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perf(ddx-ad): transpose causal attention's contractions without their joins - #162

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@alxmrs alxmrs commented Oct 18, 2026 •

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Closes #153.

What changed. The contraction rule (#126, crates/ddx-ad/src/contraction.rs) differentiates a saved SUM(e_X · e_Y) over a join without rebuilding the join. Until now it missed both of causal attention's aggregates, which this PR now covers:

  • A mask. The scores' join, q JOIN k ON q.d = k.d WHERE q.t >= k.t, carries a filter across the sides. The filter reads only grouping keys (q.t, k.t), so every row of a group passes it or none does. The transpose now applies a conjunct like this to the cotangent's rows.
  • Sides of several inputs. The output, SUM(w.w / n.z * v.x) over weights ⋈ v ⋈ norm, joins three inputs. Inner joins can be regrouped, so the inputs are now split by which factors of the product read them. Here that's {weights, norm} (one row per score) and {v}, and each side is rebuilt as its own join. This is jax.grad's plan: transpose p = w / z per score, then p @ v. An input that no factor reads goes with the side its join conditions tie it to.

Each side is now transposed by the ordinary region rules (its projections, windows and inputs), starting from the cotangent of its factor. That cotangent is t, the contraction of the cotangent with the other side. This replaces #126's inlining of each side's factor down to one input's columns, which couldn't pass through a window: attention's weights side is a softmax window over the scores. t is most of the work. When a side reads it more than once (several inputs, or a window), it is materialized as a step.

Where attention's time went. Measured on the issue's query at 256 tokens with 64 features, timing each step of the program, on the same machine (i7-8700, 12 threads):

step main this PR what it was
region_1 225 ms (2.1 M rows) — the output's join at (token, token, feature) granularity, stored
window_0 212 ms — the softmax window's cotangent, rebuilding that same join
grad_0_q, grad_1_k 253 + 263 ms 19 + 24 ms rebuilt the masked join q ⋈ k
contraction_0 — 45 ms t for the scores' side (65,536 rows)
all steps 1,119 ms 283 ms of which the forward steps take 95 ms

So the backward steps go from about 1,020 ms to 190 ms, 5.4× less. The issue's hand-written JAX plan runs its backward in about 1.3× its forward; ddx's is now about 2× its forward steps. The three gradients agree with main's to about 1e-12 relative.

ad_perf (the run column, best of 3, same machine) shows no regression elsewhere, and nn gains too:

benchmark main this PR
matmul n=10,000 186 ms 198 ms
matmul n=50,000 860 ms 839 ms
nn 4,096 samples 363 ms 287 ms
attn L=128 186 ms 139 ms
attn L=256 517 ms 319 ms

matmul's sides are single inputs with no window, so its plan keeps #126's shape. Its difference from main is within run-to-run noise.

What could have gone wrong, and how the tests cover it. crates/ddx-datafusion/tests/contraction_transpose.rs compares each loss with a spelling that the general rule takes, on random tables with NULLs, NaNs, ±∞, missing rows and repeated keys. It also asserts which rule ran, by whether a gradient step rebuilds the join.

  • The oracle. Its old spelling, WHERE a.s + w.o >= 0, reads only grouping keys, so it is now a mask and would take the fast rule too. It now reads a join key instead: a.k IS NULL OR a.k + w.o >= 0, which also keeps every row.
  • Masks. a.s >= w.o, a mask beside a one-sided filter, and NULL grouping keys under a mask, where the mask is NULL and the row is dropped.
  • A divisor joined on a grouping key. SUM(p.val / z.val * v.val), differentiated in all three tables, in three join orders. Also with a fourth table that no factor reads, with repeated keys, so it repeats rows on its side. Dividing by a zero, NULL or infinite z must give the same NaNs and infinities as the general rule.
  • The issue's whole query: mask, MAX window, normalizer, with q, k and v all differentiated.
  • Rankings. Both sides are recomputed, the one that doesn't move too (it builds t), so the whole region's windows and LIMITs must be total, as under the general rule. A constant side read through a LIMIT is refused (CodeRabbit caught that the first version checked only the moving side).
  • A side in pieces. A side is the inputs its factors read, and its own conditions need not join them. In p JOIN v ON p.j = v.t JOIN z ON v.u = z.i with SUM(p.val / z.val * v.val), the side {p, z} would be rebuilt as p × z, a cross join the query never formed: quadratic where the forward pass is linear. Each side is now joined one input at a time, each tied by a condition to those before it, and the general rule applies when no order does that. A test pins it, and it fails on the earlier commit. (Found by a /code-review pass.)
  • The existing cases (perf(ddx-ad): transpose a contraction without rebuilding its join #126's matrix products, two-key joins, the two-layer network, a factor of two columns) pass unchanged.

