Installation issue: Gromacs #40983
Description
Steps to reproduce the issue
$ spack spec -l [email protected]+cuda~mpi~shared cuda_arch=61,70,75,80,86 ^[email protected] ^intel-oneapi-mkl
Input spec
--------------------------------
- [email protected]+cuda~mpi~shared cuda_arch=61,70,75,80,86
- ^[email protected]
- ^intel-oneapi-mkl
Concretized
--------------------------------
- vs2oajd [email protected]%[email protected]~cp2k+cuda~cycle_subcounters~double+hwloc~intel_provided_gcc~ipo~mdrun_only~mpi~nosuffix~opencl+openmp~plumed~relaxed_double_precision~shared~sycl build_system=cmake build_type=Release cuda_arch=61,70,75,80,86 generator=make openmp_max_threads=none arch=linux-ubuntu22.04-x86_64
[+] chmsw57 ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-ubuntu22.04-x86_64
[+] xuchgfp ^[email protected]%[email protected]~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs=shared,static tls=openssl arch=linux-ubuntu22.04-x86_64
[+] x4spyuy ^[email protected]%[email protected] build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] 5s77zdm ^[email protected]%[email protected]~docs+shared build_system=generic certs=mozilla arch=linux-ubuntu22.04-x86_64
[+] wyotaab ^ca-certificates-mozilla@2023-05-30%[email protected] build_system=generic arch=linux-ubuntu22.04-x86_64
[+] absc2lw ^[email protected]%[email protected]+cpanm+opcode+open+shared+threads build_system=generic patches=714e4d1 arch=linux-ubuntu22.04-x86_64
[+] wu2onzy ^[email protected]%[email protected]+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=linux-ubuntu22.04-x86_64
[+] pi46mvg ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-ubuntu22.04-x86_64
[+] b5z5cg7 ^[email protected]%[email protected] build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] lqbchac ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-ubuntu22.04-x86_64
[+] 2qhma5e ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] ggryydn ^[email protected]%[email protected]+compat+opt build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] 5oi447c ^[email protected]%[email protected]~allow-unsupported-compilers~dev build_system=generic arch=linux-ubuntu22.04-x86_64
[+] qadf6ld ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] d7jhjjz ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-ubuntu22.04-x86_64
[+] wwnvb37 ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-ubuntu22.04-x86_64
[+] bkojiq3 ^[email protected]%[email protected]~guile build_system=generic arch=linux-ubuntu22.04-x86_64
[+] nh6b7y5 ^[email protected]%[email protected]~cairo~cuda~gl~libudev+libxml2~netloc~nvml~oneapi-level-zero~opencl+pci~rocm build_system=autotools libs=shared,static arch=linux-ubuntu22.04-x86_64
[+] ntt7gqa ^[email protected]%[email protected] build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] tr2m354 ^[email protected]%[email protected] build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] k7unfrn ^[email protected]%[email protected]+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-ubuntu22.04-x86_64
[+] vdxeuyz ^[email protected]%[email protected] build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] nq5wt5g ^[email protected]%[email protected] build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] 6n67jmh ^[email protected]%[email protected] build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] 3t7cn7m ^[email protected]%[email protected] build_system=autotools arch=linux-ubuntu22.04-x86_64
[+] mlikjsa ^[email protected]%[email protected]~cluster+envmods~ilp64~shared build_system=generic mpi_family=none threads=openmp arch=linux-ubuntu22.04-x86_64
[+] pksgrqf ^[email protected]%[email protected]~ipo~shared+tm build_system=cmake build_type=Release cxxstd=default generator=make patches=91755c6 arch=linux-ubuntu22.04-x86_64Error message
Error message
==> Error: AttributeError: 'IntelOneApiStaticLibraryList' object has no attribute 'joined'
The 'gromacs' package cannot find an attribute while trying to build from sources. This might be due to a change in Spack's package format to support multiple build-systems for a single package. You can fix this by updating the build recipe, and you can also report the issue as a bug. More information at https://spack.readthedocs.io/en/latest/packaging_guide.html#installation-procedure
/root/admin/scripts/spack/var/spack/repos/builtin/packages/gromacs/package.py:497, in cmake_args:
494
495 options.append("-DGMX_EXTERNAL_LAPACK:BOOL=ON")
496 if self.spec["lapack"].libs:
>> 497 options.append("-DGMX_LAPACK_USER={0}".format(self.spec["lapack"].libs.joined(";")))
498
499 options.append("-DGMX_EXTERNAL_BLAS:BOOL=ON")
500 if self.spec["blas"].libs:
Information on your system
- Spack: 0.21.0.dev0 (36a5b44)
- Python: 3.10.12
- Platform: linux-ubuntu22.04-skylake_avx512
- Concretizer: clingo
Additional information
spack-build-out.txt
spack-build-env.txt
@danielahlin @eirrgang @junghans @haampie
General information
- I have run
spack debug reportand reported the version of Spack/Python/Platform - I have run
spack maintainers <name-of-the-package>and @mentioned any maintainers - I have uploaded the build log and environment files
- I have searched the issues of this repo and believe this is not a duplicate