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2006, Comptes Rendus Chimie
The extraction of coupling constant values from NMR spectra is an important step in assigning the configuration of organic molecules. A method for the automatic multiplet analysis in weakly coupled spin systems is described here. It relies on a multi-step procedure that forms the AUJ (AUtomatic J) algorithm. Tolerance to low-magnitude second-order effects is achieved by an efficient multiplet centering and symmetrization step. Time-domain signal analysis through a linear model produces a raw evaluation of coupling constants and their associated multiplicities. The final result is obtained through numerical optimization of the multiplet parameters. Two examples are presented, one from an experimental spectrum, and the other one, of higher complexity, from a computer-simulated multiplet. To cite this article: É.
The Journal of organic chemistry, 2002
A systematic procedure to decipher first-order 1 H NMR multiplets is described. This method is a very practical tool for extracting coupling constant values. It requires only that one (a) learn to identify each of the 2 n (n ) number of spin 1 / 2 nuclei to which the proton is coupled) "units of intensity" of a multiplet and (b) then apply a clearly delineated sequence of iterative steps that allows the J's to be assigned in order (from smallest to largest). The approach is even easier to use than one described previously (J. Org. Chem. 1994, 59, 4096-4103).
Magnetic Resonance in Chemistry, 2005
H NMR scalar coupling constants are a rich source of information on molecular structure, but their extraction from spectra can be less than straightforward. Previous approaches to J extraction include methods proposed by Hoye, Golotvin, and the 'modified J-doubling' method. Here we describe the ACCA method, currently implemented in the NMR package MestReC, which allows a high degree of automation in the extraction of coupling patterns even in the case of complex multiplets with sublinewidth splitting. The new approach is illustrated by application to strychnine, for which it has detected previously unreported couplings.
ChemInform, 2010
| One of the significant advancements in Nuclear Magnetic Resonance spectroscopy (NMR) in combating the problem of spectral complexity for deriving the structure and conformational information is the incorporation of additional dimension and to spread the information content in a two dimensional space. This approach together with the manipulation of the dynamics of nuclear spins permitted the designing of appropriate pulse sequences leading to the evolution of diverse multidimensional NMR experiments. The desired spectral information can now be extracted in a simplified and an orchestrated manner. The indirect detection of multiple quantum (MQ) NMR frequencies is a step in this direction. The MQ technique has been extensively used in the study of molecules aligned in liquid crystalline media to reduce spectral complexity and to determine molecular geometries. Unlike in dipolar coupled systems, the size of the network of scalar coupled spins is not big in isotropic solutions and the MQ 1 H detection is not routinely employed, although there are specific examples of spin topology filtering. In this brief review, we discuss our recent studies on the development and application of multiple quantum correlation and resolved techniques for the analyses of proton NMR spectra of scalar coupled spins.
Magnetic Resonance in Chemistry, 2002
The dependence of the values of NMR spin–spin coupling constants on molecular conformation can be a valuable tool in the structure determination process. The continuing increase in the resonance frequency of modern NMR spectrometers allows an increasing number of resonances to be examined using first-order multiplet analysis. While this can easily be done for the simplest patterns (doublets, triplets, quartets), more complex patterns can be extremely difficult to analyze. The task of deducing the coupling constant values from a multiplet is the reverse process of generating a conventional splitting tree from a single line (chemical shift) by sequential branching using a given set of coupling constants. We present a simple, straightforward method of deducing coupling constant values from first-order multiplets based on a general inverted splitting tree algorithm but also including a peak intensity normalization procedure that utilizes multiplet symmetry and generates a set of possible first-order intensity distribution patterns. When combined with an inverted splitting tree algorithm, it is possible to find an intensity pattern that allows the deduction of a proper set of coupling constants.