.github/scripts/mutation_test.py's two contraction mutants are updated to the new code, and contraction_transpose.rs still kills both. A third mutant that drops the mask from the cotangent survives: a cotangent only ever has rows for groups the query kept, so the mask is never what removes a row. I kept it anyway, because it makes the rule correct without relying on that property of how cotangents are built. It costs one filter on the cotangent.

cargo test -p ddx-ad -p ddx-datafusion passes, as does cargo clippy --workspace --all-targets -- -D warnings.

Not split in two. In the issue thread I proposed one PR per rule. The second rule turned out to be a rewrite of how a side is transposed, and the mask is about ten lines inside it, so landing the first rule on code the second replaces seemed worse than one PR.

The third item in #153 (a region read by several reductions) is not needed: with these two rules, attention has no such region left, as the issue expected.

Design §4.3's paragraph on contractions and decision S19 describe the extension.

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Summary by CodeRabbit

  • New Features
    • Gradient calculations can now use optimized contraction for saved sums over more complex inner-join structures, including multi-input sides and causal attention.
    • Grouping-key-only join conditions and masks are supported in these cases. Unsupported query shapes continue to use the general gradient rule.
  • Documentation
    • Updated design documentation to describe the expanded contraction optimization and its fallback behavior.

… joins

The contraction rule missed both of attention's aggregates. The scores'
join carries the causal mask q.t >= k.t, and the output's region joins
three inputs. A conjunct that reads only grouping keys passes every row
of a group or none, so it now filters the cotangent instead. And a side
may hold several inputs: the joined inputs are split by which factors of
the product read them, each side is rebuilt as its own join, and each is
transposed by the region rules from its factor's cotangent, the
contraction t of the cotangent with the other side. This replaces
inlining each side's factor, which could not pass through a window. t is
materialized when a side reads it more than once. At 256 tokens,
attention's steps went from 1.12 s to 0.28 s. Design S19.

Closes #153.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01CvszJhH8pn8H9G69wEPMU2
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  • crates/ddx-ad/src/contraction.rs
  • crates/ddx-datafusion/tests/contraction_transpose.rs
  • docs/design.md

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📝 Walkthrough

The contraction transpose now supports eligible inner-join trees with product factors split across two sides. It rebuilds each side, applies grouping-key masks to cotangents, and transposes varying sides. Tests cover masks, NULL keys, divisors, causal attention, and unsupported LIMIT recomputation.

Changes: Contraction transpose

Layer / File(s) Summary
Partition and rebuild join sides
crates/ddx-ad/src/contraction.rs
The shape analysis flattens eligible inner-join trees, assigns leaves to factor-dependent sides, classifies join conditions, and rebuilds each side as a region.
Compute per-side cotangents
crates/ddx-ad/src/contraction.rs, crates/ddx-ad/src/forward.rs, crates/ddx-ad/src/transpose.rs, .github/scripts/mutation_test.py
The rule selects varying sides, aggregates the opposite side’s factor, handles NULL keys and grouping-key masks, and seeds region transposition with a NULL-skipping expression. Helpers become crate-visible, and mutation targets match the updated implementation.
Validate supported shapes and gradients
crates/ddx-datafusion/tests/contraction_transpose.rs, docs/design.md
Tests compare gradients with the general rule for masks, NULL keys, divisors, and causal attention, and check refusal of a LIMIT-containing recomputation. Design notes describe the expanded rule and attention query changes.

Priority: ➖ Normal

Estimated code review effort: 4 (Complex) | ~45 minutes

Change: Feature · Severity of issue fixed: Medium

Sequence Diagram(s)

sequenceDiagram
  participant Contraction
  participant Region
  participant Transposer
  Contraction->>Region: Rebuild selected join leaves
  Contraction->>Region: Append varying-side factor
  Contraction->>Transposer: Start region transpose with NULL-skipping seed
  Transposer->>Region: Process region rules and windows
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Merge Risk: ⚪ Minimal · up to db2a5

No unresolved issue identified here prevents merging after normal checks.

