Academia.edu no longer supports Internet Explorer.
To browse Academia.edu and the wider internet faster and more securely, please take a few seconds to upgrade your browser.
2016, Angewandte Chemie International Edition
Contrary to the simple expectations from Coulombs law, Weinhold proposed that anions can stabilize each other as metastable dimers, yet experimental evidence for these species and their mutual stabilization is missing. We show that two bisulfate anions can form such dimers, which stabilize each other with self-complementary hydrogen bonds, by encapsulation inside a pair of cyanostar macrocycles. The resulting 2:2 complex of the bisulfate homodimer persists across all states of matter, including in solution. The bisulfate dimers OH•••O hydrogen bonding is seen in a 1 H NMR peak at 13.75 ppm, which is consistent with borderline-strong hydrogen bonds. The fundamental role of Coulombs law [1] is so ingrained in all areas of chemistry, biology, and physics that it is the starting point for formulating hypotheses on the behavior of matter. It governs the bonding in ionic solids, the salt-bridges that guide protein structure and function, and the movement of ions in electric fields. We rely daily upon the notion that like charges repel (Figure 1 a) and opposite charges attract (Figure 1 b). For this reason, it came as some surprise when Weinholds recent theoretical work [2] and its commentary [3] suggested that anions can attract, instead of repel, each other to form dimers. [4] Propositions that anions can stabilize each other are rare and the only unequivocal evidence for this phenomenon is in the solid state. [5] We found over 80 examples of HSO 4 À dimers (see the Supporting Information, Table S1), [6] as well as chains of HSO 4 À , [7] water-bridged sulfates, [8] and oligomers [9] and cyclic forms of hydrogen-bonded phosphates. [10] However, many forces other than anti-electrostatic hydrogen bonding, [2] for example, ionic bonding, can stabilize such anion dimers in crystals. In solution, where solvation overtakes ionic bonding, dimer salts do not appear to survive. Supramolecular encapsulation offers a way to stabilize unstable species in solution. [11] The only reports of complexes of anion dimers are with H 2 PO 4 À and are based on the observation of a 2:1 ratio of phosphate and receptor. Nevertheless, there are no direct observations of anion dimers in solution. With good reason, the authors of those works, Reinhoudt, [5a, 12] Kubo, [13] Fabbrizzi, [5b, 14] Sessler, [15] and Tomisič, [16] took care to circum
ChemPhysChem, 2012
CrystEngComm, 2002
R eceived 7th M a rch 2002, A ccep ted 2n d M ay 2 0 0 2 P ublished on the Web 18th July 2 0 0 2 Many of the C",[TCNE]" (C = cation) salts have intradimer CC interactions in the range of 2.9 to 3.5 A and show the electronic fingerprints associated with CC bond formation (IR and UV spectra, magnetic properties, structural changes), despite the fact that two [TCNE]'-anions should repel each other due to purely Coulombic considerations. Herein, we analyze these pairwise interactions in detail for a particular crystal in which such a CC bond is found, to understand when and why these bonds are formed in a general case. 12 0 .3 i2). C i2) C i l) C i4) 119.9i2)% C i4) C i l) C i2) C i6) 169.0i2)\ C i3) C i l) C i2) C i5) 1 6 4 .6 !2)r. 1 D O
International Journal of Mass Spectrometry, 2001
Ion-pair formation via proton transfer from an acidic hydrogen of one functional group to a basic functional group plays an important role in the structure and reactivity of biomolecules in the gas phase. The relative stabilities of the ion-pair and the neutral-pair forms of five dimers composed of a basic molecule and a trifluoroacetic acid molecule were compared using density-functional calculations. The proton affinity of the basic molecules investigated ranged from 246 to 254 kcal/mol. The gas phase acidity of trifluoroacetic acid is 323.8 kcal/mol. The results of the B3LYP (6Ϫ311ϩϩG**) calculations indicate that the structures of the dimers change from a neutral pair to an ion pair as the proton affinity of the bases increases. This result is consistent with previous blackbody infrared radiative dissociation experiments on protonated trimolecular complexes (or trimers) consisting of two basic molecules and trifluoroacetic acid, which indicates that the predominant structure of the trimer changes from a charge-solvation structure to a salt bridge structure with the increasing gas phase basicity of the base. The electrostatic character of the interaction between the basic molecule and the trifluoroacetic acid molecule was determined using the natural energy-decomposition analysis (NEDA) program. In the ion pair, a majority (69%-77%) of the attractive energy of the dimer is comprised of the electrostatic component. Two models are derived that include the acidity of the acidic molecule, the proton affinity of the basic molecule, and an electrostatic binding term for both the ion pair and the neutral pair. Several nonelectrostatic interaction terms can be replaced by a single correction or constant term so that both models, one using NEDA electrostatic terms and the other using integration of point-charge interactions, provide reasonably accurate results. This indicates that electrostatic models similar to the ones used here may be useful in studying salt bridge formation in larger molecules.
