Record makeblastdb errors for debugging purposes#683
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yannickwurm merged 2 commits intowurmlab:masterfrom Sep 29, 2023
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Record makeblastdb errors for debugging purposes#683yannickwurm merged 2 commits intowurmlab:masterfrom
yannickwurm merged 2 commits intowurmlab:masterfrom
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formatting databases seems to be happening in a forked process, so printing the stderr does not seem to have the desired effect to aid the debugging. The shellou utility already has a way to store stderr as a separate file, so save it next to the dababase or database directory that was being formatted when the error occured.
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Formatting databases seems to be happening in a forked process, so printing the stderr does not have the desired effect to aid the debugging. The shell out utility already has a way to store stderr as a separate file, so save it next to the database or the database directory that is being formatted when the error occurrs.