Considering the following file structure and contents.

.gitignore

web/app/themes/*/
!web/app/themes/theme
node_modules

ymir.yml

...
    build:
      include:
        - web/app/themes/theme

When the copy is being done, if the theme folder has a node_modules folder, this is being added to the deployment, despite the fact the folder is being ignored on .gitignore.

I think this is happening because we include the build.include on the last step. https://github.com/ymirapp/cli/blob/main/src/Build/CopyWordPressFilesStep.php which copy over the gitignored files.

A possible solution that I see is to apply the $finder->ignoreVCSIgnored(true); at the very end.

This is currently causing the copy of thousands of node_modules files to s3.