spack test: Spec.package can only be called on concrete specs #35519
Description
Steps to reproduce
Unclear exactly which packages are required to reproduce this. I have a massive environment I'm testing:
spack:
specs:
- gdal
- opencv
- py-black
- py-cartopy
- py-cmocean
- py-einops
- py-fiona
- py-flake8
- py-geocube
- py-geopandas
- py-h5py
- py-ipywidgets
- py-isort
- py-jax
- py-kornia
- py-laspy
- py-matplotlib
- py-mypy
- py-nbmake
- py-nbsphinx
- py-netcdf4
- py-numpy
- py-omegaconf
- py-pandas
- py-pillow-simd
- py-pycocotools
- py-pydocstyle
- py-pygeos
- py-pyproj
- py-pyro-ppl
- py-pytest
- py-pytest-cov
- py-pytorch-lightning
- py-pytorch-sphinx-theme
- py-pyupgrade
- py-radiant-mlhub
- py-rarfile
- py-rasterio
- py-rtree
- py-setuptools
- py-scikit-image
- py-scikit-learn
- py-scipy
- py-segmentation-models-pytorch
- py-shapely
- py-sphinx
- py-tensorboard
- py-timm
- py-torch
- py-torchmetrics
- py-torchvision
- py-xarray
- py-zipfile-deflate64
view: true
concretizer:
unify: trueI run spack install and spack test run.
Error message
$ spack -d test run
...
==> [2023-02-16-11:55:18.673419] Installing /projects/dali/spack/var/spack/repos/builtin/packages/openjdk/package.py to /home/adamjs5/.spack/test/32ccsglunnecbl3oi2fztym6ti6alinu/repo/openjdk
==> [2023-02-16-11:55:18.677207] Installing /projects/dali/spack/var/spack/repos/builtin/packages/cuda/package.py to /home/adamjs5/.spack/test/32ccsglunnecbl3oi2fztym6ti6alinu/repo/cuda
Traceback (most recent call last):
File "/projects/dali/spack/bin/spack", line 54, in <module>
sys.exit(main())
File "/projects/dali/spack/lib/spack/spack_installable/main.py", line 37, in main
sys.exit(spack.main.main(argv))
File "/projects/dali/spack/lib/spack/spack/main.py", line 1004, in main
return _main(argv)
File "/projects/dali/spack/lib/spack/spack/main.py", line 959, in _main
return finish_parse_and_run(parser, cmd_name, env_format_error)
File "/projects/dali/spack/lib/spack/spack/main.py", line 987, in finish_parse_and_run
return _invoke_command(command, parser, args, unknown)
File "/projects/dali/spack/lib/spack/spack/main.py", line 636, in _invoke_command
return_val = command(parser, args)
File "/projects/dali/spack/lib/spack/spack/cmd/test.py", line 476, in test
globals()["test_%s" % args.test_command](args)
File "/projects/dali/spack/lib/spack/spack/cmd/test.py", line 226, in test_run
externals=args.externals,
File "/projects/dali/spack/lib/spack/spack/install_test.py", line 169, in __call__
self.write_reproducibility_data()
File "/projects/dali/spack/lib/spack/spack/install_test.py", line 393, in write_reproducibility_data
spack.repo.path.dump_provenance(vspec, repo_cache_path)
File "/projects/dali/spack/lib/spack/spack/repo.py", line 304, in converter
return function(self, spec_like, *args, **kwargs)
File "/projects/dali/spack/lib/spack/spack/repo.py", line 859, in dump_provenance
return self.repo_for_pkg(spec).dump_provenance(spec, path)
File "/projects/dali/spack/lib/spack/spack/repo.py", line 304, in converter
return function(self, spec_like, *args, **kwargs)
File "/projects/dali/spack/lib/spack/spack/repo.py", line 1068, in dump_provenance
for patch in itertools.chain.from_iterable(spec.package.patches.values()):
File "/projects/dali/spack/lib/spack/spack/spec.py", line 1615, in package
assert self.concrete, "Spec.package can only be called on concrete specs"
AssertionError: Spec.package can only be called on concrete specsI tried spack clean -m in case the cache contained an old patch that no longer existed but it didn't help.
Information on your system
- Spack: 0.20.0.dev0
- Python: 3.6.8
- Platform: linux-rhel7-zen3
- Concretizer: clingo
General information
- I have run
spack debug reportand reported the version of Spack/Python/Platform - I have searched the issues of this repo and believe this is not a duplicate
- I have run the failing commands in debug mode and reported the output