Color Schemes Placed In Different Folder by Package Control

For some (really weird) reason the color schemes are all being placed in /Packages/User/SublimeLinter/. I've tried removing and reinstalling through package control and that didn't do the trick.

I've also tried disabling SublimeLinter and reinstalling. No luck.

Never had an issue like this before with Package Control. Not that I can recall anyways.

+1 I've experienced the exact same issue. I've had to revert to a clean install for now. It's a very strange issue...