
Mariana Morales Quinones
The field of autophagy has greatly expanded in the recent past, demonstrating that autophagy is critical for cell survival under a variety of stresses, including nutrient depletion, extreme environmental conditions and disease. There is a lot of interest in the mechanism of autophagosome formation and regulation, consequently while at graduate school I studied the protein-protein interactions and identified some of the factors that are important for autophagic transport.
At Dr. Stromhaug’s lab we utilized the Cytoplasm-to-vacuole targeting (Cvt) pathway in yeast. This is a type of selective autophagy that transports vacuolar proteases that are synthesized in cytosol, to the vacuole where they reside, using the autophagic machinery to package them into vesicles.
Morales Quinones, M., and Stromhaug, P.E. (2011). The propeptide of Aminopeptidase 1 mediates aggregation and vesicle formation in the Cytoplasm-to-vacuole targeting pathway. The Journal of biological chemistry. In press.
Morales Quinones, M., Long, K.A., and Stromhaug, P.E. (2012). The mechanism and regulation of autophagic receptor Atg19 binding to Ape1 aggregates during the Cytoplasm-to-vacuole targeting pathway in yeast. Submitted for publication.
We show that putative helical structures mediate binding between the cargo, Aminopeptidase 1 (Ape1), and the autophagic receptor Atg19. The same helical structure on Ape1 causes it to form aggregates in cytosol. Aggregation is critical for transport via the Cvt pathway, suggesting Ape1 aggregates function as a scaffold for recruitment of autophagic proteins and membrane, for vesicle formation. A new role for Atg1 and Atg13 in regulation of Atg19 localization to aggregates was also identified. Atg1 and Atg13 both play a role in autophagosome formation and interact with several Atg proteins, but their function is not well understood.
For these studies a novel in vitro assay was developed, which takes advantage of Ape1 aggregation to form large (over 0.5µm in diameter) Cvt complexes, and use these to study recruitment of autophagic proteins in a cell-free system. In addition, several molecular techniques were applied (expression cloning, gel electrophoresis, western blotting, immunoprecipitation, chromatography and differential centrifugation), as well as yeast two-hybrid screens and fluorescence microscopy.
Supervisors: Per E. Stromhaug
At Dr. Stromhaug’s lab we utilized the Cytoplasm-to-vacuole targeting (Cvt) pathway in yeast. This is a type of selective autophagy that transports vacuolar proteases that are synthesized in cytosol, to the vacuole where they reside, using the autophagic machinery to package them into vesicles.
Morales Quinones, M., and Stromhaug, P.E. (2011). The propeptide of Aminopeptidase 1 mediates aggregation and vesicle formation in the Cytoplasm-to-vacuole targeting pathway. The Journal of biological chemistry. In press.
Morales Quinones, M., Long, K.A., and Stromhaug, P.E. (2012). The mechanism and regulation of autophagic receptor Atg19 binding to Ape1 aggregates during the Cytoplasm-to-vacuole targeting pathway in yeast. Submitted for publication.
We show that putative helical structures mediate binding between the cargo, Aminopeptidase 1 (Ape1), and the autophagic receptor Atg19. The same helical structure on Ape1 causes it to form aggregates in cytosol. Aggregation is critical for transport via the Cvt pathway, suggesting Ape1 aggregates function as a scaffold for recruitment of autophagic proteins and membrane, for vesicle formation. A new role for Atg1 and Atg13 in regulation of Atg19 localization to aggregates was also identified. Atg1 and Atg13 both play a role in autophagosome formation and interact with several Atg proteins, but their function is not well understood.
For these studies a novel in vitro assay was developed, which takes advantage of Ape1 aggregation to form large (over 0.5µm in diameter) Cvt complexes, and use these to study recruitment of autophagic proteins in a cell-free system. In addition, several molecular techniques were applied (expression cloning, gel electrophoresis, western blotting, immunoprecipitation, chromatography and differential centrifugation), as well as yeast two-hybrid screens and fluorescence microscopy.
Supervisors: Per E. Stromhaug
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