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2009, Chemistry (Weinheim an der Bergstrasse, Germany)
The efficient synthesis of novel chiral cyclic peptides cyclo[NHCHX-CH=CHCH(2)CO(NHCH(2)CH=CHCH(2)CO)(2)] designed to develop hydrogen-bonding interactions with suitable polymers is described. Complexation of a carboxylic acid derivatized cyclic peptide 2 (X = CH(2)OCOCH(2)CH(2)CO(2)H) capable of self-assembling as "endless" tubes, with poly(vinyl alcohol) (PVA) led to a vast weak-interaction network, in which the cyclopeptide developed extensive hydrogen-bonding interactions with the hydroxyl groups of PVA through not only the carboxylic acid, but also its ester carbonyl and amide groups. In aqueous solution, the peptide/PVA complexes self-assemble into long-grain ricelike aggregates compatible with the stacking of cyclic peptides through intercycle hydrogen bonds. Upon casting on silicon wafer, the anisotropic aggregates can coalesce to form filaments tens of micrometers long. The study demonstrates that complexing functionalized cyclic peptides with polymers through hyd...
Australian Journal of Chemistry, 2010
Self-assembling cyclic peptide-polymer conjugates were prepared by ‘clicking’ polymers (prepared by RAFT polymerization) to an azide functionalized d-alt-l cyclic octapeptide via the Huisgen 1,3-dipolar cycloaddition reaction. Due to the high graft density, the efficiency of the click chemistry conjugation reaction was found to be highly dependent on the size of the polymer. At relatively low molecular weights, as many as four polymer chains could be grafted to each 8 residue cyclic peptide ring. Evidence for the self assembly of the conjugates into peptide-polymer nanotubes was observed by TEM and IR.
ACS Macro Letters, 2016
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Macromolecules, 2006
The synthesis of peptide-polymer conjugates comprising (D-alt-L)-cyclopeptides as aggregator domains and their self-assembly into tubelike structures is described. By coupling two well-defined poly(n-butyl acrylate) blocks to opposite sides of a preformed cyclic (D-alt-L)-R-octapeptide, a coil-ring-coil bioconjugate was accessed. The applied solution-phase coupling route allowed a multigram scale synthesis of the conjugate and assured both a controlled synthesis and ease of analysis. The controlled self-assembly of the conjugate leads to uniform tube structures. Atomic force microscopy (AFM) of these aggregates deposited on mica revealed a height of 1.4 (0.2 nm, a width of 5 nm, and roughly estimated lengths of up to 200-300 nm. A model is proposed, explaining the structure dimensions. This includes the formation of a tubular peptide core build via stacking of the cyclopeptides and a poly(n-butyl acrylate) shell wrapping around the peptide tube. The model is consistent with infrared spectroscopy and electron diffraction measurements, verifying that the peptide segment of the conjugate adopts a-sheet structure, similar to unsubstituted (D-alt-L)-cyclopeptides. Hence, the stacks of peptide rings are stabilized along the fiber axis via interring sheet H-bonding. The tube structures are capable to interact laterally, organizing further into weak networks as was evidenced by AFM and transmission electron microscopy.
The Journal of Physical Chemistry B, 2006
The self-assembly of cyclic D,L-R-peptides into hollow nanotubes is a crucial mechanistic step in their application as antibacterial and drug-delivery agents. To understand this process, molecular dynamics (MD) simulations were performed on dimers of cyclic peptides formed from cyclo [(-L-Trp-D-N-MeLeu-) 4 -] 2 and cyclo [(-L-Trp-D-Leu-) 4 -] 2 subunits in nonpolar (nonane) and polar (water) solvent. The dimers were observed to be stable only in nonpolar solvent over the full 10 ns length of the MD trajectory. The behavior of the dimers in different solvents is rationalized in terms of the intersubunit hydrogen bonding, hydrogen bonding with the solvent, and planarity of the rings. It is shown that the and ψ dihedral angles of a single uncapped ring in nonane lie in the -sheet region of the Ramachandran plot, and the ring stays in a flat conformation. Steered MD (SMD) simulations based on Jarzynski's equality were performed to obtain the potential of mean force as a function of the distance between the two rings of the capped dimer in nonane. It is also shown that a single peptide subunit prefers to reside close to the nonane/water interface rather than in bulk solvent because of the amphiphilic character of the peptide ring. The present MD results build the foundation for using MD simulations to study the mechanism of the formation of cyclic peptide nanotubes in lipid bilayers.
