International Journal of Environmental Science & Technology, 2006
Effect of soil salinity on physico-chemical and biological properties renders the salt-affected s... more Effect of soil salinity on physico-chemical and biological properties renders the salt-affected soils unsuitable for soil microbial processes and growth of the crop plants. Soil aggregation around roots of the plants is a function of the bacterial exo-polysaccharides (EPS), however, such a role of the EPS-producing bacteria in the saline environments has rarely been investigated. Pot experiments were conducted to observe the effects of inoculating six strains of EPS-producing bacteria on growth of primary (seminal) roots and its relationship with saccharides, cations (Ca 2+ , Na + , K + ) contents and mass of rhizosheath soils of roots of the wheat plants grown in a salt-affected soil. A strong positive relationship of RS with different root growth parameters indicated that an integrated influence of various biotic and abiotic RS factors would have controlled and promoted growth of roots of the inoculated wheat plants. The increase in root growth in turn could help inoculated wheat plants to withstand the negative effects of soil salinity through an enhanced soil water uptake, a restricted Na + influx in the plants and the accelerated soil microbial process involved in cycling and availability of the soil nutrients to the plants. It was concluded that inoculation of the EPS-producing would be a valuable tool for amelioration and increasing crop productivity of the salt-affected soils.
Abstract A pot experiment was conducted to elucidate the effects of inoculating five exopolysacch... more Abstract A pot experiment was conducted to elucidate the effects of inoculating five exopolysaccharide (EPS)-producing bacterial strains on the dry matter yield and the uptake of K+, Na+, and Ca2+ by wheat seedlings grown in a moderately saline soil. The bacteria were isolated from the rhizosphere soil (RS) of wheat grown in a salt-affected soil and included Aeromonas hydrophila/caviae (strain MAS-765), Bacillus insolitus (strain MAS17), and Bacillus sp. (strains MAS617, MAS620 and MAS820). The inoculation substantially increased the dry matter yields of roots (149–527% increase) and shoots (85–281% increase), and the mass of RS (176–790% increase). All the strains, except MAS617, also increased the RS mass/root mass ratio as well as the population density of EPS bacteria on the rhizoplane, and both these parameters were significantly correlated with the content of water-insoluble saccharides in the RS. Inoculation restricted Na+ uptake by roots, which was not attributable to the binding of Na+ by the RS, or to the ameliorative effects of Ca2+ under salinity. The decreased Na+ uptake by roots of inoculated than uninoculated plants was probably caused by a reduced passive (apoplasmic) flow of Na+ into the stele due to higher proportion of the root zones covered with soil sheaths in inoculated treatments. Among the strains tested, MAS820 was the most efficient in all respects, whereas MAS617 was the least effective. Results suggested that inoculating selected EPS-producing bacteria could serve as a useful tool for alleviating salinity stress in salt-sensitive plants.
Abstract: This study was conducted to isolate and identify the EPS-producing bacteria associated... more Abstract: This study was conducted to isolate and identify the EPS-producing bacteria associated with the roots of three wheat lines grown in saline and non-saline soil. Results indicated the presence of various EPS-producing bacterial genera in unplanted saline and non-saline soil, rhizosphere and rhizoplane of the three wheat lines. Bacillus sp. were more variable in unplanted saline than non-saline soil. In contrast to uniform distribution of Bacillus sp. in unplanted soils, other EPS-producing bacterial genera isolated from rhizosphere and rhizplane were more numerous and diversified. Frequent occurrence of Microbacterium sp. in the soil and rhizosphere of the plants invoke the desire for more research work to explore the role of this bacterium in the saline environment.
