Automatically detect and convert FASTQ to FASTA in the query#721
Merged
yannickwurm merged 2 commits intowurmlab:masterfrom Jan 25, 2024
Merged
Automatically detect and convert FASTQ to FASTA in the query#721yannickwurm merged 2 commits intowurmlab:masterfrom
yannickwurm merged 2 commits intowurmlab:masterfrom
Conversation
Automatically detect and convert FASTQ in the query
If a user provides a valid FASTQ, it can be converted to FASTA
that can then be consumed by BLAST algorithms. Currently BLAST
errs given a fastq.
This should save users time and effort manually converting FASTQ
to FASTA.
If FASTQ is invalid, no modifications to user query will be made.
As part of this change notifications have also been moved to
the top of the screen, as we may have 2 notifications at once e.g.
FASTQ conversion notification + detected query type notification.
Member
|
This is great - thank you |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
If a user provides a valid FASTQ, it can be converted to FASTA
that can then be consumed by BLAST algorithms. Currently BLAST
errs given a fastq.
This should save users time and effort manually converting FASTQ
to FASTA.
If FASTQ is invalid, no modifications to user query will be made.
As part of this change notifications have also been moved to
the top of the screen, as we may have 2 notifications at once e.g.
FASTQ conversion notification + detected query type notification.