This repository contains Dockerfiles (before 2024) and Apptainer definition files for containers deployed on the high-performance computing cluster at the University of Virginia.
Since 2024 we can build Apptainer containers natively on the cluster, which eliminates the need for Docker.
. ├── app1 │ ├── version1 │ │ ├── Dockerfile │ │ └── README.md │ └── version2 │ └── app1-version2.def └── app2 └── version1 ├── Dockerfile └── README.md
Individual README.md files are used as the Docker Hub repository overview.
To contribute, please visit the wiki for instructions and tips.
| image | description | pulls |
|---|---|---|
| alphafold | Multistage build to reduce image size |  |
| deeplabcut | DeepLabCut with Anipose |  |
| pytorch | PyTorch with popular packages for HPC users |  |
| qiime2 | QIIME2 with proper clean up |  |
| tensorflow | TensorFlow with popular packages for HPC users |  |
R. Sun and K. Siller, HPC Container Management at the University of Virginia, PEARC '24: Practice and Experience in Advanced Research Computing 2024: Human Powered Computing 73, 1 (2024). doi:10.1145/3626203.3670568