Tetrahedron, 2003
Simulation of 2D 1 H homo-and 1 H-13 C heteronuclear NMR spectra of organic molecules are here suggested as a tool in the structure elucidation of organic compounds. DFT calculations of 1 H and 13 C chemical shifts are performed on a sample compound, the ethyl ester of the exo-2-norbornanecarbamic acid, with the mPW1PW91 method using the 6-31G(d) basis set, following a full optimization of the geometry. Homo and heteronuclear spin-spin coupling constants are also calculated, providing full prediction of the common 2D 1
This book describes the use of NMR spectroscopy for dealing with problems of small organic molecule structural elucidation. It features a significant amount of vital chemical shift and coupling information but more importantly, it presents sound principles for the selection of the techniques relevant to the solving of particular types of problem, whilst stressing the importance of extracting the maximum available information from the simple 1-D proton experiment and of using this to plan subsequent experiments.
Magnetic Resonance in Chemistry, 2013
Optimized shifting and/or scaling factors for calculating one-bond carbon-hydrogen spin-spin coupling constants have been determined for 35 combinations of representative functionals (PBE, B3LYP, B3P86, B97-2 and M06-L) and basis sets (TZVP, HIII-su3, EPR-III, aug-cc-pVTZ-J, ccJ-pVDZ, ccJ-pVTZ, ccJ-pVQZ, pcJ-2 and pcJ-3) using 68 organic molecular systems with 88 1 J CH couplings including different types of hybridized carbon atoms. Density functional theory assessment for the determination of 1 J CH coupling constants is examined, comparing the computed and experimental values. The use of shifting constants for obtaining the calculated coupling improves substantially the results, and most models become qualitatively similar. Thus, for the whole set of couplings and for all approaches excluding those using the M06 functional, the root-mean-square deviations lie between 4.7 and 16.4 Hz and are reduced to 4-6.5 Hz when shifting constants are considered. Alternatively, when a specific rovibrational contribution of 5 Hz is subtracted from the experimental values, good results are obtained with PBE, B3P86 and B97-2 functionals in combination with HIII-su3, aug-cc-pVTZ-J and pcJ-2 basis sets.
Journal of Magnetic Resonance, 1998
Possibilities and limitations of iterative lineshape fitting procedures of MAS NMR spectra of isolated homonuclear spin pairs, aiming at determination of magnitudes and orientations of the various interaction tensors, are explored. Requirements regarding experimental MAS NMR spectra as well as simulation and fitting procedures are discussed. Our examples chosen are the isolated 31 P spin pairs in solid Na 4 P 2 O 7 ⅐ 10H 2 O, (1), and Cd(NO 3 ) 2 ⅐ 2PPh 3 , (2). In both cases the two 31 P chemical shielding tensors in the molecular unit are related by C 2 symmetry, and determination of the orientations of these two tensors in the molecular frame is possible. In addition, aspects of homonuclear J coupling will be addressed. For 1, both magnitude and sign of 2 J iso ( 31 P, 31 P) (J iso ؍ ؊19.5 ؎ 2.5 Hz) are obtained; for 2, (J iso ؍ ؉139 ؎ 3 Hz) anisotropy of J with an orientation of the J-coupling tensor collinear, or nearly collinear, with the dipolar coupling tensor can be excluded, while absence or presence of anisotropy of J with any other relative orientation of the J-coupling tensor cannot be determined.
Chemical Physics Letters, 2007
The complexity of 1 H NMR spectra of solutes in partially ordered solvents such as liquid crystals increases rapidly with the number of spins. Spectra of simple solutes with sufficient symmetry and containing not too many spins (typically 66) are readily analysed. The analysis of larger spin systems is more difficult, and often impossible. In this Letter, we present the application of a general automated genetic algorithm to solving highly complex spin systems with minimal operator intervention. The robustness of the method is demonstrated for the nine-spin system p-bromo-biphenyl, a solute interconverting between two symmetry-related conformations.
