs). The hemibiotroph, Septoria tritici, infecting wheat (Triticum aestivum) is inhibited by H2O2 during the biotrophic phase, but a large H2O2 accumulation occurs in the host during reproduction.• Here, we infiltrated catalase, H2O2 or water into wheat during the biotrophic or the necrotrophic phase of S. tritici and studied the effect of infection on host physiology to get an understanding of the survival strategy of the pathogen.• H2O2 removal by catalase at both early and late stages made plants more susceptible, whereas H2O2 made them more resistant. H2O2 is harmful to S. tritici throughout its life cycle, but it can be tolerated.• The late accumulation of H2O2 is unlikely to result from down-regulation of photosynthesis, but probably originates from damage to the peroxisomes during the general tissue collapse, which is accompanied by release of soluble sugars in a susceptible cultivar.Hydrogen peroxide (H2O2) is reported to inhibit biotrophic but benefit necrotrophic pathogens. Infection by necrotrophs can result in a massive accumulation of H2O2 in hosts. Little is known of how pathogens with both growth types are affected (hemibiotrophs). The hemibiotroph, Septoria tritici, infecting wheat (Triticum aestivum) is inhibited by H2O2 during the biotrophic phase, but a large H2O2 accumulation occurs in the host during reproduction.Here, we infiltrated catalase, H2O2 or water into wheat during the biotrophic or the necrotrophic phase of S. tritici and studied the effect of infection on host physiology to get an understanding of the survival strategy of the pathogen.H2O2 removal by catalase at both early and late stages made plants more susceptible, whereas H2O2 made them more resistant. H2O2 is harmful to S. tritici throughout its life cycle, but it can be tolerated.The late accumulation of H2O2 is unlikely to result from down-regulation of photosynthesis, but probably originates from damage to the peroxisomes during the general tissue collapse, which is accompanied by release of soluble sugars in a susceptible cultivar.

Using chlorophyll (Chl) a fluorescence many aspects of the photosynthetic apparatus can be studied, both in vitro and, noninvasively, in vivo. Complementary techniques can help to interpret changes in the Chl a fluorescence kinetics. Kalaji et al. (Photosynth Res 122:121-158, 2014a) addressed several questions about instruments, methods and applications based on Chl a fluorescence. Here, additional Chl a fluorescence-related topics are discussed again in a question and answer format. Examples are the effect of connectivity on photochemical quenching, the correction of F V /F M values for PSI fluorescence, the energy partitioning concept, the interpretation of the complementary area, probing the donor side of PSII, the assignment of bands of 77 K fluorescence emission spectra to fluorescence emitters, the relationship between prompt and delayed fluorescence, potential problems when sampling tree canopies, the use of fluorescence parameters in QTL studies, the use of Chl a fluorescence in biosensor Hazem M. Kalaji and Gert Schansker have contributed equally to this paper.

We investigated and compared the impact of organic loads due to the biodeposition of mussel and fish farms on the water column of a coastal area of the Tyrrhenian Sea (Western Mediterranean). Physico-chemical data (including oxygen, nutrients, DOC and particulate organic matter), microbial variables (picoplankton and picophytoplankton density and biomass) and phytoplankton biomass (as chlorophyll-a) were determined on a monthly basis from March 1997 to February 1998. The results of this study indicate that both fish farm and mussel culture did not alter significantly dissolved inorganic phosphorus and chlorophyll-a values, while inorganic nitrogen concentrations were higher in mussel farm area. However, waters overlying the fish farm presented significantly higher DOC concentrations. In contrast, no significant differences were observed comparing particulate matter concentrations. The increased DOC concentrations determined a response of the heterotrophic fraction of picoplankton, while picophytoplankton, likewise phytoplankton, did not display differences among fish or mussel farms and control site. From the analysis of the different microbial components, it is possible to conclude that the impact of fish farms is evident only for the heterotrophic components. The comparative analysis of the mussel biodeposition and fish-farm impact revealed that mussel farms induced a considerably lower disturbance, apparently limited to an increased density and biomass of microbial assemblages beneath the mussel cultures. r

Seasonal fluctuations of plant biomass and photosynthesis are key features of the Earth system because they drive variability of atmospheric CO 2 , water and nutrient cycling, and food supply to consumers. There is no inventory of phytoplankton seasonal cycles in nearshore coastal ecosystems where forcings from ocean, land and atmosphere intersect. We compiled time series of phytoplankton biomass (chlorophyll a) from 114 estuaries, lagoons, inland seas, bays and shallow coastal waters around the world, and searched for seasonal patterns as common timing and amplitude of monthly variability. The data revealed a broad continuum of seasonal patterns, with large variability across and within ecosystems. This contrasts with annual cycles of terrestrial and oceanic primary producers for which seasonal fluctuations are recurrent and synchronous over large geographic regions. This finding bears on two fundamental ecological questions: (1) how do estuarine and coastal consumers adapt to an irregular and unpredictable food supply, and (2) how can we extract signals of climate change from phytoplankton observations in coastal ecosystems where local-scale processes can mask responses to changing climate?

This paper addresses the detection and monitoring of the development of epilithic phototrophic biofilms on the granite fac¸ade of an institutional building in Santiago de Compostela (NW Spain), and reports a case study of preventive conservation. The results provide a basis for establishing criteria for the early detection of phototrophic colonization (greening) and for monitoring its development on granite buildings by the use of color changes recorded with a portable spectrophotometer and represented in the CIELAB color space. The results show that parameter b* (associated with changes of yellowness-blueness) provides the earliest indication of colonization and varies most over time, so that it is most important in determining the total color change. The limit of perception of the greening on a granite surface was also established in a psycho-physical experiment, as Db*: þ0.59 CIELAB units that correspond, in the present study, to 6.3 mg of biomass dry weight cm 72 and (8.43 + 0.24) 6 10 73 mg of extracted chlorophyll a cm 72 .

