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py-tensorflow: fix zlib#33349

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adamjstewart merged 2 commits intospack:developfrom
haampie:fix/py-tensorflow
Oct 16, 2022
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py-tensorflow: fix zlib#33349
adamjstewart merged 2 commits intospack:developfrom
haampie:fix/py-tensorflow

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@haampie haampie commented Oct 15, 2022

tensorflow uses bazel, bazel vendors all deps and has urls pointing to a non-existing zlib url, since the new release of zlib of yesterday.

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haampie commented Oct 15, 2022

@spackbot fix style

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spackbot-app bot commented Oct 15, 2022

Let me see if I can fix that for you!

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spackbot-app bot commented Oct 15, 2022

I was able to run spack style --fix for you!

spack style --fix
==> Running style checks on spack
  selected: isort, mypy, black, flake8
==> Modified files
  var/spack/repos/builtin/packages/py-tensorflow-metadata/package.py
  var/spack/repos/builtin/packages/py-tensorflow/package.py
==> Running isort checks
  isort checks were clean
==> Running mypy checks
Success: no issues found in 556 source files
  mypy checks were clean
==> Running black checks
reformatted var/spack/repos/builtin/packages/py-tensorflow-metadata/package.py
reformatted var/spack/repos/builtin/packages/py-tensorflow/package.py
All done! ✨ 🍰 ✨
2 files reformatted.
  black checks were clean
==> Running flake8 checks
  flake8 checks were clean
==> spack style checks were clean
Keep in mind that I cannot fix your flake8 or mypy errors, so if you have any you'll need to fix them and update the pull request. If I was able to push to your branch, if you make further changes you will need to pull from your updated branch before pushing again.

I've updated the branch with isort fixes.

@adamjstewart adamjstewart self-assigned this Oct 15, 2022
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Thanks for the fix! It's amazing that a project would prefer hardcoded URLs over simply using system installs of a package. Hopefully someday we can convince the devs to allow external deps instead of vendored deps.

I imagine all historical versions would also need a patch like this to build? I noticed a lot of similar failures when creating the ML pipeline, but I "solved" those by adding newer versions of packages like TF metadata so that the pipeline no longer tried to build old TF. I certainly won't require you to add patches for older versions, and I don't think any of us have the bandwidth to maintain ancient TF, but at least we know the fix if someone does need an old version.

@adamjstewart adamjstewart enabled auto-merge (squash) October 15, 2022 15:14
@adamjstewart adamjstewart merged commit f7f11fc into spack:develop Oct 16, 2022
luke-dt added a commit to dantaslab/spack that referenced this pull request Oct 17, 2022
* py-execnet: 1.9.0 (spack#33282)

* py-execnet: 1.9.0

* bounds

* add version 1.12.3 of parallel-netcdf (spack#33286)

* Add checksum for py-psutil 5.9.2 (spack#33139)

* gitlab ci: Print better information about broken specs (spack#33124)

When a pipeline generation job is automatically failed because it
generated jobs for specs known to be broken on develop, print better
information about the broken specs that were encountered.  Include
at a minimum the hash and the url of the job whose failure caused it
to be put on the broken specs list in the first place.

* meson: remove slash in path (spack#33292)

* Add checksum for py-gitpython 3.1.27 (spack#33285)

* Add checksum for py-gitpython 3.1.27

* Update package.py

* Update var/spack/repos/builtin/packages/py-gitpython/package.py

Co-authored-by: Adam J. Stewart <[email protected]>

Co-authored-by: Adam J. Stewart <[email protected]>

* UPC++/GASNet-EX 2022.9.0 update (spack#33277)

* gasnet: Add new release hash
* upcxx: Add new release hash
* gasnet: misc updates
* upcxx: misc updates

* Fix [email protected] sha (spack#33307)

* [email protected] onwards: set prefix properly (spack#33257)

* hip-set-prefix-rocm5.2.0-onwards

* Update var/spack/repos/builtin/packages/hip/package.py

Update description

Co-authored-by: Satish Balay <[email protected]>

* petsc,py-petsc4py,slepc,py-slepc4py: add version 3.18.0 (spack#32938)

* petsc,py-petsc4py,slepc,py-slepc4py: add version 3.18.0

* workaround for dealii build failure [with petsc version check]

* pism: add compatibility fix to for [email protected]

* add in hipsolver dependency

* py-libensemble: updating package for v0.9.3 (spack#33298)

* commit updating py-libensemble package for 0.9.3

* removed commented-out lines

* Add checksum for py-oauthlib 3.2.1 (spack#33201)

* Add checksum for py-oauthlib 3.2.1

* Update package.py

* [@spackbot] updating style on behalf of iarspider

* Update package.py

* Update package.py

Co-authored-by: iarspider <[email protected]>

* ninja: New version 1.11.1 (spack#33215)

* seacas: update to latest release (spack#33330)

Add checksum for latest tag/release

* gptl: new version 8.1.1; use the correct mpi fortran compiler (spack#33235)

* gptl: new version 8.1.1; use the correct `mpifc`
* add `F90` and `$F77`

* glib: add 2.74.0 and 2.72.4 (spack#33332)

* depfile: update docs (spack#33279)

* rocksdb: add 7.7.3 (spack#33341)

* Add checksum for py-seaborn 0.12.0 (spack#33145)

* Add checksum for py-seaborn 0.12.0

* Update package.py

* Update package.py

* [@spackbot] updating style on behalf of iarspider

* Update package.py

Co-authored-by: iarspider <[email protected]>

* CI: allow multiple matches to combine tags (spack#32290)

Currently "spack ci generate" chooses the first matching entry in
gitlab-ci:mappings to fill attributes for a generated build-job,
requiring that the entire configuration matrix is listed out
explicitly. This unfortunately causes significant problems in
environments with large configuration spaces, for example the
environment in spack#31598 (spack.yaml) supports 5 operating systems,
3 architectures and 130 packages with explicit size requirements,
resulting in 1300 lines of configuration YAML.

This patch adds a configuraiton option to the gitlab-ci schema called
"match_behavior"; when it is set to "merge", all matching entries
are applied in order to the final build-job, allowing a few entries
to cover an entire matrix of configurations.

The default for "match_behavior" is "first", which behaves as before
this commit (only the runner attributes of the first match are used).

In addition, match entries may now include a "remove-attributes"
configuration, which allows matches to remove tags that have been
aggregated by prior matches. This only makes sense to use with
"match_behavior:merge". You can combine "runner-attributes" with
"remove-attributes" to effectively override prior tags.

* meson: update OneAPI compiler support patch (spack#33293)

* py-tensorflow: fix zlib (spack#33349)

* py-tensorflow: fix zlib

* [@spackbot] updating style on behalf of haampie

Co-authored-by: haampie <[email protected]>

* py-meson-python: add new versions (spack#33294)

* tasmanian: disable openmp by default (spack#33345)

* octopus: upgrade to 12.1 (spack#33343)

* py-sphinx: add v5.3 and v5.2 (spack#33356)

* py-setuptools: add v65.5.0 (spack#33353)

* libblastrampoline: Add versions 5.1.1, 5.2.0 (spack#33352)

* nextflow: add v20.10.0 (spack#33354)

* sdl2: add v2.0.22 and v2.24.1 (spack#33351)

* mariadb-c-client: add 3.3.2, 3.2.7, 3.1.18, 3.0.10 (spack#33335)

* py-tensorflow-hub: zlib, again. (spack#33359)

* Add checksum for py-sniffio 1.3.0 (spack#32975)

* py-numpy: add v1.23.4 (spack#33260)

* py-jupyterlab-pygments: install from wheel to avoid cyclic dependency (spack#33278)

* py-jupyterlab-pygments: avoid cyclic dependency

* Fix style

* Update package.py

* Update package.py

* [@spackbot] updating style on behalf of iarspider

* Update package.py

* Flake-8

* fix

Co-authored-by: iarspider <[email protected]>

* installer.py: show timers for binary install (spack#33305)

Print a message of the form
```
Fetch mm:ss.  Build: mm:ss.  Total: mm:ss
```
when installing from buildcache. 

Previously this only happened for source builds.

* Add checksum for py-astroid 2.12.7, py-astroid 2.12.10, py-setuptools 62.6.0, py-wrapt 1.14.1, py-pylint 2.15.0 (spack#32976)

* Add checksum for py-astroid 2.12.7, py-setuptools 62.6.0

* Also add checksum for py-wrapt

* Update package.py

* Update package.py (spack#57)

* Update package.py

* Update package.py

* Update package.py

* gitlab ci: Do not force protected build jobs to run on aws runners (spack#33314)

* installer.py: fix/test get_deptypes (spack#33363)

Fixing an oversight in spack#32537

`get_deptypes` should depend on new `package/dependencies_cache_only`
props.

* Add checksum for py-grpcio-tools 1.48.1 (spack#33358)

* Add checksum for py-prompt-toolkit 3.0.31 (spack#33362)

Co-authored-by: Harmen Stoppels <[email protected]>
Co-authored-by: Jim Edwards <[email protected]>
Co-authored-by: iarspider <[email protected]>
Co-authored-by: Scott Wittenburg <[email protected]>
Co-authored-by: Adam J. Stewart <[email protected]>
Co-authored-by: Dan Bonachea <[email protected]>
Co-authored-by: Auriane R <[email protected]>
Co-authored-by: eugeneswalker <[email protected]>
Co-authored-by: Satish Balay <[email protected]>
Co-authored-by: John-Luke Navarro <[email protected]>
Co-authored-by: iarspider <[email protected]>
Co-authored-by: Erik Schnetter <[email protected]>
Co-authored-by: Greg Sjaardema <[email protected]>
Co-authored-by: WuK <[email protected]>
Co-authored-by: Michael Kuhn <[email protected]>
Co-authored-by: Jonathon Anderson <[email protected]>
Co-authored-by: haampie <[email protected]>
Co-authored-by: Miroslav Stoyanov <[email protected]>
Co-authored-by: Hans Fangohr <[email protected]>
Co-authored-by: Mosè Giordano <[email protected]>
Co-authored-by: Diego Alvarez <[email protected]>
Co-authored-by: Wouter Deconinck <[email protected]>
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