Analytical chemistry, 2018
We have developed technology for producing accurate spectral fingerprints of small molecules through modeling of NMR spin system matrices to encapsulate their chemical shifts and scalar couplings. We describe here how libraries of these spin systems utilizing unique and reproducible atom numbering can be used to improve NMR-based ligand screening and metabolomics studies. We introduce new Web services that facilitate the analysis of NMR spectra of mixtures of small molecules to yield their identification and quantification. The library of parametrized compounds has been expanded to cover simulations of H NMR spectra at a variety of magnetic fields of more than 1100 compounds, included are many common metabolites and a library of drug-like molecular fragments used in ligand screening. The compound library and related Web services are freely available from http://gissmo.nmrfam.wisc.edu/ .
Organic Letters, 2004
An approach relying on quantum mechanical calculations of proton−proton and proton−carbon J coupling values is proposed as a tool for assigning the relative configuration on chiral organic compounds. The method is suitable for carbon frameworks containing several adjacent stereogenic centers and may allow significant advances in the extensive use of spin−spin couplings in structural elucidation.
Theoretical Chemistry Accounts, 2007
Work on computational NMR recently carried out at our Laboratory in Padova is reviewed. We summarize our results concerning the calculation of NMR properties (chemical shifts and spin–spin coupling constants) in a variety of contexts, from the structure elucidation of complex organic molecules or molecules containing heavy atoms to weakly interacting species, such as those involved in hydrogen bonding or van der Waals CH-π interactions. We also present some original results, viz. the calculated 1H and 13C spectra of the putative natural substance nimbosodione, the first examples of calculated 181Ta chemical shifts, spin–spin couplings in $\hbox{Hg}_{4}^{2+}$ and through-space coupling constants involving 205Tl.
Chemical Physics Letters, 2013
Zero-field nuclear magnetic resonance (NMR) spectroscopy is emerging as a new, potentially portable, and cost-effective NMR modality with the ability to provide information-rich, high-resolution spectra. We present simple rules for analysis of zero-field NMR spectra based on first-order perturbation theory and the addition of angular momenta. These rules allow for the prediction of observed spectral lines without numerical simulation. Results are presented for a few small organic molecules with characteristic spin topologies, demonstrating unambiguous assignment of peaks, highlighting the potential of zero-field NMR as a tool for chemical identification.
Arkivoc, 2004
Pattern recognition is extremely important for both structure elucidation and stereochemical studies as a means for the measurement of spin-spin coupling constants. Many treatises deal with the formation of splitting trees to create a pattern for a given set of spin-spin coupling constants. We present here a general systematic procedure to easily analyze first order multiplets in NMR spectroscopy. This method has the advantage of measuring coupling constants while deconvolving the signals at the same time using an extension of the modified J doubling in the frequency domain.
The Journal of Physical Chemistry A, 2009
Multidimensional nuclear magnetic resonance (NMR) experiments measure spin-spin correlations, which provide important information about bond connectivities and molecular structure. However, direct observation of certain kinds of correlations can be very time-consuming due to limitations in sensitivity and resolution. Covariance NMR derives correlations between spins via the calculation of a (symmetric) covariance matrix, from which a matrix-square root produces a spectrum with enhanced resolution. Recently, the covariance concept has been adopted to the reconstruction of nonsymmetric spectra from pairs of 2D spectra that have a frequency dimension in common. Since the unsymmetric covariance NMR procedure lacks the matrix-square root step, it does not suppress relay effects and thereby may generate false positive signals due to chemical shift degeneracy. A generalized covariance formalism is presented here that embeds unsymmetric covariance processing within the context of the regular covariance transform. It permits the construction of unsymmetric covariance NMR spectra subjected to arbitrary matrix functions, such as the square root, with improved spectral properties. This formalism extends the domain of covariance NMR to include the reconstruction of non-symmetric NMR spectra at resolutions or sensitivities that are superior to the ones achievable by direct measurements.
