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A Molecular Topography MultiToolkit designed to simplify and streamline the detection, analysis, and characterization of protein pockets, cavities, channels, and binding sites.

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TopoMT

A Python library for the hierarchical analysis of molecular surface topography

MolSysSuite: Scientific Component MolSysSuite policy Python 3.11 | 3.12 | 3.13 License Tests

Molecular Topography Multi Toolkit is a Python library for the detection, representation and analysis of molecular surface topography, including pockets, cavities, channels, interfaces, grooves and protrusions.

Original third-party engines are optional. See the supported engines and installation requirements for Python library, executable, web-service and native routes.

Development and distribution status

Start with the developer guide for onboarding, current work and transferring development to another machine.

For questions and scientific-resource conversations, start with TopoMT Discussions. Contributors maintaining that area should read the category, label and follow-up instructions.

Topography BenchLab is the dedicated system study and comparison laboratory, starting with synthetic geometries and a separate planned collection for real molecular systems.

Metadata and configured source/installed matrices target Python 3.11–3.14; routine workspace development uses molsyssuite@uibcdf_3.14. Qualification/admission stays tracked in #16. Distribution controls and public receiving evidence remain partial in #78. See source installation and the optional reviewed environment tools; no public release or complete installed compatibility is inferred from this configuration.

About

A Molecular Topography MultiToolkit designed to simplify and streamline the detection, analysis, and characterization of protein pockets, cavities, channels, and binding sites.

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