Refresh Requirements

The requirements (particularly in requirements_dev.txt) are lagging a bit. Would be good to update them as was done with Zarr not too long ago.

FWIW on reflection I'm in favour of removing all but direct dependencies from requirements files and using PyUP bot to manage requirements files.

Sure. SGTM. We can at least try it and see how it goes if nothing else.

Would probably be worth adding a pip freeze line to the CIs. That way we can inspect dependency changes around times when issues emerge.

@jakirkham

Thanks @jakirkham, I've added pip freeze in #94.

#94 has been merged, this is resolved.

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