The simple-septate basidiomycetes: a synopsis

Fungal Diversity, 2019

The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406-430 Mya, classes are 211-383 Mya, and orders are 99-323 Mya, which are largely consistent with previous studies. In this study, all phylo-genetically supported families were dated, with the families of Agaricomycotina diverging from 27-178 Mya, Puccin-iomycotina from 85-222 Mya, and Ustilaginomycotina from 79-177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.

Mycologia

Many homobasidiomycetes are characterized by a combination of gloeocystidia and amyloid basidiospores. They display a great variation in basidioma morphology, including erect and effused forms and gilled and nongilled forms. Earlier studies have shown these taxa to be related, and the group has been named the russuloid clade. Phylogenetic relationships among russuloid basidiomycetes were investigated using sequence data from the nuclear 5.8S, ITS2 and large-subunit rDNA genes. A dataset including 127 ingroup sequences representing 43 genera and ca 120 species were analyzed by maximumparsimony and neighbor-joining methods. The sampling of taxa had an emphasis on nongilled taxa and two-thirds of the species possessed corticioid basidiomata. Thirteen major well-supported clades were identified within the russuloid clade. All clades except one include corticioid species. Ten characters from basidioma morphology and cultured mycelium were observed and evaluated. Results suggest that gloeocystidia are a synapomorphy for taxa within the russuloid clade while the amyloidity of spores is inconsistent. The ornamentation of spores and type of nuclear behavior seems to be informative characters at genus level. The agaricoid genera Lactarius and Russula are nested in a clade with corticioid species at the basal position. The new combinations Boidinia aculeata, Gloeodontia subasperispora, Gloeocystidiopsis cryptacantha and Megalocystidium wakullum are proposed.

2011

2006

The subphylum Ustilaginomycotina comprises about 1500 species of basidiomycetous plant parasites. They are usually dimorphic, producing a saprobic haploid yeast phase and a parasitic dikaryotic hyphal phase. With only a few exceptions they occur on angiosperms and are found mainly on members of the Poaceae and Cyperaceae. Molecular methods recently have shown that anamorphic species such as members of Malassezia or Tilletiopsis should be included in this group. Here we present the most recent consensus as to the phylogeny of this group and discuss its relevant characteristics. Our morphological, ultrastructural and molecular phylogenetic data point to the existence of three lines of Ustilaginomycotina: Entorrhizomycetes, Ustilaginomycetes and Exobasidiomycetes. Entorrhizomycetes is represented by Entorrhizales, a small group of unusual teliosporic root parasites on Juncaceae and Cyperaceae. Ustilaginomycetes, to which the majority of Ustilaginomycotina belong, is a teliosporic and gastroid group characterized by the presence of enlarged interaction zones. Ustilaginomycetes is dichotomous, consisting of predominantly holobasidiate Urocystales and predominantly phragmobasidiate Ustilaginales. Exobasidiomycetes forms local interaction zones. This group is predominantly holobasidiate and consists of teliosporic Doassansiales, Entylomatales, Georgefischeriales and Tilletiales, nonteliosporic Ceraceosorales, Exobasidiales and Microstromatales, as well as the anamorphic Malasseziales. Entorrhizomycetes, Exobasidiomycetes and Ceraceosorales are proposed as new taxa, and the description of Ustilaginomycetes is emended.

Molecular Ecology, 1998

We have assembled a sequence database for 80 genera of Basidiomycota from the Hymenomycete lineage (sensu Swann & Taylor 1993) for a small region of the mitochondrial large subunit rRNA gene. Our taxonomic sample is highly biased toward known ectomycorrhizal (EM) taxa, but also includes some related saprobic species. This gene fragment can be amplified directly from mycorrhizae, sequenced, and used to determine the family or subfamily of many unknown mycorrhizal basidiomycetes. The method is robust to minor sequencing errors, minor misalignments, and method of phylogenetic analysis. Evolutionary inferences are limited by the small size and conservative nature of the gene fragment. Nevertheless two interesting patterns emerge: (i) the switch between ectomycorrhizae and saprobic lifestyles appears to have happened convergently several and perhaps many times; and (ii) at least five independent lineages of ectomycorrhizal fungi are characterized by very short branch lengths. We estimate that two of these groups radiated in the mid-Tertiary, and we speculate that these radiations may have been caused by the expanding geographical range of their host trees during this period. The aligned database, which will continue to be updated, can be obtained from the following site on the WorldWide Web: http://mendel.berkeley.edu/boletus.html.

