Details
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Bug
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Status: Resolved
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Major
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Resolution: Fixed
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2.2.0
Description
When spark trying to kill speculative tasks because of another attempt has already success, sometimes the task throws "org.apache.spark.shuffle.FetchFailedException: Error in opening FileSegmentManagedBuffer" and the whole stage will fail.
Other active stages will also fail with error "org.apache.spark.shuffle.MetadataFetchFailedException: Missing an output location for shuffle" Then I checked the log in failed executor, there is not error like "MetadataFetchFailedException". So they just failed with no error.
18/03/26 23:12:09 INFO Executor: Executor is trying to kill task 2879.1 in stage 4.0 (TID 13023), reason: another attempt succeeded
18/03/26 23:12:09 ERROR ShuffleBlockFetcherIterator: Failed to create input stream from local block
java.io.IOException: Error in opening FileSegmentManagedBuffer{file=/hadoop02/yarn/local/usercache/pp_risk_grs_datamart_batch/appcache/application_1521504416249_116088/blockmgr-754a22fd-e8d6-4478-bcf8-f1d95f07f4a2/0c/shuffle_24_10_0.data, offset=263687568, length=87231}
at org.apache.spark.network.buffer.FileSegmentManagedBuffer.createInputStream(FileSegmentManagedBuffer.java:114)
at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:401)
at org.apache.spark.storage.ShuffleBlockFetcherIterator.next(ShuffleBlockFetcherIterator.scala:61)
at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at org.apache.spark.util.CompletionIterator.hasNext(CompletionIterator.scala:32)
at org.apache.spark.InterruptibleIterator.hasNext(InterruptibleIterator.scala:37)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at org.apache.spark.sql.execution.aggregate.ObjectHashAggregateExec$$anonfun$doExecute$1$$anonfun$2.apply(ObjectHashAggregateExec.scala:104)
at org.apache.spark.sql.execution.aggregate.ObjectHashAggregateExec$$anonfun$doExecute$1$$anonfun$2.apply(ObjectHashAggregateExec.scala:103)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:827)
at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$25.apply(RDD.scala:827)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.read(FileChannelImpl.java:164)
at sun.nio.ch.ChannelInputStream.read(ChannelInputStream.java:65)
at sun.nio.ch.ChannelInputStream.read(ChannelInputStream.java:109)
at sun.nio.ch.ChannelInputStream.read(ChannelInputStream.java:103)
at java.io.InputStream.skip(InputStream.java:224)
at org.spark_project.guava.io.ByteStreams.skipFully(ByteStreams.java:755)
at org.apache.spark.network.buffer.FileSegmentManagedBuffer.createInputStream(FileSegmentManagedBuffer.java:100)
... 28 more
And in Spark UI, I found the only failed task is 13023, which means killing speculative task make whole stage fails.
| Index | ID | Attempt | Status ▴ | Locality Level | Executor ID / Host | Launch Time | Duration | GC Time | Shuffle Read Size / Records | Write Time | Shuffle Write Size / Records | Errors |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2879 | 13023 | 1 (speculative) | FAILED | PROCESS_LOCAL | 33 / lvshdc2dn2202.lvs.****.com stdout stderr |
2018/03/26 23:12:09 | / | / | FetchFailed(BlockManagerId(33, lvshdc2dn2202.lvs.paypalinc.com, 33481, None), shuffleId=24, mapId=10, reduceId=2879, message= |
Attachments
Issue Links
- is related to
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- Resolved
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SPARK-28340 Noisy exceptions when tasks are killed: "DiskBlockObjectWriter: Uncaught exception while reverting partial writes to file: java.nio.channels.ClosedByInterruptException"
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- Resolved
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- links to
