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  1. Beam
  2. BEAM-1874

Google Cloud Storage TextIO read fails with gz-files having Content-Encoding: gzip header

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Details

    • Bug
    • Status: Open
    • P3
    • Resolution: Unresolved
    • 0.6.0
    • None
    • sdk-py-core
    • None

    Description

      We have gzipped text files in Google Cloud Storage that have the following metadata headers set:

      Content-Encoding: gzip
      Content-Type: application/octet-stream
      

      Trying to read these with apache_beam.io.ReadFromText yields the following error:

      ERROR:root:Exception while fetching 341565 bytes from position 0 of gs://...-c72fa25a-5d8a-4801-a0b4-54b58c4723ce.gz: Cannot have start index greater than total size
      Traceback (most recent call last):
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/gcp/gcsio.py", line 585, in _fetch_to_queue
          value = func(*args)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/gcp/gcsio.py", line 610, in _get_segment
          downloader.GetRange(start, end)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apitools/base/py/transfer.py", line 477, in GetRange
          progress, end_byte = self.__NormalizeStartEnd(start, end)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apitools/base/py/transfer.py", line 340, in __NormalizeStartEnd
          'Cannot have start index greater than total size')
      TransferInvalidError: Cannot have start index greater than total size
      
      WARNING:root:Task failed: Traceback (most recent call last):
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/runners/direct/executor.py", line 300, in __call__
          result = evaluator.finish_bundle()
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/runners/direct/transform_evaluator.py", line 206, in finish_bundle
          bundles = _read_values_to_bundles(reader)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/runners/direct/transform_evaluator.py", line 196, in _read_values_to_bundles
          read_result = [GlobalWindows.windowed_value(e) for e in reader]
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/concat_source.py", line 79, in read
          range_tracker.sub_range_tracker(source_ix)):
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/textio.py", line 155, in read_records
          read_buffer)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/textio.py", line 245, in _read_record
          sep_bounds = self._find_separator_bounds(file_to_read, read_buffer)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/textio.py", line 190, in _find_separator_bounds
          file_to_read, read_buffer, current_pos + 1):
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/textio.py", line 212, in _try_to_ensure_num_bytes_in_buffer
          read_data = file_to_read.read(self._buffer_size)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/fileio.py", line 460, in read
          self._fetch_to_internal_buffer(num_bytes)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/fileio.py", line 420, in _fetch_to_internal_buffer
          buf = self._file.read(self._read_size)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/gcp/gcsio.py", line 472, in read
          return self._read_inner(size=size, readline=False)
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/gcp/gcsio.py", line 516, in _read_inner
          self._fetch_next_if_buffer_exhausted()
        File "/Users/samuli.holopainen/miniconda2/envs/python-dataflow/lib/python2.7/site-packages/apache_beam/io/gcp/gcsio.py", line 577, in _fetch_next_if_buffer_exhausted
          raise exn
      TransferInvalidError: Cannot have start index greater than total size
      

      After removing the Content-Encoding header the read works fine.

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            Unassigned Unassigned
            smphhh Samuli Holopainen
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            Dates

              Created:
              Updated: