…(py-dendropy, py-phylophlan, py-pkgconfig) (#32936)

* added metaphlan v4, cleaned up phylophlan

* added iqtree2

* fixed phylophlan, builds now

* changed config.yaml to default

* fixed style

* py-jsonschema: add 4.16.0 and new package py-hatch-fancy-pypi-readme (#32929)

* acfl: add v22.1 (#32915)

Co-authored-by: Annop Wongwathanarat <[email protected]>

* Fixup errors introduced by Clingo Pr: (#32905)

* re2c depends on cmake on Windows
* Winbison properly added to bootstrap package search list

* Set CMAKE_HIP_ARCHITECTURES with the value of amdgpu_target (#32901)

* libtiff: default to +zlib+jpeg (#32945)

* octave: add version 7.2.0 (#32943)

* simgrid new releases (#32920)

* [rocksdb] Added rtti variant (#32918)

* rvs binary path updated for 5.2 rocm release (#32892)

* Add checksum for py-pytest-runner 6.0.0 (#32957)

* py-einops: add v0.5.0 (#32959)

* Replace repo with the NVIDIA one (#32951)

* Add checksum for py-tomli 2.0.1 (#32949)

* QMCPACK: add @3.15.0 (#32931)

* Tidied up configure arguments to use special spack autotools features. (#32930)

* casper: old domain fell off, adding github repo (#32928)

* unifyfs: pin mercury version; add boost variant (#32911)

Mercury has a new version (v2.2) releasing soon that UnifyFS does not build with and hasn't been tested with. This pins UnifyFS to the last version of Mercury used/tested.

Add a variant to avoid building/using boost

Append -std=gnu99 to cflags if building with gcc@4. Needed for mochi-margo to compile

* trilinos: constrain superlu-dist version (#32889)

* trilinos: constrain superlu-dist version for 13.x
* syntax

* FEniCSx: Updates for 0.5.1 (#32665)

* Updates for DOLFINx 0.5.1 and associated packages
* xtensor needed on anything less than main
* Switch back to Python 3.7 minimum.
* Might be good to point out in our README how to fix Python version?
* Fix basix, xtensor dep
* Add numba feature
* Fix checksum
* Make slepc optional

Co-authored-by: Tamara Dahlgren <[email protected]>

* simgrid: add variant and remove flag (#32797)

* simgrid: remove std c++11 flag
* simgrid: add msg variant

* Axom: bring in changes from axom repo (#32643)

* bring in changes from axom repo

Co-authored-by: white238 <[email protected]>
Co-authored-by: Tamara Dahlgren <[email protected]>

* Add checksum for py-pyparsing 3.0.9 (#32952)

* rdma-core: fix syntax for external discoverability (#32962)

* Add checksum for py-flatbuffers 2.0.7 (#32955)

* amrex: add v22.10 (#32966)

* Remove CMakePackage.define alias from most packages (#32950)

* Bug fix for `ca-certificates-mozilla/package.py` to enable `spack install --source` (#32953)

* made suggested changes to iqtree2, py-dendropy, py-metaphlan, and py-pkgconfig. Poetry install still broken

* reverted py-pkgconfig deps to poetry-core

* made iqtree2 less dedundant, changes to py-dendropy and py-pkgconfig deps

Co-authored-by: Manuela Kuhn <[email protected]>
Co-authored-by: Annop Wongwathanarat <[email protected]>
Co-authored-by: Annop Wongwathanarat <[email protected]>
Co-authored-by: John W. Parent <[email protected]>
Co-authored-by: Auriane R <[email protected]>
Co-authored-by: Adam J. Stewart <[email protected]>
Co-authored-by: Kai Torben Ohlhus <[email protected]>
Co-authored-by: Vinícius <[email protected]>
Co-authored-by: Matthieu Dorier <[email protected]>
Co-authored-by: renjithravindrankannath <[email protected]>
Co-authored-by: iarspider <[email protected]>
Co-authored-by: Paul R. C. Kent <[email protected]>
Co-authored-by: Brian Van Essen <[email protected]>
Co-authored-by: snehring <[email protected]>
Co-authored-by: Cameron Stanavige <[email protected]>
Co-authored-by: Cody Balos <[email protected]>
Co-authored-by: Jack S. Hale <[email protected]>
Co-authored-by: Tamara Dahlgren <[email protected]>
Co-authored-by: Lucas Nesi <[email protected]>
Co-authored-by: Chris White <[email protected]>
Co-authored-by: white238 <[email protected]>
Co-authored-by: Martin Pokorny <[email protected]>
Co-authored-by: Weiqun Zhang <[email protected]>
Co-authored-by: Massimiliano Culpo <[email protected]>
Co-authored-by: Dom Heinzeller <[email protected]>