A theoretical study of anionic complexes formed by two partly deprotonated oxoacids joined by hydrogen bonds has been carried out at the MP2 computational level. In spite of the ionic repulsion, local energy minima are found both in the gas phase and in aqueous solution. Electrostatic potential and electron density topologies, and the comparison with neutral complexes formed by oxoacids, reveal that the ionization has no significant effect on the properties of the hydrogen bonds. The stability of the complexes in the gas phase is explained by attractive forces localized in a volume situated in the hydrogen bond and defined as the electrostatic attraction region (EAR) and determined by the topological analyses of the electron density and the electrostatic potential, and by the electric field lines. In solution, the strong anionic repulsion is mostly screened by the effect of the surrounding polar solvent, which only leads to a weak destabilizing interaction in the hydrogen bond region and finally favors the overall stability of the complexes. The anion−anion complexes have been compared with the corresponding neutral ones (as salts or protonated forms), showing that EAR remains unchanged along the series. Figure 3. Dissociation path of the protic complexes (H n AO m ) 2 in the gas phase. E b and d c are defined as in Figure 2.
Journal of the American Society for Mass Spectrometry, 2010
Chemical Physics Letters, 2013
The effect of the environment on the stability of the (H 3 PO 4) 2 , ðH 2 PO À 4 Þ 2 and ðHPO 2À 4 Þ 2 hydrogen bonded dimers has been explored by the topological analyses of the theoretical electron density and the electrostatic potential. The environment has little effect on the hydrogen-bonding interaction, while it induces a significant one on the Coulombic component of the dimer. The interaction energy is represented in terms of hydrogen-bond and non-hydrogen-bond contributions, being only the latter affected by the charge or the environment. While the non-hydrogen bond contribution dominates the interaction energy in the gas phase, it becomes balanced in a polarizable environment.
Angewandte Chemie International Edition, 2009
Chemical Physics, 2012
Organic & Biomolecular Chemistry, 2003
The affinities of ferrocene (2) and the cobaltocenium cation (3 ؉ ), which have roughly the same size and differ in their charge, towards the inner cavity of the dimeric capsule formed by tetraurea calix[4]arene (1) were studied in C 2 D 4 Cl 2 solutions. While 3 ؉ , which occupies more than 75% of the internal volume of the dimer, is readily encapsulated this is not the case for 2. This is probably due to cation-π interactions, which operate only between 3 ؉ and the aromatic rings of the calix[4]arene dimer. We found that the affinity of the cobaltocenium cation is higher than that of the tropylium cation (4 ؉ ) and is only 2-3 times less than that of the tetraethylammoniun cation (5 ؉ ). From the variable temperature 1 H NMR spectra of this capsule, the free energy of activation at 298 K (∆G ‡ 298K ) for the reorientation of the hydrogen bonded belt between the two parts of the dimer could be determined by total line shape analysis for the aromatic protons of the calixarene. The value of 14.3 ± 0.2 kcal mol Ϫ1 for the dimeric capsules of 3 ؉ PF 6
Journal of Proteome Research, 2006
Receptor heteromerization is an important phenomenon that results from the interaction of epitopes on two receptors. Previous studies have suggested the possibility of Dopamine D 2 -NMDA receptors' interaction. We believe that the interaction is through an acidic epitope of the NMDA NR 1 subunit (KVNSEEEEEDA) and a basic epitope of the D 2 third intracellular loop (VLRRRRRKRVN), which was shown to also interact with the Adenosine A 2 A receptor. In previous work we highlighted the role of certain amino acid residues, mainly two or more adjacent arginine on one peptide and two or more adjacent glutamate, or aspartate, or a phosphorylated residue on the other in the formation of noncovalent complexes (NCX) between epitopes. In the present work, we use the phosphorylated (KVNSpEEEEEDA), non-phosphorylated (KVNSEEEEEDA) and modified (KVNpSAAAAAAA) forms of the NMDA epitope that possibly interact with the D 2 epitope to investigate the gas-phase stability of the NCXs as a function of the nominal energy given to the NCX ion as it enters the collision cell. In addition to theoretical calculations, the experimental data was used to calculate the stability of each electrostatic complex versus that of the dimer of KVNSpEEEEEDA. Our results demonstrate the importance of the phosphate group in stabilizing molecular interactions and that appreciably higher collision energies are required to completely dissociate any of the three different NCX ions that are formed through electrostatic interaction in comparison to the energy required to dissociate the KVNpSEEEEEDA dimer ion, which is mainly kept together by hydrogen bonding. This study emphasizes ionic bonds stability and their importance to protein structure as their potent electrostatic attractions can in the gas phase surpass the strength of covalent bonds.
