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Description
Steps to reproduce the issue
$ spack spec -I [email protected]
Input spec
--------------------------------
- [email protected]
Concretized
--------------------------------
- [email protected]%[email protected]~examples~ffmpeg~ipo+mpi+opengl2~osmesa~python~qt~xdmf build_system=cmake build_type=Release generator=make patches=34960ef,3b47ee0,541dc51,760fd6d,9535683,b790d00 arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs=shared,static tls=openssl arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~cpanm~opcode~open+shared+threads build_system=generic arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools patches=7a351bc arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~guile build_system=generic patches=599f134 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~ipo build_system=cmake build_type=RelWithDebInfo generator=make arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+libbsd build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+pic+shared build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-almalinux9-zen3
- ^[email protected]%[email protected]~doc~ipo+png+zlib build_system=cmake build_type=Release generator=make arch=linux-almalinux9-zen3
- ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make gl=glx patches=7992e52 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
- ^[email protected]%[email protected] build_system=bundle arch=linux-almalinux9-zen3
- ^[email protected]%[email protected]+glx+llvm+opengl~opengles+osmesa~strip build_system=meson buildtype=release default_library=shared arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~color build_system=autotools arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]+lex~nls build_system=autotools patches=f8b85a0 arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
- ^[email protected]%[email protected]+clang~cuda~flang+gold~ipo+libomptarget~libomptarget_debug~link_llvm_dylib+lld+lldb+llvm_dylib+lua~mlir+polly~python~split_dwarf~z3~zstd build_system=cmake build_type=Release compiler-rt=runtime generator=ninja libcxx=runtime libunwind=runtime openmp=runtime shlib_symbol_version=none targets=all version_suffix=none arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~gas+gold+headers~interwork+ld~libiberty~lto~nls+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~pcfile+shared build_system=makefile fetcher=curl arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=makefile patches=f6f6236 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=perl arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~jit+multibyte build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=python_pip patches=0f0b1bd arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+re2c build_system=generic arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl+tix+tkinter+uuid+zlib build_system=generic patches=0d98e93,ebdca64,f2fd060 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=generic arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=python_pip arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=python_pip arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl+tix+tkinter+uuid+zlib build_system=generic patches=0d98e93,ebdca64,f2fd060 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~guile build_system=generic patches=599f134 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~cxx~fortran+hl~ipo~java~map+mpi+shared~subfiling~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make patches=82088c8 arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~ipo~jpeg8~partial_decoder+pic build_system=cmake build_type=Release generator=make libs=shared,static arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~ipo~pic build_system=cmake build_type=Release generator=make libs=shared,static arch=linux-almalinux9-zen3
[-] ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~gssapi+ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs=shared,static tls=openssl arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~doc build_system=autotools patches=d9bb5a9,e01511a,e01ef71,ff8478d arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools patches=7793209 arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+ccitt~ipo~jbig+jpeg~jpeg12~lerc~libdeflate+logluv~lzma+lzw+next~old-jpeg+packbits~pic~pixarlog+shared+thunder~webp+zlib~zstd build_system=cmake build_type=Release generator=make arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+pic build_system=makefile libs=shared,static arch=linux-almalinux9-zen3
- ^[email protected]%[email protected]+blosc~byterange~dap~fsync~hdf4~jna+mpi~nczarr_zip+optimize~parallel-netcdf+pic+shared+szip+zstd build_system=autotools patches=0161eb8 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+avx2~ipo build_system=cmake build_type=Release generator=make arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~ipo+pic+shared build_system=cmake build_type=Release generator=make arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~programs build_system=makefile libs=shared,static arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~atomics~cuda~gpfs~internal-hwloc~internal-libevent~internal-pmix~java~legacylaunchers~lustre~memchecker~openshmem~orterunprefix~romio+rsh~static+vt+wrapper-rpath build_system=autotools fabrics=none romio-filesystem=none schedulers=none arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools patches=7793209 arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~cairo~cuda~gl~libudev+libxml2~netloc~nvml~oneapi-level-zero~opencl+pci~rocm build_system=autotools libs=shared,static arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+openssl build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~docs+shared build_system=generic certs=mozilla arch=linux-almalinux9-zen3
