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dar102
Last Activity: Mar 1 '18, 06:42 AM
Joined: Mar 1 '18
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dar102 started a topic Looping two files and count string occurrences of 2nd file in lines of first filein PythonLooping two files and count string occurrences of 2nd file in lines of first file
I need to generate permutation of some words (A T G C ) actually nucleotides for di-composition (eg AA AT AG AC), tri-composition (AAA AAT AAC AAG), tetra, penta etc (one at a time) and then check in the other file that contains sequences with some values the count of occurrences of each permutation. I generated the permutation list. Now I need to loop through the sequences only (splitting the sequences from values) for counting each of the permutation...
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