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chore(deps): update ci and devdependencies#522

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Jan 29, 2025
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chore(deps): update ci and devdependencies#522
LecrisUT merged 3 commits intodevelopfrom
renovate/ci-and-devdependencies

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@renovate renovate bot commented Aug 5, 2024 •
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This PR contains the following updates:

Package Type Update Change
astral-sh/ruff-pre-commit repository minor v0.5.6 -> v0.9.3
codespell-project/codespell repository minor v2.3.0 -> v2.4.0
executablebooks/mdformat repository patch 0.7.17 -> 0.7.21
lukka/run-cmake action minor v10.5 -> v10.8
lukka/run-cmake action minor v10.7 -> v10.8
pre-commit/mirrors-mypy repository minor v1.11.1 -> v1.14.1
pre-commit/pre-commit-hooks repository major v4.6.0 -> v5.0.0
pypa/cibuildwheel action minor v2.19 -> v2.22
python-jsonschema/check-jsonschema repository minor 0.29.1 -> 0.31.0

Note: The pre-commit manager in Renovate is not supported by the pre-commit maintainers or community. Please do not report any problems there, instead create a Discussion in the Renovate repository if you have any questions.

Release Notes

astral-sh/ruff-pre-commit (astral-sh/ruff-pre-commit)

v0.9.3

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See: https://github.com/astral-sh/ruff/releases/tag/0.9.3

v0.9.2

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See: https://github.com/astral-sh/ruff/releases/tag/0.9.2

v0.9.1

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See: https://github.com/astral-sh/ruff/releases/tag/0.9.1

v0.9.0

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See: https://github.com/astral-sh/ruff/releases/tag/0.9.0

v0.8.6

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See: https://github.com/astral-sh/ruff/releases/tag/0.8.6

v0.8.5

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See: https://github.com/astral-sh/ruff/releases/tag/0.8.5

v0.8.4

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See: https://github.com/astral-sh/ruff/releases/tag/0.8.4

v0.8.3

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See: https://github.com/astral-sh/ruff/releases/tag/0.8.3

v0.8.2

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See: https://github.com/astral-sh/ruff/releases/tag/0.8.2

v0.8.1

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See: https://github.com/astral-sh/ruff/releases/tag/0.8.1

v0.8.0

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See: https://github.com/astral-sh/ruff/releases/tag/0.8.0

v0.7.4

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See: https://github.com/astral-sh/ruff/releases/tag/0.7.4

v0.7.3

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See: https://github.com/astral-sh/ruff/releases/tag/0.7.3

v0.7.2

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See: https://github.com/astral-sh/ruff/releases/tag/0.7.2

v0.7.1

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See: https://github.com/astral-sh/ruff/releases/tag/0.7.1

v0.7.0

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See: https://github.com/astral-sh/ruff/releases/tag/0.7.0

v0.6.9

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.9

v0.6.8

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.8

v0.6.7

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.7

v0.6.6

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.6

v0.6.5

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.5

v0.6.4

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.4

v0.6.3

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.3

v0.6.2

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.2

v0.6.1

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.1

v0.6.0

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See: https://github.com/astral-sh/ruff/releases/tag/0.6.0

v0.5.7

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See: https://github.com/astral-sh/ruff/releases/tag/0.5.7

codespell-project/codespell (codespell-project/codespell)

v2.4.0

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What's Changed
New Contributors

Full Changelog: codespell-project/codespell@v2.3.0...v2.4.0

executablebooks/mdformat (executablebooks/mdformat)

v0.7.21

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v0.7.20

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v0.7.19

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v0.7.18

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lukka/run-cmake (lukka/run-cmake)

v10.8: [email protected]

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Changes:

  • Fix the matcher for the MSVC cl.exe compiler to account for the column (if present) of the error/warning location.

Note: to keep your workflow up to date with bug and security fixes, just use v10 branch to stay on the most recent v10.x version of this action, e.g., uses: lukka/run-cmake@v10

v10.7: [email protected]

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Changes:

  • Update the action to require node v20, since v16 is out of support. If any problem occurs, please use [email protected]and create an issue.
  • Update dependencies to most recent ones: all libs and @actions packages update to most recent versions, along with all other dependencies.
  • Drop usage of gulp.
  • Update docs.

Note: to keep your workflow up to date with bug and security fixes, just use v10 branch to stay on the most recent v10.x version of this action, e.g., uses: lukka/run-cmake@v10

v10.6: [email protected]

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Changes:

  • Since May 2023 the GitHub Runners for Windows contain Visual Studio 2022 17.6, whose VS Developer Command Prompt (or Developer Powershell) defines the VCPKG_ROOT value. The change is that the run-cmake action avoids changing the value of VCPKG_ROOT when setting up the MSVC environment.

Note: to keep your workflow up to date with bug and security fixes, just use v10 branch to stay on the most recent v10.x version of this action, e.g., uses: lukka/run-cmake@v10

pre-commit/mirrors-mypy (pre-commit/mirrors-mypy)

v1.14.1

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v1.14.0

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v1.13.0

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v1.12.1

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v1.12.0

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v1.11.2

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pre-commit/pre-commit-hooks (pre-commit/pre-commit-hooks)

v5.0.0: pre-commit-hooks v5.0.0

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Features
Fixes
Migrating
  • pre-commit-hooks now requires pre-commit>=3.2.0.
  • use non-deprecated names for stages.
pypa/cibuildwheel (pypa/cibuildwheel)

v2.22

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v2.21

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v2.20

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python-jsonschema/check-jsonschema (python-jsonschema/check-jsonschema)

v0.31.0

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  • Update vendored schemas: azure-pipelines, bamboo-spec, buildkite, circle-ci,
    dependabot, gitlab-ci, mergify, readthedocs, renovate, taskfile (2025-01-07)

  • Drop support for Python 3.8

  • Rename --format-regex to --regex-variant and convert
    --format-regex to a deprecated alias.
    It will be removed in a future release.