Security architecture risk: 🔵 Low · up to 65316

The change remains within gradient planning and execution, with no demonstrated expansion of privileges. However, recomputed, non-differentiated inputs can escape an existing consistency check, allowing previously rejected computations to produce inconsistent gradients.

Retained concerns

  • Medium · reliability · inferred: The whole-input deterministic-recomputation check has been replaced by checks on differentiated sides only. An eligible non-differentiated partner containing a LIMIT or window remains recomputed when building t, but does not pass through region_once and its ordered-constant refusal. Ties can consequently produce different rows from the forward computation, silently violating forward/backward consistency rather than rejecting the unsupported computation. Whole-region volatile/cut guards and ranking checks on differentiated sides remain, but do not cover this partner.
Security review details

Security Blast Radius

  • inferred — The demonstrated exposure is an eligible caller-supplied computation and the tables available through its existing execution context. The new materialized contraction relation uses the same backend table lifecycle; no additional service, credential, tenant or infrastructure authority is established by the reviewed source.

Trust Boundaries and Controls

  • observed — The specialized path rejects volatile regions, cuts, missing slot offsets and unsupported cross-side predicates. These are transformation eligibility and consistency controls, not authorization checks; crate-visible helpers do not themselves create an external trust boundary.

Resilience and Maintainability Implications

  • observed — Intermediate identity combines the program namespace with a per-transposer counter. Fresh namespaces use an atomic allocation component; explicitly shared namespaces require caller coordination. Execution cleanup follows returned results, so its source does not establish cleanup when an asynchronous run is cancelled before that cleanup block executes.
Pre-merge checks: Passed 5
Check name Status Explanation
Linked Issues check Passed The changes meet the coding requirements in [#153]. crates/ddx-ad/src/contraction.rs extends contraction transposition to join trees, grouping-key masks, and multi-input sides. It rebuilds and trans…
Out of Scope Changes check Passed The changes stay within [#153]. The mutation-test updates, crate-local visibility changes, focused regression tests, and docs/design.md update support the contraction extension. The changes do not i…
Docstring Coverage Passed Docstring coverage is 93.75% which is sufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 32 functions across 5 files. (1 skipped: 1 …
Description Check Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check Passed The title clearly and concisely describes the primary change: optimizing causal-attention contraction transposition by avoiding the joins. It matches the pull request objectives and changes.
Full details: Linked Issues check

Explanation

The changes meet the coding requirements in [#153]. crates/ddx-ad/src/contraction.rs extends contraction transposition to join trees, grouping-key masks, and multi-input sides. It rebuilds and transposes each side without rebuilding the full join. The implementation falls back when a side would require an unintended cross join or unsupported semantics. crates/ddx-datafusion/tests/contraction_transpose.rs compares the optimized and general rules for masks, NULLs, grouping-key divisors, join orders, rankings, disconnected side conditions, and the full causal-attention query. The optional multi-read region rule is not required because the new plan removes that region for attention.

Full details: Out of Scope Changes check

Explanation

The changes stay within [#153]. The mutation-test updates, crate-local visibility changes, focused regression tests, and docs/design.md update support the contraction extension. The changes do not implement the separate fused-kernel optimization or unrelated feature work.

Full details: Docstring Coverage

Explanation

Docstring coverage is 93.75% which is sufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 32 functions across 5 files. (1 skipped: 1 unsupported.)

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Actionable comments posted: 1


  • 🪄 Fix comments: Fix CodeRabbit comments on this PR
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Inline comments:
Review comments at @crates/ddx-ad/src/contraction.rs:
- Around line 141-155: Before the specialized transpose calls side for any
moving side, validate rankings for the complete saved input using the existing
check_rankings_are_total safeguard; do not limit the check to the side being
moved, since side recomputes both regions.

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Comment thread crates/ddx-ad/src/contraction.rs Resolved
alxmrs and others added 2 commits October 18, 2026 15:39
The side that does not move is recomputed to build t, so a LIMIT or a
non-total ranking inside it needs the same check the general rule
applies to the whole region, as #126's rule did.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01CvszJhH8pn8H9G69wEPMU2
…the general rule

A side is the inputs its factors read, which need not be joined by
conditions of their own: in p JOIN v ON p.j = v.t JOIN z ON v.u = z.i
with SUM(p.val / z.val * v.val), p and z each join only v, so the side
rebuilt alone was p x z, a cross join the query never formed. Each side
is now joined one input at a time, each tied by a condition to those
before it, and the general rule applies when no order does that.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01CvszJhH8pn8H9G69wEPMU2

