Installation issue: python #37171
Description
Steps to reproduce the issue
$ spack spec -I [email protected]+zlib
Input spec
--------------------------------
- [email protected]+zlib
Concretized
--------------------------------
[+] [email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline
+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]+libbsd build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-open
suse15-zen
[+] ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]~python build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=makefile arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-o
pensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]~obsolete_api build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]+cpanm+open+shared+threads build_system=generic arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=linux
-opensuse15-zen
[+] ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]~docs~shared build_system=generic certs=mozilla arch=linux-opensuse15-zen
[+] ^ca-certificates-mozilla@2023-01-10%[email protected] build_system=generic arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]+column_metadata+dynamic_extensions+fts~functions+rtree build_system=autotools arch=l
inux-opensuse15-zen
[+] ^[email protected]%[email protected] build_system=autotools arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-opensuse15-zen
[+] ^[email protected]%[email protected]+optimize+pic+shared build_system=makefile arch=linux-opensuse15-zen
$ spack install --overwrite -y [email protected]
Error message
Instance of python installed by spack cannot import the zlib module
Error message
```console ❯ spack load [email protected] ❯ which python3 /home/awadell/spack/opt/spack/linux-opensuse15-zen/gcc-7.5.0/python-3.10.10-xplxbc5o5jrloglj35wngefohj7tt6ze/bin/python3 ❯ python3 -c "import zlib" Could not find platform dependent libraries Consider setting $PYTHONHOME to [:] Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'zlib' ❯ PYTHONHOME=~/spack/opt/spack/linux-opensuse15-zen/gcc-7.5.0/python-3.10.10-xplxbc5o5jrloglj35wngefohj7tt6ze/ python3 -c "import zlib" Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'zlib' ```
Information on your system
❯ spack debug report
- Spack: 0.20.0.dev0 (c76023d)
- Python: 3.6.13
- Platform: linux-opensuse15-zen3
- Concretizer: clingo
Additional information
spack-build-out.txt
spack-build-env.txt
spack-configure-args.txt
spack-build-01-configure-out.txt
@adamjstewart @pradyunsg @scheibelp @skosukhin
Staged Version works
Installing with spack and keeping the stage, results in a usable instance, but the installed version lack's zlib:
❯ spack install --overwrite --keep-stage [email protected]+zlib
...
❯ spack cd [email protected]+zlib
❯ ./python
Python 3.10.10 (main, Apr 24 2023, 19:39:34) [GCC 7.5.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import zlib
>>> General information
- I have run
spack debug reportand reported the version of Spack/Python/Platform - I have run
spack maintainers <name-of-the-package>and @mentioned any maintainers - I have uploaded the build log and environment files
- I have searched the issues of this repo and believe this is not a duplicate