Skip to content

Added BFVD as a foldseek database#344

Merged
milot-mirdita merged 6 commits into
steineggerlab:masterfrom
rachelse:bfvd
Sep 10, 2024
Merged

Added BFVD as a foldseek database#344
milot-mirdita merged 6 commits into
steineggerlab:masterfrom
rachelse:bfvd

Conversation

@rachelse

@rachelse rachelse commented Sep 6, 2024

Copy link
Copy Markdown
Contributor

No description provided.

Comment thread data/structdatabases.sh Outdated
Comment thread src/FoldseekBase.cpp Outdated
{
"BFVD",
"BFVD Big fantastic virus database (predicted viral protein structures based on the viral sequence representatives of the UniRef30 clusters",
"Kim et al. BFVD - a large repository of predicted viral protein structures. bioRxiv, (2024)", // TODO

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Maybe do Kim R for this and Kim W for multimer?

Copy link
Copy Markdown
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Is this fine?

Comment thread src/FoldseekBase.cpp Outdated
"BFVD",
"BFVD Big fantastic virus database (predicted viral protein structures based on the viral sequence representatives of the UniRef30 clusters",
"Kim et al. BFVD - a large repository of predicted viral protein structures. bioRxiv, (2024)", // TODO
"https://bfvd.steineggerlab.workers.dev/ProstT5",

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

ProstT5?

Copy link
Copy Markdown
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

oh no

@milot-mirdita milot-mirdita left a comment

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Left some comments

@milot-mirdita milot-mirdita merged commit 52029c0 into steineggerlab:master Sep 10, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants