To reproduce the bug

1. Clone the repo:
   git clone [email protected]:unekinn/pnpm-ignored-built-dependencies-bug.git

2. Enter the repo:
   cd pnpm-ignored-built-dependencies-bug

3. Run pnpm i

   Lockfile is up to date, resolution step is skipped
   Packages: +7
   +++++++
   Progress: resolved 7, reused 7, downloaded 0, added 7, done
   
   devDependencies:
   + @swc/core 1.11.13
   + esbuild 0.25.1
   + just-pnpm 1.0.2
   
   Done in 275ms using pnpm v10.7.0
   

4. Run pnpm rebuild

   node_modules/.pnpm/[email protected]/node_modules/just-pnpm: Running preinstall script, done in 131ms
   node_modules/.pnpm/[email protected]/node_modules/just-pnpm: Running postinstall script, done in 111ms
   

5. Run pnpm i again

   Lockfile is up to date, resolution step is skipped
   Already up to date
   
   ╭ Warning ───────────────────────────────────────────────────────────────────────────────────╮
   │                                                                                            │
   │   Ignored build scripts: @swc/core, esbuild.                                               │
   │   Run "pnpm approve-builds" to pick which dependencies should be allowed to run scripts.   │
   │                                                                                            │
   ╰────────────────────────────────────────────────────────────────────────────────────────────╯
   
   Done in 241ms using pnpm v10.7.0
   

How the example was made

1. pnpm init
2. corepack use pnpm@latest
3. pnpm add -D just-pnpm esbuild @swc/core
4. pnpm approve-builds
5. Select just-pnpm for approval