Installation issue: blast-plus #9646
Description
Steps to reproduce the issue
$ spack install blast-plus %[email protected]
==> Error: ProcessError: Command exited with status 1:
'/tmp/swadm/spack-stage/spack-stage-to6lRR/ncbi-blast-2.7.1+-src/c++/configure' '--prefix=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/blast-plus-2.7.1-q37xd35h' '--with-bin-release' '--without-debug' '--with-mt' '--with-64' '--without-boost' '--with-dll' '--without-static' '--without-static-exe' '--with-jpeg=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/libjpeg-turbo-1.5.90-zxzz6oip' '--with-png=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/libpng-1.6.34-yln6jrur' '--with-freetype=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/freetype-2.9.1-somhyhqs' '--without-hdf5' '--with-z=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/zlib-1.2.11-zknfwanb' '--with-bz2=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/bzip2-1.0.6-hzpdm3hw' '--with-lzo=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/lzo-2.09-74jpbr5o' '--with-gnutls=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/gnutls-3.5.13-ylsgp5dz' '--with-openssl=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/openssl-1.0.2o-sh6zpq5n' '--with-pcre=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/pcre-8.42-gzs4wakw' '--with-python=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/python-2.7.15-2azrjn6j' '--with-perl=/cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/perl-5.26.2-6it6cpil'
1 error found in build log:
411 checking for libpng in /cfs/software/spack/linux-centos7-x86_64/gcc-7.3.0/libpng-1.6.34-yln6jrur... yes
412 checking for libtiff... no
413 checking for libgif... no
414 checking for libungif... no
415 checking for libXpm... no
416 checking for freetype-config... no
>> 417 configure: error: --with-freetype explicitly specified, but no usable version found.
As you can see, freetype is already installed and correctly listed in prefix=/cfs... above.
Platform and user environment
Please report your OS here:
$ uname -a
Linux build02.hpc.zhaw.ch 3.10.0-862.14.4.el7.x86_64 #1 SMP Wed Sep 26 15:12:11 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
$ lsb_release -d
Description: CentOS Linux release 7.5.1804 (Core)
and, if relevant, post or attach:
packages.yamlcompilers.yaml
to the issue
Additional information
[swadm@build02 ~]$ spack spec --install-status freetype
Input spec
--------------------------------
freetype
Concretized
--------------------------------
[+] [email protected]%[email protected] arch=linux-centos7-x86_64
[+] ^[email protected]%[email protected]+shared arch=linux-centos7-x86_64
[+] ^[email protected]%[email protected] arch=linux-centos7-x86_64
[+] ^[email protected]%[email protected] arch=linux-centos7-x86_64
[+] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-centos7-x86_64
[+] ^[email protected]%[email protected] arch=linux-centos7-x86_64 If your build didn't make it past the configure stage, Spack as also commands to parse
logs and report error and warning messages:
[swadm@build02 ~]$ spack log-parse --show=errors,warnings /local/swadm/spack/var/spack/stage/blast-plus-2.7.1-q37xd35ho3e7tbjy35lppe4seg7xhzmo/ncbi-blast-2.7.1+-src/spack-build.out
1 errors
0 warnings
414 checking for libungif... no
415 checking for libXpm... no
416 checking for freetype-config... no
>> 417 configure: error: --with-freetype explicitly specified, but no usable version found.Rebuilding the package with the following options:
$ spack -d install -j 1 <spec>
...spack-cc-blast-plus-q37xd35.in.log
spack-cc-blast-plus-q37xd35.out.log