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Add bertini package#944

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tgamblin merged 3 commits intospack:developfrom
adamjstewart:features/bertini
Jun 16, 2016
Merged

Add bertini package#944
tgamblin merged 3 commits intospack:developfrom
adamjstewart:features/bertini

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@adamjstewart
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Also add missing dependency. Flex would not build for me without bison. It complained about not being able to find yacc.

Also add missing dependency. Flex would not build for me without bison.
It complained about not being able to find `yacc`.
@adamjstewart
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Looks like somebody else added the bison dependency to flex since I started this PR. Changes removed to prevent collision. @tgamblin should be good to go now.

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@tgamblin: ping

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@tgamblin: ping ping

@tgamblin tgamblin merged commit 9ee6cbf into spack:develop Jun 16, 2016
@adamjstewart adamjstewart deleted the features/bertini branch June 17, 2016 13:27
olupton pushed a commit to olupton/spack that referenced this pull request Feb 7, 2022
olupton pushed a commit to olupton/spack that referenced this pull request Feb 7, 2022
* Update bbp-packages.yaml

Adding my currentscape module to bbp-packages.

* Update modules.yaml

Adding my currentscape package to the whitelist.

* Create package.py

Added my currentscape package.

* Update var/spack/repos/builtin/packages/py-currentscape/package.py

Co-authored-by: Matthias Wolf <[email protected]>

* Update var/spack/repos/builtin/packages/py-currentscape/package.py

Co-authored-by: Matthias Wolf <[email protected]>

* Update var/spack/repos/builtin/packages/py-currentscape/package.py

Co-authored-by: Matthias Wolf <[email protected]>

* Update package.py

Modified the version. Is it better now?

* update bglibpy to 4.4.6 (spack#937)

* Update package.py

Changing tag to match the one from source on gerrit.

* Bglibpy 4.4.10 (spack#938)

* update bglibpy to 4.4.6

* updated to bglpy 4.4.10

v 4.4.10 does not have the pandas, pyrsistent or the bluepy-configfile dependencies

* Updates Libsonata package to include readers improvements (spack#940)

* update glm to 0.9.9.3 (spack#943)

* Bump neurodamus for most recent patches (spack#942)

Bump neurodamus-py 2.0.0 to 2.0.2:
 - Fixing replay to work with multiple populations
 - Ensure data dir when skipping model build
 - Fix skipping synapse creation when weight is 0 (BBPBGLIB-673)
 - Fix deadlock when an exception is thrown from NEURON (BBPBGLIB-678)
 - Logging colors only for tty

Bump neurodamus-core 3.0.0 to 3.0.1:
 - Avoid getting nilSecRef from objects (HPCTM-1381)

* Update py-sonata-network-reduction dependencies: [email protected], [email protected] (spack#930)

* Update bbp-packages.yaml

Updated currentscape version.

* Update package.py

Updated version & tag.

* Brion and Brayns are dependent on GLM (spack#944)

* Steps updates (spack#941)

* gmsh: add version 4.6.0
* omega-h: new version 9.32.5.dev3
* steps: new test requirements

* libsonata-report: Improves initialization performance (spack#945)

* adapt brion test to a new python module name (spack#946)

* Adding nvidia-hpc-sdk based on upstream PR (spack#935)

* New compiler: nvhpc (NVIDIA HPC SDK) (spack#19294)
* Add nvhpc compiler definition: "spack compiler add" will now look
  for instances of the NVIDIA HPC SDK compiler executables
  (nvc, nvc++, nvfortran) in supplied paths
* Add the nvhpc package which installs the nvhpc compiler
* Add testing for nvhpc detection and C++-standard/pic flags

Based on spack#19294

* Add CUDA@11 required for latest NVIDIA-HPC-SDK
* Fix legacy apis : setup_environment to setup_run_environment

* NEURON and CoreNEURON should use legacy units for BBP/HBP deployment (spack#947)

* Update bbp-packages.yaml

Adding my currentscape module to bbp-packages.

* Update modules.yaml

Adding my currentscape package to the whitelist.

* Create package.py

Added my currentscape package.

* Update var/spack/repos/builtin/packages/py-currentscape/package.py

Co-authored-by: Matthias Wolf <[email protected]>

* Update var/spack/repos/builtin/packages/py-currentscape/package.py

Co-authored-by: Matthias Wolf <[email protected]>

* Update var/spack/repos/builtin/packages/py-currentscape/package.py

Co-authored-by: Matthias Wolf <[email protected]>

* Update package.py

Modified the version. Is it better now?

* Update package.py

Changing tag to match the one from source on gerrit.

* Update bbp-packages.yaml

Updated currentscape version.

* Update package.py

Updated version & tag.

Co-authored-by: Matthias Wolf <[email protected]>
Co-authored-by: anilbey <[email protected]>
Co-authored-by: Sergio <[email protected]>
Co-authored-by: ppodhajski <[email protected]>
Co-authored-by: Fernando Pereira <[email protected]>
Co-authored-by: asanin-epfl <[email protected]>
Co-authored-by: Nadir Román Guerrero <[email protected]>
Co-authored-by: Tristan Carel <[email protected]>
Co-authored-by: Pramod Kumbhar <[email protected]>
Co-authored-by: Jaquier Aurélien Tristan <[email protected]>
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2 participants