Fungal systematics and evolution, 2018

The taxonomy of the corticioid fungi from the class Atractiellomycetes (Pucciniomycotina, Basidiomycetes) currently addressed to the genus Helicogloea, is revised based on morphological and nuclear ribosomal DNA (ITS and LSU) data. The genus is restricted to 25 species with semitranslucent, gelatinous basidiocarps lacking differentiated cystidia and clamps on hyphae, of which 11 are described as new to science. The asexual genus Leucogloea is placed as a synonym of Helicogloea s. str. Since the type species of Saccoblastia, S. ovispora, is combined to Helicogloea, a new genus, Saccosoma, is introduced to encompass Saccoblastia farinacea and six related species, one of which is described as new. In contrast to Helicogloea in the strict sense, the basidiocarps of Saccosoma are arid, not gelatinized, and hyphae are clamped. The third lineage of the corticioid Atractiellomycetes is represented by the Bourdotigloea vestita complex. Species of Bourdotigloea are devoid of clamps but often possess well-differentiated cystidia, as well as long, cylindrical-fusiform basidiospores. Bourdotigloea encompasses nine species, of which six are described here as new.

Canadian Journal of Botany, 2006

The Wallemiomycetes includes three species of molds from the genus Wallemia . These fungi are adapted to environments of high osmotic stress, contaminate various foods, cause respiratory disease, and have an unusual mode of asexual reproduction. Wallemia was recently proposed as a new class based on 18S ribosomal RNA gene sequences to accommodate the isolated position of the clade in the Basidiomycota. We analyzed the phylogenetic position of the Wallemiomycetes using 3451 nucleotide characters of the 18S, 25S, and 5.8S ribosomal RNA genes and 1282 amino acid positions of rpb1, rpb2, and tef1 nuclear protein-coding genes across 91 taxa. Different gene regions and methods of phylogenetic inference produce mildly conflicting placements of the Wallemiomycetes. Parsimony analyses of nrDNA data suggest that the Wallemiomycetes is an early diverging lineage of Basidiomycota, occupying a basal position near the Entorrhizomycetidae. Ultrastructural data, some Bayesian analyses, and amino ac...

Mycological Research, 2008

Few basidiomycetes are known to have a coelomycete anamorph. The partial SSU and LSU of nu-rDNA of three coelomycete genera (Chaetospermum, Giulia, Mycotribulus) were sequenced to determine their phylogenetic relationship. M. mirabilis was well placed in the Physalacriaceae, Agaricales, whereas G. tenuis clusters with the Corticiaceae, Corticiales. C. camelliae and C. artocarpi form a close relationship with the Sebacinaceae, Sebacinales. Although morphologically these coelomycetes are pycnidial and with appendaged conidia, they show no consistency in their phylogenetic relationship, belonging to disparate major taxonomic groups with putative teleomorphs in the Agaricales, Corticiales and Sebacinales. Further molecular studies of coelomycetes may be rewarding to evaluate their phylogenetic affinities.

Nordic Journal of Botany, 1995

Morphological and cultural studies of Polyporus macularissimus and P. portentosus are presented. Neolentiporus gen. nov. is proposed to accommodate P. macularissimus, a species with a striking macromorphological similarity with the north temperate P. squamosus. The new genus is characterized by medium to large stipitate fruitbodies with a poroid hymenophore, circular to flabellate pilei with a scaly surface and an excentric or lateral stipe that sometimes is reduced to a short, robust umbo. The hyphal system is dimitic with clamped, irregularly thick-walled generative hyphae that do not react with cresyl-blue, and terminal, unbranched, thick-walled skeletal hyphae that are strongly metachromatic in cresyl-blue. Spores are cylindric, hyaline, thin-walled, inamyloid and binucleate. The sexuality is bipolar, the nuclear behavior is astatocoenocytic and the associated wood-rot is brown. The new genus is regarded as the poroid counterpart of the agaricoid Neolentinus. Polyporus portenrosus is included in Laetiporus on the basis of its yellowish fruitbodies, its soft, punky context, its hyphal system composed of simple septate generative hyphae and binding hyphae, its holocoenocytic nuclear behavior and its associated brown wood-rot. A new code symbol, i.e. '9s' is proposed to codify the presence, in cultures, of simple-septate generative hyphae with irregularly thickened walls.

Nordic Journal of Botany, 1994

Morphological and cultural studies of Polyporus macularissimus and P. portentosus are presented. Neolentiporus gen. nov. is proposed to accommodate P. macularissimus, a species with a striking macromorphological similarity with the north temperate P. squamosus. The new genus is characterized by medium to large stipitate fruitbodies with a poroid hymenophore, circular to flabellate pilei with a scaly surface and an excentric or lateral stipe that sometimes is reduced to a short, robust umbo. The hyphal system is dimitic with clamped, irregularly thick-walled generative hyphae that do not react with cresyl-blue, and terminal, unbranched, thick-walled skeletal hyphae that are strongly metachromatic in cresyl-blue. Spores are cylindric, hyaline, thin-walled, inamyloid and binucleate. The sexuality is bipolar, the nuclear behavior is astatocoenocytic and the associated wood-rot is brown. The new genus is regarded as the poroid counterpart of the agaricoid Neolentinus. Polyporus portenrosus is included in Laetiporus on the basis of its yellowish fruitbodies, its soft, punky context, its hyphal system composed of simple septate generative hyphae and binding hyphae, its holocoenocytic nuclear behavior and its associated brown wood-rot. A new code symbol, i.e. '9s' is proposed to codify the presence, in cultures, of simple-septate generative hyphae with irregularly thickened walls.