-
Notifications
You must be signed in to change notification settings - Fork 2.4k
netgen 5.3.1 fails due to missing zlib.h #8470
Copy link
Copy link
Closed
Labels
Description
I am installing deal.II
spack install -j6 --only dependencies dealii@develop
and netgen 5.3.1 fails due to missing zlib.h
zlib is already installed by spack. But netgen does not seem to depend on zlib.
I am on ubuntu18.04 with gcc 7.3.0
==> Staging archive: /home/praveen/Applications/spack/var/spack/stage/netgen-5.3.1-icj6pivfmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1.tar.gz
==> Created stage in /home/praveen/Applications/spack/var/spack/stage/netgen-5.3.1-icj6pivfmdttb4a63skq7mkqbxnvx6v4
==> No patches needed for netgen
==> Building netgen [AutotoolsPackage]
==> Executing phase: 'autoreconf'
==> Executing phase: 'configure'
==> Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j6'
15 errors found in build log:
155 libtool: compile: /home/praveen/Applications/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.3.0/mpich-3.2.1-yf2xknkwvuopv
7bslicv4x66fd4ntpbc/bin/mpic++ -DHAVE_CONFIG_H -I. -I/home/praveen/Applications/spack/var/spack/stage/netgen-5.3.1-icj6piv
fmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1/libsrc/general -I../.. -I/home/praveen/Applications/spack/var/spack/stage/netgen-5.
3.1-icj6pivfmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1/libsrc/include -g -O2 -fopenmp -MT dynamicmem.lo -MD -MP -MF .deps/dynam
icmem.Tpo -c dynamicmem.cpp -fPIC -DPIC -o .libs/dynamicmem.o
156 libtool: compile: /home/praveen/Applications/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.3.0/mpich-3.2.1-yf2xknkwvuopv
7bslicv4x66fd4ntpbc/bin/mpic++ -DHAVE_CONFIG_H -I. -I/home/praveen/Applications/spack/var/spack/stage/netgen-5.3.1-icj6piv
fmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1/libsrc/general -I../.. -I/home/praveen/Applications/spack/var/spack/stage/netgen-5.
3.1-icj6pivfmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1/libsrc/include -g -O2 -fopenmp -MT bitarray.lo -MD -MP -MF .deps/bitarra
y.Tpo -c bitarray.cpp -fPIC -DPIC -o .libs/bitarray.o
157 libtool: compile: /home/praveen/Applications/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.3.0/mpich-3.2.1-yf2xknkwvuopv
7bslicv4x66fd4ntpbc/bin/mpic++ -DHAVE_CONFIG_H -I. -I/home/praveen/Applications/spack/var/spack/stage/netgen-5.3.1-icj6piv
fmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1/libsrc/general -I../.. -I/home/praveen/Applications/spack/var/spack/stage/netgen-5.
3.1-icj6pivfmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1/libsrc/include -g -O2 -fopenmp -MT mystring.lo -MD -MP -MF .deps/mystrin
g.Tpo -c mystring.cpp -fPIC -DPIC -o .libs/mystring.o
158 libtool: compile: /home/praveen/Applications/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.3.0/mpich-3.2.1-yf2xknkwvuopv
7bslicv4x66fd4ntpbc/bin/mpic++ -DHAVE_CONFIG_H -I. -I/home/praveen/Applications/spack/var/spack/stage/netgen-5.3.1-icj6piv
fmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1/libsrc/general -I../.. -I/home/praveen/Applications/spack/var/spack/stage/netgen-5.
3.1-icj6pivfmdttb4a63skq7mkqbxnvx6v4/netgen-5.3.1/libsrc/include -g -O2 -fopenmp -MT flags.lo -MD -MP -MF .deps/flags.Tpo
-c flags.cpp -fPIC -DPIC -o .libs/flags.o
159 In file included from ./myadt.hpp:46:0,
160 from bitarray.cpp:12:
>> 161 ./gzstream.h:35:10: fatal error: zlib.h: No such file or directory
162 #include <zlib.h>
163 ^~~~~~~~
164 compilation terminated.
165 Makefile:370: recipe for target 'bitarray.lo' failed
>> 166 make[3]: *** [bitarray.lo] Error 1
167 make[3]: *** Waiting for unfinished jobs....
168 In file included from ./myadt.hpp:46:0,
169 from mystring.cpp:19:
>> 170 ./gzstream.h:35:10: fatal error: zlib.h: No such file or directory
171 #include <zlib.h>
172 ^~~~~~~~
173 compilation terminated.
174 Makefile:370: recipe for target 'mystring.lo' failed
>> 175 make[3]: *** [mystring.lo] Error 1
176 In file included from ./myadt.hpp:46:0,
177 from hashtabl.cpp:13:
>> 178 ./gzstream.h:35:10: fatal error: zlib.h: No such file or directory
179 #include <zlib.h>
180 ^~~~~~~~
181 compilation terminated.
182 In file included from ./myadt.hpp:46:0,
183 from array.cpp:16:
>> 184 ./gzstream.h:35:10: fatal error: zlib.h: No such file or directory
185 #include <zlib.h>
186 ^~~~~~~~
187 compilation terminated.
188 In file included from ./myadt.hpp:46:0,
189 from dynamicmem.cpp:1:
>> 190 ./gzstream.h:35:10: fatal error: zlib.h: No such file or directory
191 #include <zlib.h>
192 ^~~~~~~~
193 compilation terminated.
194 Makefile:370: recipe for target 'hashtabl.lo' failed
>> 195 make[3]: *** [hashtabl.lo] Error 1
196 Makefile:370: recipe for target 'array.lo' failed
>> 197 make[3]: *** [array.lo] Error 1
198 Makefile:370: recipe for target 'dynamicmem.lo' failed
>> 199 make[3]: *** [dynamicmem.lo] Error 1
200 In file included from ./myadt.hpp:46:0,
201 from flags.cpp:12:
>> 202 ./gzstream.h:35:10: fatal error: zlib.h: No such file or directory
203 #include <zlib.h>
204 ^~~~~~~~
205 compilation terminated.
206 Makefile:370: recipe for target 'flags.lo' failed
>> 207 make[3]: *** [flags.lo] Error 1
208 make[3]: Leaving directory '/tmp/praveen/spack-stage/spack-stage-C9lOLU/netgen-5.3.1/libsrc/general'
209 Makefile:311: recipe for target 'all-recursive' failed
>> 210 make[2]: *** [all-recursive] Error 1
211 make[2]: Leaving directory '/tmp/praveen/spack-stage/spack-stage-C9lOLU/netgen-5.3.1/libsrc'
212 Makefile:354: recipe for target 'all-recursive' failed
>> 213 make[1]: *** [all-recursive] Error 1
214 make[1]: Leaving directory '/tmp/praveen/spack-stage/spack-stage-C9lOLU/netgen-5.3.1'
215 Makefile:285: recipe for target 'all' failed
>> 216 make: *** [all] Error 2
Reactions are currently unavailable