Lodgepole pine (Pinus contorta var. latifolia Engelm. ex S. Watson) and western red cedar (Thuja ... more Lodgepole pine (Pinus contorta var. latifolia Engelm. ex S. Watson) and western red cedar (Thuja plicata Donn ex D. Don) are capable of growing in soils that are severely nitrogen-limited. A rarely evaluated but possible nitrogen source for gymnosperms growing at nutrient poor sites is nitrogen fixation by endophytic bacteria. To investigate this possibility, we looked for nitrogen-fixing bacteria in surface-sterilized needle, stem, and root tissues of naturally regenerating lodgepole pine and western red cedar seedlings (2-4 years old) and trees (>20 years old) growing near Williams Lake, Chilliwack Lake, and Boston Bar, British Columbia, Canada. Ninety-nine bacterial isolates were obtained by plating surface-sterilized plant tissue extracts on tryptic soy agar (TSA) and combined carbon medium agar (CCMA), a nitrogen-free medium. Bacterial isolates were identified using gas chromatographic fatty acid methyl ester (GC-FAME) and 16S rRNA gene analyses and were evaluated for nitrogenase activity using an acetylene reduction assay. Representatives of the genera Bacillus and Paenibacillus dominated the culturable endophytic bacterial community in tissues of both tree species, with three Paenibacillus isolates and one Dyadobacter fermentans strain demonstrating consistently high acetylene-reduction activities. Our results raise the possibility that endophytic nitrogen fixation provides a supplementary nitrogen source for naturally regenerated lodgepole pine and western red cedar.
Very different toxins are responsible for the two types of gastrointestinal diseases caused by Ba... more Very different toxins are responsible for the two types of gastrointestinal diseases caused by Bacillus cereus: the diarrhoeal syndrome is linked to nonhemolytic enterotoxin NHE, hemolytic enterotoxin HBL, and cytotoxin K, whereas emesis is caused by the action of the depsipeptide toxin cereulide. The recently identified cereulide synthetase genes permitted development of a molecular assay that targets all toxins known to be involved in food poisoning in a single reaction, using only four different sets of primers. The enterotoxin genes of 49 strains, belonging to different phylogenetic branches of the B. cereus group, were partially sequenced to encompass the molecular diversity of these genes. The sequence alignments illustrated the high molecular polymorphism of B. cereus enterotoxin genes, which is necessary to consider when establishing PCR systems. Primers directed towards the enterotoxin complex genes were located in different CDSs of the corresponding operons to target two toxin genes with one single set of primers. The specificity of the assay was assessed using a panel of B. cereus strains with known toxin profiles and was successfully applied to characterize strains from food and clinical diagnostic labs as well as for the toxin gene profiling of B. cereus isolated from silo tank populations.
International Journal of Environmental Science & Technology, 2006
Effect of soil salinity on physico-chemical and biological properties renders the salt-affected s... more Effect of soil salinity on physico-chemical and biological properties renders the salt-affected soils unsuitable for soil microbial processes and growth of the crop plants. Soil aggregation around roots of the plants is a function of the bacterial exo-polysaccharides (EPS), however, such a role of the EPS-producing bacteria in the saline environments has rarely been investigated. Pot experiments were conducted to observe the effects of inoculating six strains of EPS-producing bacteria on growth of primary (seminal) roots and its relationship with saccharides, cations (Ca 2+ , Na + , K + ) contents and mass of rhizosheath soils of roots of the wheat plants grown in a salt-affected soil. A strong positive relationship of RS with different root growth parameters indicated that an integrated influence of various biotic and abiotic RS factors would have controlled and promoted growth of roots of the inoculated wheat plants. The increase in root growth in turn could help inoculated wheat plants to withstand the negative effects of soil salinity through an enhanced soil water uptake, a restricted Na + influx in the plants and the accelerated soil microbial process involved in cycling and availability of the soil nutrients to the plants. It was concluded that inoculation of the EPS-producing would be a valuable tool for amelioration and increasing crop productivity of the salt-affected soils.
Abstract A pot experiment was conducted to elucidate the effects of inoculating five exopolysacch... more Abstract A pot experiment was conducted to elucidate the effects of inoculating five exopolysaccharide (EPS)-producing bacterial strains on the dry matter yield and the uptake of K+, Na+, and Ca2+ by wheat seedlings grown in a moderately saline soil. The bacteria were isolated from the rhizosphere soil (RS) of wheat grown in a salt-affected soil and included Aeromonas hydrophila/caviae (strain MAS-765), Bacillus insolitus (strain MAS17), and Bacillus sp. (strains MAS617, MAS620 and MAS820). The inoculation substantially increased the dry matter yields of roots (149–527% increase) and shoots (85–281% increase), and the mass of RS (176–790% increase). All the strains, except MAS617, also increased the RS mass/root mass ratio as well as the population density of EPS bacteria on the rhizoplane, and both these parameters were significantly correlated with the content of water-insoluble saccharides in the RS. Inoculation restricted Na+ uptake by roots, which was not attributable to the binding of Na+ by the RS, or to the ameliorative effects of Ca2+ under salinity. The decreased Na+ uptake by roots of inoculated than uninoculated plants was probably caused by a reduced passive (apoplasmic) flow of Na+ into the stele due to higher proportion of the root zones covered with soil sheaths in inoculated treatments. Among the strains tested, MAS820 was the most efficient in all respects, whereas MAS617 was the least effective. Results suggested that inoculating selected EPS-producing bacteria could serve as a useful tool for alleviating salinity stress in salt-sensitive plants.