[+] ^ca-certificates-mozilla@2023-05-30%[email protected] build_system=generic arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected] build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=4e1d78c,62fc8a8,ff37630 arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]+gssapi build_system=autotools arch=linux-almalinux9-zen3
[e] ^[email protected]%[email protected]~cpanm~opcode~open+shared+threads build_system=generic arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~docs+pmi_backwards_compatibility~python~restful build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+column_metadata+dynamic_extensions+fts~functions+rtree build_system=autotools arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-almalinux9-zen3
[+] ^[email protected]%[email protected]+compat+new_strategies+opt+pic+shared build_system=autotools arch=linux-almalinux9-zen3Error message
Error message
[ 90%] Built target vtkIOParallel /usr/bin/ld: CMakeFiles/vtkProbeOpenGLVersion.dir/vtkProbeOpenGLVersion.cxx.o: in function `vtkRenderingOpenGL2_ModuleInit::~vtkRenderingOpenGL2_ModuleInit()': vtkProbeOpenGLVersion.cxx:(.text._ZN30vtkRenderingOpenGL2_ModuleInitD2Ev[_ZN30vtkRenderingOpenGL2_ModuleInitD5Ev]+0x5): undefined reference to `vtkRenderingOpenGL2_AutoInit_Destruct()' /usr/bin/ld: CMakeFiles/vtkProbeOpenGLVersion.dir/vtkProbeOpenGLVersion.cxx.o: in function `main': vtkProbeOpenGLVersion.cxx:(.text.startup+0x10): undefined reference to `vtkRenderer::New()' /usr/bin/ld: vtkProbeOpenGLVersion.cxx:(.text.startup+0x18): undefined reference to `vtkRenderWindow::New()' /usr/bin/ld: vtkProbeOpenGLVersion.cxx:(.text.startup+0x50): undefined reference to `vtkObjectBase::GetClassName() const' /usr/bin/ld: vtkProbeOpenGLVersion.cxx:(.text.startup+0x15e): undefined reference to `vtkOutputWindow::GetInstance()' /usr/bin/ld: vtkProbeOpenGLVersion.cxx:(.text.startup+0x16f): undefined reference to `vtkOutputWindow::GetInstance()' /usr/bin/ld: CMakeFiles/vtkProbeOpenGLVersion.dir/vtkProbeOpenGLVersion.cxx.o: in function `_GLOBAL__sub_I_main': vtkProbeOpenGLVersion.cxx:(.text.startup+0x288): undefined reference to `vtkDebugLeaksManager::vtkDebugLeaksManager()' /usr/bin/ld: vtkProbeOpenGLVersion.cxx:(.text.startup+0x297): undefined reference to `vtkDebugLeaksManager::~vtkDebugLeaksManager()' /usr/bin/ld: vtkProbeOpenGLVersion.cxx:(.text.startup+0x2a1): undefined reference to `vtkRenderingOpenGL2_AutoInit_Construct()' /usr/bin/ld: vtkProbeOpenGLVersion.cxx:(.text.startup+0x2bf): undefined reference to `vtkOutputWindowCleanup::vtkOutputWindowCleanup()' /usr/bin/ld: vtkProbeOpenGLVersion.cxx:(.text.startup+0x2ce): undefined reference to `vtkOutputWindowCleanup::~vtkOutputWindowCleanup()'/usr/bin/ld: ../../lib/libvtkRenderingOpenGL2-8.2.so.1: undefined reference to
vtkPolyDataMapper::PrintSelf(std::ostream&, vtkIndent)' /usr/bin/ld: ../../lib/libvtkRenderingCore-8.2.so.1: undefined reference tovtkPiecewiseFunction::AddPoint(double, double)'
/usr/bin/ld: /disk/nobackup2/carlos/spack-stage/spack-stage-vtk-8.2.1a-45rtrppcoqhycgrqcdxv2erm76adm6d5/spack-build-45rtrpp/lib/libvtkFiltersGeneral-8.2.so.1: undefined reference tovtkPlaneCollection::GetNextPlane(void*&)' /usr/bin/ld: ../../lib/libvtkRenderingCore-8.2.so.1: undefined reference tovtkInformation::Set(vtkInformationDoubleKey*, double)'
/usr/bin/ld: ../../lib/libvtkFiltersCore-8.2.so.1: undefined reference tovtkIdList::Resize(long long)' /usr/bin/ld: ../../lib/libvtkFiltersCore-8.2.so.1: undefined reference tovtkSelectionAlgorithm::FillInputPortInformation(int, vtkInformation*)'
/usr/bin/ld: ../../lib/libvtkRenderingOpenGL2-8.2.so.1: undefined reference tovtkPolyData::SetStrips(vtkCellArray*)' /usr/bin/ld: ../../lib/libvtkRenderingOpenGL2-8.2.so.1: undefined reference tovtkRenderer::DeviceRenderOpaqueGeometry()'
/usr/bin/ld: ../../lib/libvtkFiltersCore-8.2.so.1: undefined reference tovtkTable::GetColumn(long long)' /usr/bin/ld: /disk/nobackup2/carlos/spack-stage/spack-stage-vtk-8.2.1a-45rtrppcoqhycgrqcdxv2erm76adm6d5/spack-build-45rtrpp/lib/libvtkFiltersGeneral-8.2.so.1: undefined reference tovtkStreamingTessellator::AdaptivelySample0Facet(double*) const'
/usr/bin/ld: ../../lib/libvtkRenderingOpenGL2-8.2.so.1: undefined reference to `vtkAlgorithm::FillInputPortInformation(int, vtkInformation*)'collect2: error: ld returned 1 exit status
make[2]: *** [Rendering/OpenGL2/CMakeFiles/vtkProbeOpenGLVersion.dir/build.make:114: bin/vtkProbeOpenGLVersion] Error 1
make[2]: Leaving directory '/disk/nobackup2/carlos/spack-stage/spack-stage-vtk-8.2.1a-45rtrppcoqhycgrqcdxv2erm76adm6d5/spack-build-45rtrpp'
make[1]: *** [CMakeFiles/Makefile2:3450: Rendering/OpenGL2/CMakeFiles/vtkProbeOpenGLVersion.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....make[2]: Leaving directory '/disk/nobackup2/carlos/spack-stage/spack-stage-vtk-8.2.1a-45rtrppcoqhycgrqcdxv2erm76adm6d5/spack-build-45rtrpp'
[ 91%] Built target vtkChartsCore
make[1]: Leaving directory '/disk/nobackup2/carlos/spack-stage/spack-stage-vtk-8.2.1a-45rtrppcoqhycgrqcdxv2erm76adm6d5/spack-build-45rtrpp'make: *** [Makefile:139: all] Error 2
Information on your system
- Spack: 0.23.0.dev0 (722d401)
- Python: 3.9.18
- Platform: linux-almalinux9-zen3
- Concretizer: clingo
Additional information
spack-build-out.txt
spack-build-env.txt
General information
- I have run
spack debug reportand reported the version of Spack/Python/Platform - I have run
spack maintainers <name-of-the-package>and @mentioned any maintainers - I have uploaded the build log and environment files
- I have searched the issues of this repo and believe this is not a duplicate