make_arrow

A Rust tool to create an arrow file, containing information about read length, percent identity, and mapping quality from a cram/bam file. The files created by this tool are compatible with NanoPlot and NanoComp.

INSTALLATION

Download a ready-to-use binary for your system from the releases and add it to a directory on your $PATH .
You may have to change the file permissions to execute it with chmod +x make_arrow

USAGE

make_arrow [OPTIONS] <INPUT>

Arguments:
  <INPUT>  cram or bam file (or '-' for stdin)

Options:
  -t, --threads <THREADS>  Number of parallel decompression threads to use [default: 4]
  -o, --output <OUTPUT>    Output file name [default: read_metrics.arrow]
  -h, --help               Print help information
  -V, --version            Print version information

CITATION

If you use this tool, please consider citing our publication.