Abstract: This study was conducted to isolate and identify the EPS-producing bacteria associated... more Abstract: This study was conducted to isolate and identify the EPS-producing bacteria associated with the roots of three wheat lines grown in saline and non-saline soil. Results indicated the presence of various EPS-producing bacterial genera in unplanted saline and non-saline soil, rhizosphere and rhizoplane of the three wheat lines. Bacillus sp. were more variable in unplanted saline than non-saline soil. In contrast to uniform distribution of Bacillus sp. in unplanted soils, other EPS-producing bacterial genera isolated from rhizosphere and rhizplane were more numerous and diversified. Frequent occurrence of Microbacterium sp. in the soil and rhizosphere of the plants invoke the desire for more research work to explore the role of this bacterium in the saline environment.
Lodgepole pine (Pinus contorta var. latifolia Engelm. ex S. Watson) and western red cedar (Thuja ... more Lodgepole pine (Pinus contorta var. latifolia Engelm. ex S. Watson) and western red cedar (Thuja plicata Donn ex D. Don) are capable of growing in soils that are severely nitrogen-limited. A rarely evaluated but possible nitrogen source for gymnosperms growing at nutrient poor sites is nitrogen fixation by endophytic bacteria. To investigate this possibility, we looked for nitrogen-fixing bacteria in surface-sterilized needle, stem, and root tissues of naturally regenerating lodgepole pine and western red cedar seedlings (2-4 years old) and trees (>20 years old) growing near Williams Lake, Chilliwack Lake, and Boston Bar, British Columbia, Canada. Ninety-nine bacterial isolates were obtained by plating surface-sterilized plant tissue extracts on tryptic soy agar (TSA) and combined carbon medium agar (CCMA), a nitrogen-free medium. Bacterial isolates were identified using gas chromatographic fatty acid methyl ester (GC-FAME) and 16S rRNA gene analyses and were evaluated for nitrogenase activity using an acetylene reduction assay. Representatives of the genera Bacillus and Paenibacillus dominated the culturable endophytic bacterial community in tissues of both tree species, with three Paenibacillus isolates and one Dyadobacter fermentans strain demonstrating consistently high acetylene-reduction activities. Our results raise the possibility that endophytic nitrogen fixation provides a supplementary nitrogen source for naturally regenerated lodgepole pine and western red cedar.
Very different toxins are responsible for the two types of gastrointestinal diseases caused by Ba... more Very different toxins are responsible for the two types of gastrointestinal diseases caused by Bacillus cereus: the diarrhoeal syndrome is linked to nonhemolytic enterotoxin NHE, hemolytic enterotoxin HBL, and cytotoxin K, whereas emesis is caused by the action of the depsipeptide toxin cereulide. The recently identified cereulide synthetase genes permitted development of a molecular assay that targets all toxins known to be involved in food poisoning in a single reaction, using only four different sets of primers. The enterotoxin genes of 49 strains, belonging to different phylogenetic branches of the B. cereus group, were partially sequenced to encompass the molecular diversity of these genes. The sequence alignments illustrated the high molecular polymorphism of B. cereus enterotoxin genes, which is necessary to consider when establishing PCR systems. Primers directed towards the enterotoxin complex genes were located in different CDSs of the corresponding operons to target two toxin genes with one single set of primers. The specificity of the assay was assessed using a panel of B. cereus strains with known toxin profiles and was successfully applied to characterize strains from food and clinical diagnostic labs as well as for the toxin gene profiling of B. cereus isolated from silo tank populations.
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Papers by Odile Berge