Biomacromolecules, 2012
Here we ask the fundamental questions about the effect of peptide topology on self-assembly. The study revealed that the self-assembling behaviors of cyclic and linear peptides are significantly different in several respects, in addition to sharing several similarities. Their clear differences included the morphological dissimilarities of the self-assembled nanostructures and their thermal stability. The similarities include their analogous critical aggregation concentration values and cytotoxicity profiles, which are in fact closely related. We believe that understanding topology-dependent self-assembly behavior of peptides is important for developing tailor-made self-assembled peptide nanostructures.
Angewandte Chemie International Edition, 2004
Journal of the American Chemical Society, 2017
Controlling the number of monomers in a supramolecular polymer has been a great challenge in programmable self-assembly of organic molecules. One approach has been to make use of frustrated growth of the supramolecular assembly by tuning the balance of attractive and repulsive intermolecular forces. We report here on the use of covalent bond formation among monomers, compensating for intermolecular electrostatic repulsion, as a mechanism to control the length of a supramolecular nanofiber formed by self-assembly of peptide amphiphiles. Circular dichroism spectroscopy in combination with dynamic light scattering, size-exclusion chromatography, and transmittance electron microscope analyses revealed that hydrogen bonds between peptides were reinforced by covalent bond formation, enabling the fiber elongation. To examine these materials for their potential biomedical applications, cytotoxicity of nanofibers against C2C12 premyoblast cells was tested. We demonstrated that cell viability...
In this tutorial review the process and applications of peptide self-assembly into nanotubes, nanospheres, nanofibrils, nanotapes, and other ordered structures at the nano-scale are discussed. The formation of well-ordered nanostructures by a process of self-association represents the essence of modern nanotechnology. Such self-assembled structures can be formed by a variety of building blocks, both organic and inorganic. Of the organic building blocks, peptides are among the most useful ones. Peptides possess the biocompatibility and chemical diversity that are found in proteins, yet they are much more stable and robust and can be readily synthesized on a large scale. Short peptides can spontaneously associate to form nanotubes, nanospheres, nanofibrils, nanotapes, and other ordered structures at the nano-scale. Peptides can also form macroscopic assemblies such as hydrogels with nano-scale order. The application of peptide building blocks in biosensors, tissue engineering, and the development of antibacterial agents has already been demonstrated.
Biological materials, recently, are the building blocks of several self-assembling peptide and protein systems. The main challenge in molecular self-assembly is to design molecular building blocks that can undergo spontaneous organization. These cyclic peptides were produced by an alternating even number of D-and L-amino acids, which interact through non-covalent interactions to an array of selfassembled nanotubes. Physicochemical properties of structure of some peptide nanorings in couple form, with the support of a biocompatible and biodegradable polylactic acid, (PLA) have been calculated by quantum mechanical calculations within the Onsager self-consistent reaction field (SCRF) model using a Hartree-Fock method (RHF) at the RHF/STO-3G (5D-7F) level in water medium at 310 K. Four rings, Cyclo [-(D-Gly-L-Gly) 3 ] (A), Cyclo [-(D-Gly-L-Ala) 3 ] (B), Cyclo [-(D-Gly-L-aminoGly) 3 ](C), Cyclo [-(D-Gly-L-hydroxyGly) 3 ] (D), are designed in a couple form and geometrically optimized nea...
Acta biomaterialia, 2017
The ability to guide molecular self-assembly at the nanoscale into complex macroscopic structures could enable the development of functional synthetic materials that exhibit properties of natural tissues such as hierarchy, adaptability, and self-healing. However, the stability and structural integrity of these kinds of materials remains a challenge for many practical applications. We have recently developed a dynamic biopolymer-peptide co-assembly system with the capacity to grow and undergo morphogenesis into complex shapes. Here we explored the potential of different synthetic (succinimidyl carboxymethyl ester, poly (ethylene glycol) ether tetrasuccinimidyl glutarate and glutaraldehyde) and natural (genipin) cross-linking agents to stabilize membranes made from these biopolymer-peptide co-assemblies. We investigated the cross-linking efficiency, resistance to enzymatic degradation, and mechanical properties of the different cross-linked membranes. We also compared their biocompati...
