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News: Epigenomics data analysis with R and Bioconductor
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483
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6 days ago • updated 5 days ago slizchap • 0
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tximport rhdf5
6 days ago • updated 1 day ago Sofia • 0
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Error in cnetplot
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8 days ago Simran • 0
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annotation RNASeqData
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best way to grouping GSM belonging to different datasets (with different platforms) and compare differential gene expression
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1
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reply
771
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Use of org.Rn.eg.db with GRCr8 reference genome
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22 days ago • updated 16 days ago Elizabeth • 0
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22 days ago • updated 21 days ago Luca • 0
0
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Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malformed error
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written 22 days ago by ▴ 110
46,431 results • Page 1 of 929
Recent ...
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Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
You can use the `AnnotationHub` ``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% sna…
Answer: List of Deprecated Packages for Bioc3.20 by shepherl 4.1k
HTqPCR has been fixed and will be re-instated in 3.21
Comment: Question about using LRT test for time course experiments with DESeq2 by Rob • 0
Just to pick up on this thread as its really helpful for understanding the LRT test. The LRT test is given any genes that change within the…
Comment: Support of parquet files for on-disk Bioconductor objects by btom66245 • 0
@[doodle jump][1] I encountered the exact same problem on both Mac and Windows. Thank you for your sharing. [1]: https://doodlejump24.…
Votes
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
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