Anthocyanins are a group of secondary metabolites of flavonoids which can be found in parts of the plant, usually on the leaves or brachtea. Anthocyanins have antioxidant activity, anti-mutagenic, protect liver function, and anti-hypertensive. The amount of anthocyanins in the leaves of plants or brachtea usually inversely proportional to the amount of chlorophyll. In Euphorbia pulcherrima, the number of anthocyanins and chlorophyll formed is influenced by the photoperiod or irradiation. In this experiment, the testing will be done on the content of anthocyanins and chlorophyll in the leaves and brachtea of Euphorbia pulcherrima, which has been given the treatment of the duration of irradiation. Fifteen of Euphorbia pulcherrima are divided into three treatment groups. P0 is the control group who were given radiation 10 hours and 14 hours of dark, P1 with 24hour dark conditions, and P2 were irradiated 24 hours. After treated for 14 days, leaves and brachtea of Euphorbia pulcherrima are extracted and calculated to get the amount of anthocyanins and chlorophyll. From the results of this experiment, it can be concluded that the duration of the irradiation has effect on the amount of anthocyanins and chlorophyll in the leaves and bractea of Euphorbia pulcherrima. In long exposure time, the number of chlorophyll will increase and anthocyanins amount will decrease, and vice versa.

Vibrio parahaemolyticus and Vibrio vulnificus, which are native to estuaries globally, are agents of seafood-borne or wound infections, both potentially fatal. Like all vibrios autochthonous to coastal regions, their abundance varies with changes in environmental parameters. Sea surface temperature (SST), sea surface height (SSH), and chlorophyll have been shown to be predictors of zooplankton and thus factors linked to vibrio populations. The contribution of salinity, conductivity, turbidity, and dissolved organic carbon to the incidence and distribution of Vibrio spp. has also been reported. Here, a multicoastal, 21-month study was conducted to determine relationships between environmental parameters and V. parahaemolyticus and V. vulnificus populations in water, oysters, and sediment in three coastal areas of the United States. Because ecologically unique sites were included in the study, it was possible to analyze individual parameters over wide ranges. Molecular methods were used to detect genes for thermolabile hemolysin (tlh), thermostable direct hemolysin (tdh), and tdh-related hemolysin (trh) as indicators of V. parahaemolyticus and the hemolysin gene vvhA for V. vulnificus. SST and suspended particulate matter were found to be strong predictors of total and potentially pathogenic V. parahaemolyticus and V. vulnificus. Other predictors included chlorophyll a, salinity, and dissolved organic carbon. For the ecologically unique sites included in the study, SST was confirmed as an effective predictor of annual variation in vibrio abundance, with other parameters explaining a portion of the variation not attributable to SST.

Contributing roughly half of the biosphere's net primary production (NPP) 1,2 , photosynthesis by oceanic phytoplankton is a vital link in the cycling of carbon between living and inorganic stocks. Each day, more than a hundred million tons of carbon in the form of CO 2 are fixed into organic material by these ubiquitous, microscopic plants of the upper ocean, and each day a similar amount of organic carbon is transferred into marine ecosystems by sinking and grazing. The distribution of phytoplankton biomass and NPP is defined by the availability of light and nutrients (nitrogen, phosphate, iron). These growth-limiting factors are in turn regulated by physical processes of ocean circulation, mixed-layer dynamics, upwelling, atmospheric dust deposition, and the solar cycle. Satellite measurements of ocean colour provide a means of quantifying ocean productivity on a global scale and linking its variability to environmental factors. Here we describe global ocean NPP changes detected from space over the past decade. The period is dominated by an initial increase in NPP of 1,930 teragrams of carbon a year (Tg C yr 21 ), followed by a prolonged decrease averaging 190 Tg C yr 21 . These trends are driven by changes occurring in the expansive stratified low-latitude oceans and are tightly coupled to coincident climate variability. This link between the physical environment and ocean biology functions through changes in upper-ocean temperature and stratification, which influence the availability of nutrients for phytoplankton growth. The observed reductions in ocean productivity during the recent post-1999 warming period provide insight on how future climate change can alter marine food webs.

Use of phosphate-solubilizing bacteria (PSB) as inoculants has concurrently increased phosphorous uptake in plants and improved yields in several crop species. The ability of PSB to improve growth of aerobic rice (Oryza sativa L.) through enhanced phosphorus (P) uptake from Christmas island rock phosphate (RP) was studied in glasshouse experiments. Two isolated PSB strains; Bacillus spp. PSB9 and PSB16, were evaluated with RP treatments at 0, 30 and 60 kg ha -1 . Surface sterilized seeds of aerobic rice were planted in plastic pots containing 3 kg soil and the effect of treatments incorporated at planting were observed over 60 days of growth. The isolated PSB strains (PSB9 and PSB16) solubilized significantly high amounts of P (20.05-24.08 mg kg -1 ) compared to non-inoculated (19-23.10 mg kg -1 ) treatments. Significantly higher P solubilization (24.08 mg kg -1 ) and plant P uptake (5.31 mg plant -1 ) was observed with the PSB16 strain at the highest P level of 60 kg ha -1 . The higher amounts of soluble P in the soil solution increased P uptake in plants and resulted in higher plant biomass (21.48 g plant -1 ). PSB strains also increased plant height (80 cm) and improved root morphology in aerobic rice. The results showed that inoculation of aerobic rice with PSB improved phosphate solubilizing activity of incorporated RP.