Chemical Science, 2022
The dynamic combination of aromatics and peptides yields functional supramolecular biopolymers which self-assemble hierarchically and adapt through non-covalent interactions and/or reversible covalent reactions.
Supramolecular Chemistry, 2012
A tris-pyridyl-substituted Lissoclinum-type cyclic peptide forms a trinuclear molecular capsule on addition of Ag(I) ions and an infinite one-dimensional coordination polymer on addition of Pd(II) ions.
culturing and energy materials . The mechanical properties of organogels are the key technique problems that needed to improve for applications.
Macromolecular Bioscience, 2007
Molecular self-assembly is ubiquitous in Nature, from lipids that form oil droplets in water, and surfactants that form micelles and other complex structures in water, to sophisticated multiunit ribosome and virus assemblies. Nature is a grand master who utilizes the strategy to bottom-up build hierarchical materials. These elegant molecular self-assembly systems lie at the interface between biochemistry, molecular biology, peptide and protein chemistry, macromolecular science, materials science, and engineering. The key elements are chemical
Doklady Biochemistry and Biophysics, 2012
The Journal of Organic Chemistry, 2004
A novel cysteine derivative, N R-trityl-S-(9H-xanthen-9-yl)-L-cysteine [Trt-Cys(Xan)-OH] has been introduced for peptide synthesis, specifically for application to a new strategy for the preparation of cyclic peptides. The following steps were carried out to synthesize the cyclic model peptide cyclo(Cys-Thr-Abu-Gly-Gly-Ala-Arg-Pro-Asp-Phe): (i) side-chain anchoring of Fmoc-Asp-OAl via its free-carboxyl as a p-alkoxybenzyl ester to a solid support; (ii) stepwise chain elongation of the peptide by standard Fmoc/tBu solid-phase chemistry; (iii) removal of the N-terminal Fmoc group; (iv) coupling of Trt-Cys(Xan)-OH; (v) selective Pd(0)-promoted cleavage of the C-terminal allyl ester; (vi) coupling of the C-terminal residue, i.e., H-Phe-SBzl, preactivated as a thioester; (vii) selective removal of the N R-Trt and S-Xan protecting groups under very mild acid conditions; (viii) on-resin cyclization by native chemical ligation in an aqueous milieu; and (ix) final acidolytic cleavage of the cyclic peptide from the resin. The strategy was evaluated for three supports: poly[N,Ndimethacrylamide-co-poly(ethylene glycol)] (PEGA), cross-linked ethoxylate acrylate resin (CLEAR), and poly(ethylene glycol)-polystyrene (PEG-PS) graft resin supports. For PEGA and CLEAR, the desired cyclic product was obtained in 76-86% overall yield with initial purities of ∼70%, whereas for PEG-PS (which does not swell nearly as well in water), results were inferior. Solid-phase native chemical ligation/cyclization methodology appears to have advantages of convenience and specificity, which make it promising for further generalization.
Angewandte Chemie (International ed. in English), 2016
A cyclic octapeptide composed of hydroxy-functionalized γ-amino acids folds in a "V-shaped" conformation that allows the selective recognition of anions such as chloride, nitrate, and carbonate. The process involves the simultaneous self-assembly of six peptide subunits and the recognition of four anions to form a tetrahedral structure, in which the anions are located at the corners of the resulting structure. Each anion is coordinated to three different peptides. The structure was fully characterized by several techniques, including NMR spectroscopy and X-ray diffraction, and the material was able to facilitate the transmembrane transport of chloride ions.