  • Regular expression interpretation in "pattern", "patternProperties", and
    "format": "regex" usages now uses unicode-mode JS regular expressions by
    default. (:issue:353)

    • Use --regex-variant nonunicode to get non-unicode JS regular
      expressions, the default behavior from previous versions.
    • Custom validators may be impacted by the new regular expression
      features. Validators are now always modified with the jsonschema
      library's extend() API to control the pattern and
      patternProperties keywords.

v0.30.0

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  • Update vendored schemas: azure-pipelines, bitbucket-pipelines, buildkite,
    circle-ci, cloudbuild, dependabot, github-workflows, gitlab-ci, mergify,
    readthedocs, renovate, taskfile, woodpecker-ci (2024-11-29)
  • Fix caching behavior to always use URL hashes as cache keys. This fixes a
    cache confusion bug in which the wrong schema could be retrieved from the
    cache. This resolves :cve:2024-53848. Thanks :user:sethmlarson for reporting!
  • Deprecate the --cache-filename flag. It no longer has any effect and will
    be removed in a future release.

v0.29.4

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  • Update vendored schemas: azure-pipelines, github-workflows, gitlab-ci,
    mergify, renovate (2024-10-06)
  • Fix the renovate hook to allow for .renovaterc.json5 as well. Thanks
    :user:tpansino! (:pr:491)
  • Add Mergify schema and pre-commit hook. Thanks :user:hofbi and :user:jd
    for the issue and feedback! (:issue:487)

v0.29.3

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  • Update vendored schemas: buildkite, circle-ci, dependabot, gitlab-ci,
    renovate, taskfile, woodpecker-ci (2024-09-29)

v0.29.2

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  • Update vendored schemas: buildkite, github-workflows, gitlab-ci, renovate,
    woodpecker-ci (2024-08-22)
  • Convert from setup.cfg to pyproject.toml for python package metadata

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@renovate renovate bot force-pushed the renovate/ci-and-devdependencies branch 4 times, most recently from 2be5340 to 493ae23 Compare August 12, 2024 22:59
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lan496 commented Jan 19, 2025

@LecrisUT The coverage CIs have started to break, and I think it does not directly relate to this PR. Do you know what is happening?
https://github.com/spglib/spglib/actions/runs/12854022155/job/35837946344?pr=522

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LecrisUT commented Jan 19, 2025

Thanks for looking into this PR. I was a bit wary of lcov-action because it uses a docker container approach and it seems we have 2 issues here:

  • lcov seems to recently complain if a pattern is not used
  • in the python run, it seems to look for numpy related headers which are never available because we are using build-isolation

Fixing these will be tricky I think, but instead I am considering one of the 2 options

  • codecov: remove the lcov-action and rely on codecov to extract all coverage data. We would need to migrate all exclusion flags to codecov.yaml 1. One downside of this I can think of right now is that it is harder to replicate locally and get a local report.
  • gcovr: this would be ci: Switch coverage to gcovr #403. This gives a bit more control over the exclusion paths and is more replicable locally. I don't remember what the issue was with that one, but it's worth re-exploring as the underlying tools evolve.

We could go with codecov approach for a quick solution for now and then see if #403 is still desirable.

I was looking at the format commit and I am quite surprised at the suggestion in the pre-commit because the original one is actually more correct. I'll open an issue upstream to see what's going on

Footnotes

  1. https://docs.codecov.com/docs/ignoring-paths ↩

@renovate renovate bot force-pushed the renovate/ci-and-devdependencies branch from 959e74e to e1b4937 Compare January 20, 2025 18:16
@renovate renovate bot force-pushed the renovate/ci-and-devdependencies branch from e1b4937 to 9133429 Compare January 24, 2025 07:09
@LecrisUT LecrisUT mentioned this pull request Jan 29, 2025
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LecrisUT commented Jan 29, 2025

I had time to debug the mdformat change and it's related to hukkin/mdformat#112, and it seems that they keep the brackets un-escapped if they are valid, e.g. like how GH accepts [this] without escaping. They seem fine, so I guess we keep them

@LecrisUT
Simplify lukka/run-cmake
12e6f39 
- outdated comment removed
- move back to v10 tracking
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renovate bot commented Jan 29, 2025

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codecov bot commented Jan 29, 2025 •
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 77.20%. Comparing base (e1d4fa1) to head (12e6f39).
Report is 59 commits behind head on develop.

Additional details and impacted files 
@@           Coverage Diff            @@
##           develop     #522   +/-   ##
========================================
  Coverage    77.20%   77.20%           
========================================
  Files           26       26           
  Lines         8082     8082           
  Branches      1697     1690    -7     
========================================
  Hits          6240     6240           
  Misses        1347     1347           
  Partials       495      495
Flag Coverage Δ
c_api 68.68% <ø> (ø)
fortran_api 50.70% <ø> (ø)
python_api 73.24% <ø> (ø)
unit_tests 11.67% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

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LecrisUT commented Jan 29, 2025 •
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So... cibuildwheel runners for linux arm running with emulations seem to be broken. Let's see if #547 fixes it. (yeah it did)

@LecrisUT LecrisUT merged commit 12e6f39 into develop Jan 29, 2025
@lan496 lan496 deleted the renovate/ci-and-devdependencies branch January 30, 2025 02:37
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@lan496 @LecrisUT