Download release 16.0 of the NCBI protein profile Hidden Markov models (HMMs) used by the Prokaryotic Genome Annotation Pipeline (PGAP)! Search this collection against your favorite prokaryotic proteins to identify their function using the HMMER sequence analysis package.
What’s New?
Release 16.0 contains:
- 17,078 HMMs maintained by NCBI
- 406 new HMMs since release 15.0
- The GO terms between NCBI HMMs and the corresponding Interpro entries were compared and evaluated over a substantial number of HMMs and updated (added: 307; deleted: 39; updated: 1,482).
You can search and view the details for these in the Protein Family Model collection, which also includes conserved domain architectures and BlastRules, and access all RefSeq proteins that these models name.
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If you have questions or would like to provide feedback, please reach out to us at info@ncbi.nlm.nih.gov.