Molecules
We explore quantum chemical calculations for studying clusters of hydroxyl-functionalized cations kinetically stabilized by hydrogen bonding despite strongly repulsive electrostatic forces. In a comprehensive study, we calculate clusters of ammonium, piperidinium, pyrrolidinium, imidazolium, pyridinium, and imidazolium cations, which are prominent constituents of ionic liquids. All cations are decorated with hydroxy-alkyl chains allowing H-bond formation between ions of like charge. The cluster topologies comprise linear and cyclic clusters up to the size of hexamers. The ring structures exhibit cooperative hydrogen bonds opposing the repulsive Coulomb forces and leading to kinetic stability of the clusters. We discuss the importance of hydrogen bonding and dispersion forces for the stability of the differently sized clusters. We find the largest clusters when hydrogen bonding is maximized in cyclic topologies and dispersion interaction is properly taken into account. The kinetic st...
Journal of the American Chemical Society, 2020
Supramolecular capsules are desirable containers for the study of molecular behavior in small spaces and offer applications in transport, catalysis, and material science. We report here the use of chalcogen bonding to form container assemblies that are stable in water. Cavitands 1−3 functionalized with 2,1,3-benzoselenadiazole walls were synthesized in good yield from resorcin[4]arenes. The solid-state single-crystal X-ray structure of 3 showed a dimeric assembly cemented together through multiple Se•••N chalcogen bonds. Binding of hydrophobic and amphiphilic guests in D 2 O was investigated by 1 H NMR methods and revealed host−guest assemblies of 1:1, 2:1, and 2:2 stoichiometries. Small guests such as n-hexane or cyclohexane assembled as 2:2 capsular complexes, larger guests like cyclohexane carboxylic acid or cyclodecane formed 1:1 cavitand complexes, and longer linear guests like ndodecane, cyclohexane carboxylic acid anhydride, and amides created 2:1 capsular complexes. The 2:1 complex of the capsule with cyclohexane carboxylic acid anhydride was stable over 2 weeks, showing that the seam of chalcogen bonds is "waterproof". Selective uptake of cyclohexane over benzene and methyl cyclohexane over toluene was observed in aqueous solution with the capsule. Hydrophobic forces and hydrogen-bonding attractions between guest molecules such as 3-methylbutanoic acid stabilized the assemblies in the presence of the competing effects of water. The high polarizability and modest electronegativity of Se provide a capsule lining complementary to guest C−H bonds. The 2,1,3benzoselenadiazole walls impart an unusually high magnetic anisotropy to the capsule environment, which is supported by density functional theory calculations.
Angewandte Chemie International Edition, 2010
and Shohei Shimosugi, Shinshu University, for preliminary examinations on charge-by-charge assemblies, Prof. Tomonori Hanasaki and Shunichi Murayama, Ritsumeikan University, for DSC measurements, SPring-8 (JASRI) for synchrotron radiation experiments at BL40B2 (No. 2009A1985, 2009B1593, 2010A1504, and 2010A1621), and Prof. Hitoshi Tamiaki, Ritsumeikan University, for various measurements. Y.H. thanks JSPS for a Research Fellowship for Young Scientists.