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LGTM

@alxmrs
alxmrs merged commit 9452082 into main Oct 19, 2026
15 checks passed
@alxmrs
alxmrs deleted the perf/masked-contraction branch October 19, 2026 01:28
@github-actions github-actions Bot mentioned this pull request Oct 19, 2026
alxmrs added a commit to xqlsystems/xarray-sql that referenced this pull request Oct 21, 2026
ddxdb 0.3.3 keeps each gradient program between calls (xqlsystems/ddx#164),
plans each CTE an objective reads twice on its own (xqlsystems/ddx#168),
and differentiates attention's masked product as jax.grad does
(xqlsystems/ddx#162). Alternating runs with 0.3.2 on DataFusion:

- GPT training step, SGD: 2.8 s -> 1.2 s (first step 2.0 s)
- GPT training step, AdamW: 3.2 s -> 1.55 s
- attention gradient at 512 tokens: 2.8 s -> 1.1 s (window),
  2.7 s -> 1.3 s (GROUP BY)

Every check against JAX still passes.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NyN7idACeDMh94qrnFMu6h
alxmrs added a commit to xqlsystems/xarray-sql that referenced this pull request Oct 25, 2026
ddxdb 0.3.3 keeps each gradient program between calls (xqlsystems/ddx#164),
plans each CTE an objective reads twice on its own (xqlsystems/ddx#168),
and differentiates attention's masked product as jax.grad does
(xqlsystems/ddx#162). Alternating runs with 0.3.2 on DataFusion:

- GPT training step, SGD: 2.8 s -> 1.2 s (first step 2.0 s)
- GPT training step, AdamW: 3.2 s -> 1.55 s
- attention gradient at 512 tokens: 2.8 s -> 1.1 s (window),
  2.7 s -> 1.3 s (GROUP BY)

Every check against JAX still passes.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NyN7idACeDMh94qrnFMu6h
alxmrs added a commit to xqlsystems/xarray-sql that referenced this pull request Oct 25, 2026
ddxdb 0.3.3 keeps each gradient program between calls (xqlsystems/ddx#164),
plans each CTE an objective reads twice on its own (xqlsystems/ddx#168),
and differentiates attention's masked product as jax.grad does
(xqlsystems/ddx#162). Alternating runs with 0.3.2 on DataFusion:

- GPT training step, SGD: 2.8 s -> 1.2 s (first step 2.0 s)
- GPT training step, AdamW: 3.2 s -> 1.55 s
- attention gradient at 512 tokens: 2.8 s -> 1.1 s (window),
  2.7 s -> 1.3 s (GROUP BY)

Every check against JAX still passes.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NyN7idACeDMh94qrnFMu6h
alxmrs added a commit to xqlsystems/xarray-sql that referenced this pull request Oct 25, 2026
ddxdb 0.3.3 keeps each gradient program between calls (xqlsystems/ddx#164),
plans each CTE an objective reads twice on its own (xqlsystems/ddx#168),
and differentiates attention's masked product as jax.grad does
(xqlsystems/ddx#162). Alternating runs with 0.3.2 on DataFusion:

- GPT training step, SGD: 2.8 s -> 1.2 s (first step 2.0 s)
- GPT training step, AdamW: 3.2 s -> 1.55 s
- attention gradient at 512 tokens: 2.8 s -> 1.1 s (window),
  2.7 s -> 1.3 s (GROUP BY)

Every check against JAX still passes.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NyN7idACeDMh94qrnFMu6h
alxmrs added a commit to xqlsystems/xarray-sql that referenced this pull request Oct 26, 2026
ddxdb 0.3.3 keeps each gradient program between calls (xqlsystems/ddx#164),
plans each CTE an objective reads twice on its own (xqlsystems/ddx#168),
and differentiates attention's masked product as jax.grad does
(xqlsystems/ddx#162). Alternating runs with 0.3.2 on DataFusion:

- GPT training step, SGD: 2.8 s -> 1.2 s (first step 2.0 s)
- GPT training step, AdamW: 3.2 s -> 1.55 s
- attention gradient at 512 tokens: 2.8 s -> 1.1 s (window),
  2.7 s -> 1.3 s (GROUP BY)

Every check against JAX still passes.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NyN7idACeDMh94qrnFMu6h
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grad: attention's gradient is 5–7× slower than JAX's rules written as SQL

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