Ignore unknown bases ('N's) when detecting DB type#739
Merged
yannickwurm merged 1 commit intowurmlab:masterfrom Apr 16, 2024
Merged
Ignore unknown bases ('N's) when detecting DB type#739yannickwurm merged 1 commit intowurmlab:masterfrom
yannickwurm merged 1 commit intowurmlab:masterfrom
Conversation
Some FASTAs might have a lot of unknown bases before meaningful data starts e.g. https://www.ncbi.nlm.nih.gov/nuccore/CM000994.3 Keep scanning the file until we reach meaningful bases to run the determination algorithm against. Closes wurmlab#727
tadast
force-pushed
the
tt/unknown-bases
branch
from
2182828 to
8bdd2fd
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Some FASTAs might have a lot of unknown bases before meaningful data starts e.g. https://www.ncbi.nlm.nih.gov/nuccore/CM000994.3 Keep scanning the file until we reach meaningful bases to run the determination algorithm against.
Closes #727