Advanced Materials, 2009
Investigation of self-organization behavior of organic (semi)conductors became very important recently, since their physical properties and performance in organic electronic devices strongly depend on ordering effects, on both molecular and nanoscale levels. [1] In this respect, bioinspired functionalization of conjugated systems might greatly enhance the diversity of electronically interesting assemblies, and potentially allow for the rational design of hierarchically ordered nanostructures. Thus, from possible hybrids of conjugated backbones, the combination of oligo-or polythiophenes with biomolecules, such as nucleotides, [3] carbohydrates, or peptides, are interesting. Particularly, the latter appears to be attractive, because interplay between different intermolecular forces in the peptide and oligothiophene segments results in competing self-assembly motifs. Hence, very specific organization properties can be expected. Whereas thiophene-based materials typically form well-organized 2D lamellar superstructures due to van der Waals interactions of alkyl side chains, and stack into the third dimension via p-p interactions, [6] secondary structures of peptides, preferentially bsheets or a-helices, are governed by stronger and directed hydrogen-bond formation. The high tendency of peptides to adopt well-defined secondary-structure motifs has been exploited recently to guide self-organization of a broad range of synthetic polymers. [8] Attention has mainly been devoted to the b-sheet motif, leading to anisotropic fibrillar or fiber-like structures. [9] However, other highly interesting assembly motifs, for example the coiled-coil motif, were exploited, resulting in distinct nanoobjects by the lateral assembly of amphiphilic a-helices. We recently presented the first conjugate between a regioregularly alkylated quaterthiophene and a pentapeptide consisting of a silk-inspired sequence of alanine-glycine repeats, which is known to adopt b-sheet structures. [5a] Unexpected and novel 3D nanostructures were found, suggesting that short peptide sequences may indeed influence the nanoscale structure, and ultimately, properties of organic semiconducting materials.
Soft Matter, 2013
A number of cyclic peptides including [FR] 4 , [FK] 4 , [WR] 4 , [CR] 4 , [AK] 4 , and [WK] n (n = 3-5) containing L-amino acids were produced using solid-phase peptide synthesis. We hypothesized that an optimal balance of hydrophobicity and charge could generate self-assembled nanostructures in aqueous solution by intramolecular and/or intermolecular interactions. Among all the designed peptides, [WR] n (n = 3-5) generated self-assembled vesicle-like nanostructures at room temperature as shown by transmission electron microscopy (TEM), scanning electron microscopy (SEM), and/or dynamic light scattering (DLS). This class of peptides represents the first report of surfactant-like cyclic peptides that self-assemble into nanostructures. A plausible mechanistic insight into the self-assembly of [WR] 5 was obtained by molecular modeling studies. Modified [WR] 5 analogues, such as [W Me R] 5 , [WR (Me)2 ] 5 , [W Me R (Me)2 ] 5 , and [WdR] 5 , exhibited different morphologies to [WR] 5 as shown by TEM observations. [WR] 5 exhibited a significant stabilizing effect for generated silver nanoparticles and glyceraldehyde-3-phosphate dehydrogenase activity. These studies established a new class of surfactant-like cyclic peptides that self-assembled into nanostructures and could have potential applications for the stabilization of silver nanoparticles and protein biomolecules.
Chemical Science, 2013
We describe the solution assembly of polymer-cyclic peptide conjugates into nanotubes, by direct in situ measurements. The conjugates were assembled by exploiting the b-sheet assembly of the alt(D,L) cyclic octapeptide core. The conjugated polymer permits solubilization of the peptide and the resulting nanotubes, thus allowing for the first time the direct study of the assembly mechanism of this system. The resulting materials present unique properties for a wide range of applications. We find that the polymer can act to both shield the peptide core from the solvent and to put strain on the peptide core through steric repulsions. By controlling both the solvent mixture and the length of the polymer, control over the length of the resulting nanotubes can be obtained. In addition, monitoring the assembly with temperature allows the strength of the assembly to be probed, adding evidence for a cooperative mechanism of assembly. Finally, selective deuteration of the polymer component in SANS analyses leads to the precise measurement of the nanotubes core dimensions, and by cross-linking the polymeric shell, the structure of the nanotubes in solution are confirmed by transmission electron microscopy (TEM). This study establishes the fundamentals needed for the design and control of these new materials.
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