Magnetochemistry
In this work, 242 NMR spin–spin coupling constants (SSCC) in 20 molecules are calculated, either with correlated wave function methods, SOPPA and HRPA(D), or with density functional theory based on the B3LYP, BHandH, or PBE0 functionals. The calculations were carried out with and without treatment of solvation via a polarizable continuum model in both the geometry optimization step and/or the SSCC calculation, and thereby, four series of calculations were considered (the full-vacuum calculation, the full-solvent calculation, and the two cross combinations). The results were compared with experimental results measured in a solvent. With the goal of reproducing experimental values, we find that the performance of the PBE0 and BHandH SSCCs improves upon including solvation effects. On the other hand, the quality of the B3LYP SSCCs worsens with the inclusion of solvation. Solvation had almost no effect on the performance of the SOPPA and HRPA(D) calculations. We find that the PBE0-based...
Journal de Chimie Physique et de Physico-Chimie Biologique, 1998
La mesure des constantes de couplage est un probl6me gCnCral en Resonance MagnCtique NuclCaire des liquides pour lequel de nombreuses solutions ont CtC propodes. La mCthode exposCe ici fait intervenir une transformation des donnCes dans le domaine des temps qui fournit un graphe de la multiplicitC en fonction de la valeur de J. L'efficacitC de la mCthode est dCmontrCe sur le spectre de RMN 1H du mbromonitrobenzkne, qui prksente des couplages de faible valeur difficiles 2 merxirer directement. mots-clCs : RMN, constantes de couplage, analyse automatique.
Magnetic Resonance in Chemistry, 2005
New NMR pulse schemes completely driven under homonuclear and heteronuclear cross-polarization conditions are proposed for the study and the measurement of coupling constants in symmetrical molecules in solution. The appropriate superimposition of independent magnetization components can afford several spin-selective multiplet patterns that are suitable for the determination of the magnitude and the sign of proton-proton and proton-carbon coupling constants with optimum sensitivity levels. A detailed product operator formalism analysis for the proposed doubly selective 1D and nonselective 2D HCP-TOCSY versions is provided and experimental verification for the configurational analysis of symmetric olefinic systems having chemical equivalence is demonstrated.
Analytical chemistry, 2017
The exceptionally rich information content of nuclear magnetic resonance (NMR) spectra is routinely used to identify and characterize molecules and molecular interactions in a wide range of applications, including clinical biomarker discovery, drug discovery, environmental chemistry, and metabolomics. The set of peak positions and intensities from a reference NMR spectrum generally serves as the identifying signature for a compound. Reference spectra normally are collected under specific conditions of pH, temperature, and magnetic field strength, because changes in conditions can distort the identifying signatures of compounds. A spin system matrix that parameterizes chemical shifts and coupling constants among spins, provides a much richer feature set for a compound than a spectral signature based on peak positions and intensities. Spin system matrices expand the applicability of NMR spectral libraries beyond the specific conditions under which data were collected. In addition to b...
Journal of Magnetic Resonance, 1998
An existing algorithm, founded on the works of Stephenson and There is a basic difference between the traditional CB-B Binsch, for the automatic analysis of isotropic or simple anisoapproach and automatic analysis programs since, in the fortropic NMR spectra has been improved to treat very complex mer, many hours of an experienced operator's time are re-NMR spectra of molecules dissolved in nematic solvents. The main quired, whereas what is needed in the latter is (ideally) just options added to the original algorithm are a wider choice of CPU time. smoothing functions; the use of the principal component regression There is not yet an automatic procedure for anisotropic method; and the possibility of selecting molecular coordinates, spectra with performance comparable to that for isotropic order parameters, and spectral parameters as variables of the probspectra. The difference in behavior can be easily understood lem. By means of these new options, it has been possible to analyze by recalling that anisotropic spectra differ from isotropic automatically NMR spectra (even depending on 27 spectral parameters) of 16 molecules in an anisotropic environment. Details spectra in that they lack the typical cluster structure of the of each case are discussed. ᭧ 1998 Academic Press latter. As far as we know, the only programs of this kind are DANSOM (7) and DAISY (8), both implementations of DAVINS, where the spin Hamiltonian has been modified in order to deal with dipolar couplings (as a further improve-1
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