ChemPhysChem, 2013
Chemistry - A European Journal, 2014
CF 3 H as a proton donor was paired with a variety of anions, and its properties were assessed by MP2/aug-cc-pVDZ calculations. The binding energy of monoanions halide, NO 3 À , formate, acetate, HSO 4 À , and H 2 PO 4 À lie in the 12-17 kcal mol À1 range, although F À is more strongly bound, by 26 kcal mol À1. Dianions SO 4 2À and HPO 4 2À are bound by 27 kcal mol À1 , and trianion PO 4 3À by 45 kcal mol À1. When two O atoms are available on the anion, the CH•••O À H-bond (HB) is usually bifurcated, although asymmetrically. The CH bond is elongated and its stretching frequency redshifted in these ionic HBs, but the shift is reduced in the bifurcated structures. Slightly more than half of the binding energy is attributed to Coulombic attraction, with smaller contributions from induction and dispersion. The amount of charge transfer from the anions to the s*(CH) orbital correlates with many of the other indicators of bond strength, such as binding energy, CH bond stretch, CH redshift, downfield NMR spectroscopic chemical shift of the bridging proton, and density at bond critical points.
Chemical Science, 2021
A robust, dimeric capsule forms quantitatively in low-polarity solvents via a seam of 8 hydrogen bonds. The resulting electron-rich cavity selectively binds small organic cations over neutral counterparts.
CrystEngComm, 2002
R eceived 7th M a rch 2002, A ccep ted 2n d M ay 2 0 0 2 P ublished on the Web 18th July 2 0 0 2 Many of the C",[TCNE]" (C = cation) salts have intradimer CC interactions in the range of 2.9 to 3.5 A and show the electronic fingerprints associated with CC bond formation (IR and UV spectra, magnetic properties, structural changes), despite the fact that two [TCNE]'-anions should repel each other due to purely Coulombic considerations. Herein, we analyze these pairwise interactions in detail for a particular crystal in which such a CC bond is found, to understand when and why these bonds are formed in a general case. 12 0 .3 i2). C i2) C i l) C i4) 119.9i2)% C i4) C i l) C i2) C i6) 169.0i2)\ C i3) C i l) C i2) C i5) 1 6 4 .6 !2)r. 1 D O
International Journal of Quantum Chemistry, 2010
Chemphyschem : a European journal of chemical physics and physical chemistry, 2018
Quantum chemical calculations have been employed to study kinetically stable cationic clusters, wherein the monovalent cations are trapped by hydrogen bonding despite strongly repulsive electrostatic forces. We calculated linear and cyclic clusters of the hydroxy-functionalized cation N-(3-hydroxypropyl) pyridinium, commonly used as cation in ionic liquids. The largest kinetically stable cluster was a cyclic hexamer that very much resembles the structural motifs of molecular clusters, as known for water and alcohols. Surprisingly, strong cooperative hydrogen bonds overcome electrostatic repulsion and result in cationic clusters with a high net charge up to Q=+6e. The structural, spectroscopic, and electronic signatures of the cationic and related molecular clusters of 3-phenyl-1-propanol could be correlated to NBO parameters, supporting the existence of "anti-electrostatic" hydrogen bonds (AEHB), as recently suggested by Weinhold. We also showed that dispersion forces enha...
Chemistry: A European Journal, 2003
Bond paths linking two bonded hydrogen atoms that bear identical or similar charges are found between the ortho-hydrogen atoms in planar biphenyl, between the hydrogen atoms bonded to the C1 ± C4 carbon atoms in phenanthrene and other angular polybenzenoids, and between the methyl hydrogen atoms in the cyclobutadiene, tetrahedrane and indacene molecules corseted with tertiary-tetra-butyl groups. It is shown that each such H ± H interaction, rather than denoting the presence of ™nonbonded steric repulsions∫, makes a stabilizing contribution of up to 10 kcal mol À1 to the energy of the molecule in which it occurs. The quantum Keywords: bond path ¥ density functional calculations ¥ hydrogen bonds ¥ hydrogen ± hydrogen interaction [a] Prof. R.
Loading Preview
Sorry, preview is currently unavailable. You can download the paper by clicking the button above.