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MCCE4 Tutorial
Home
What is MCCE?
MCCE Mechanism
Installation
MCCE4-Alpha Automated
MCCE4-Alpha Compiled
MCCE4-Tools
PBE Solvers
Windows Users - WSL
Quick Start Tutorial
1 - Pre-check Protein Files
2 - pKₐ Calculation
3 - Eₘ Calculation
4 - Charge Microstate Analysis
5 - Hydrogen-Bond Microstates
Guide
MFE tutorial
pKa Analysis
Em Calculation
Customizing Runs
Multiple PDB Runs
MCCE Output Files
Interpreting MCCE Output
Creating Topology Files for MCCE4
Under the hood - run_mcce4
Microstate Analysis
Example Projects
MCCE Hydrogen Bond Characterization
Photosystem II Analysis
Finding Protein Loading Sites
Proton Loading Sites in Complex I
MCCE Benchmarks
MCCE4-Alpha GitHub
MCCE Success Stories
Learn about some projects at the GunnerLab @CCNY using MCCE4 and its toolkits.
Table of contents
MCCE Hydrogen Bond Characterization
Photosystem II Analysis
Finding Protein Loading Sites
Proton Loading Sites in Complex I
MCCE Benchmarks