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Update Rust crate noodles-bgzf to 0.44.0#5476

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renovate/noodles-bgzf-0.x
Nov 23, 2025
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Update Rust crate noodles-bgzf to 0.44.0#5476
renovate[bot] merged 2 commits intodevelopfrom
renovate/noodles-bgzf-0.x

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@renovate renovate bot commented Nov 23, 2025

This PR contains the following updates:

Package Type Update Change
noodles-bgzf workspace.dependencies minor 0.43.0 -> 0.44.0

Release Notes

zaeleus/noodles (noodles-bgzf)

v0.44.0

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📅 Schedule: Branch creation - Between 12:00 AM and 03:59 AM, only on Monday ( * 0-3 * * 1 ) (UTC), Automerge - At any time (no schedule defined).

🚦 Automerge: Enabled.

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@renovate renovate bot added the changelog/chore A trivial change label Nov 23, 2025
@renovate renovate bot enabled auto-merge (squash) November 23, 2025 02:07
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renovate bot commented Nov 23, 2025

⚠️ Artifact update problem

Renovate failed to update an artifact related to this branch. You probably do not want to merge this PR as-is.

♻ Renovate will retry this branch, including artifacts, only when one of the following happens:

  • any of the package files in this branch needs updating, or
  • the branch becomes conflicted, or
  • you click the rebase/retry checkbox if found above, or
  • you rename this PR's title to start with "rebase!" to trigger it manually

The artifact failure details are included below:

File name: Cargo.lock
Command failed: cargo update --config net.git-fetch-with-cli=true --manifest-path Cargo.toml --package [email protected] --precise 0.44.0
    Updating crates.io index
error: failed to select a version for the requirement `noodles-bgzf = "^0.43.0"`
candidate versions found which didn't match: 0.44.0
location searched: crates.io index
required by package `noodles-vcf v0.81.0`
    ... which satisfies dependency `noodles-vcf = "^0.81.0"` of package `bench-vortex v0.1.0 (/tmp/renovate/repos/github/vortex-data/vortex/bench-vortex)`

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fa6e24a 
Signed-off-by: Robert Kruszewski <[email protected]>
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codspeed-hq bot commented Nov 23, 2025 •
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CodSpeed Performance Report

Merging #5476 will degrade performances by 16.71%

Comparing renovate/noodles-bgzf-0.x (fa6e24a) with develop (c467a7a)1

Summary

⚡ 14 improvements
❌ 7 regressions
✅ 1501 untouched
⏩ 70 skipped2

⚠️ Please fix the performance issues or acknowledge them on CodSpeed.

Benchmarks breakdown

Benchmark BASE HEAD Change
⚡ batch[16384] 127.6 µs 113.2 µs +12.78%
⚡ batch[65536] 505.3 µs 447.5 µs +12.92%
⚡ batch[8192] 62.6 µs 55.4 µs +13.07%
⚡ in_place_batch[100352] 406.9 µs 318.2 µs +27.86%
⚡ in_place_batch[1024] 5.5 µs 4.6 µs +19.68%
⚡ in_place_batch[73728] 299.3 µs 234.2 µs +27.8%
⚡ in_place_batch[8192] 33.8 µs 26.6 µs +27.16%
⚡ in_place_batch[86016] 349 µs 273 µs +27.84%
❌ in_place_pipeline[262144] 331 µs 397.4 µs -16.7%
❌ in_place_pipeline[65536] 85.3 µs 101.2 µs -15.76%
❌ pipeline[100352] 132.8 µs 158.6 µs -16.27%
❌ pipeline[262144] 335.1 µs 402.4 µs -16.71%
⚡ pipeline[73728] 118.4 µs 99.5 µs +19%
❌ pipeline_extra_copy[100352] 132.8 µs 158.6 µs -16.26%
⚡ pipeline_extra_copy[16384] 32 µs 26.9 µs +18.97%
❌ pipeline_extra_copy[262144] 335.2 µs 402.4 µs -16.7%
❌ pipeline_extra_copy[65536] 89.3 µs 106.2 µs -15.91%
⚡ pipeline_extra_copy[73728] 118.5 µs 99.6 µs +18.98%
⚡ pipeline_extra_copy[8192] 19.7 µs 17.6 µs +11.96%
⚡ verify_all_methods[1024] 392.1 µs 334.9 µs +17.08%
... ... ... ... ...

ℹ️ Only the first 20 benchmarks are displayed. Go to the app to view all benchmarks.

Footnotes

  1. No successful run was found on develop (4d42c08) during the generation of this report, so c467a7a was used instead as the comparison base. There might be some changes unrelated to this pull request in this report. ↩

  2. 70 benchmarks were skipped, so the baseline results were used instead. If they were deleted from the codebase, click here and archive them to remove them from the performance reports. ↩

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renovate bot commented Nov 23, 2025

Edited/Blocked Notification

Renovate will not automatically rebase this PR, because it does not recognize the last commit author and assumes somebody else may have edited the PR.

You can manually request rebase by checking the rebase/retry box above.

⚠️ Warning: custom changes will be lost.

@robert3005 robert3005 added changelog/chore A trivial change and removed changelog/chore A trivial change labels Nov 23, 2025
@renovate renovate bot merged commit 85ce10b into develop Nov 23, 2025
53 of 82 checks passed
@renovate renovate bot deleted the renovate/noodles-bgzf-0.x branch November 23, 2025 15:41
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codecov bot commented Nov 23, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 85.68%. Comparing base (0e72652) to head (fa6e24a).
⚠️ Report is 7 commits behind head on develop.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

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a10y pushed a commit that referenced this pull request Nov 25, 2025
@renovate @robert3005 @a10y
Update Rust crate noodles-bgzf to 0.44.0 (#5476)
93496bb 
This PR contains the following updates:

| Package | Type | Update | Change |
|---|---|---|---|
| [noodles-bgzf](https://redirect.github.com/zaeleus/noodles) |
workspace.dependencies | minor | `0.43.0` -> `0.44.0` |

---

### Release Notes

<details>
<summary>zaeleus/noodles (noodles-bgzf)</summary>

###
[`v0.44.0`](https://redirect.github.com/zaeleus/noodles/compare/noodles-bgzf-0.43.0...noodles-bgzf-0.44.0)

[Compare
Source](https://redirect.github.com/zaeleus/noodles/compare/noodles-bgzf-0.43.0...noodles-bgzf-0.44.0)

</details>

---

### Configuration

📅 **Schedule**: Branch creation - Between 12:00 AM and 03:59 AM, only on
Monday ( * 0-3 * * 1 ) (UTC), Automerge - At any time (no schedule
defined).

🚦 **Automerge**: Enabled.

♻ **Rebasing**: Whenever PR becomes conflicted, or you tick the
rebase/retry checkbox.

🔕 **Ignore**: Close this PR and you won't be reminded about this update
again.

---

- [ ] <!-- rebase-check -->If you want to rebase/retry this PR, check
this box

---

This PR was generated by [Mend Renovate](https://mend.io/renovate/).
View the [repository job
log](https://developer.mend.io/github/vortex-data/vortex).

<!--renovate-debug:eyJjcmVhdGVkSW5WZXIiOiI0Mi4xNi4xIiwidXBkYXRlZEluVmVyIjoiNDIuMTYuMSIsInRhcmdldEJyYW5jaCI6ImRldmVsb3AiLCJsYWJlbHMiOlsiY2hvcmUiXX0=-->

---------

Signed-off-by: Robert Kruszewski <[email protected]>
Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: Robert Kruszewski <[email protected]>
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