Updated spack 'develop' fails to build libsigesgv on RHEL6 with native [email protected] (wrong arch) #13248
Description
snl-atdm-issue
I just tried upgrading Spack by pulling the Spack 'develop' version:
cf9de05 "multimethods: avoid calling caller_locals() in Python 3 (#13238)"
Author: Todd Gamblin <[email protected]>
Date: Thu Oct 17 06:40:23 2019 -0700 (3 hours ago)
M lib/spack/spack/multimethod.py
M lib/spack/spack/package.py
Running:
$ ./atdm-spack/spack/bin/spack install -j20
with this spack.yaml file:
spack.yaml
# Spack env file to build a compiler using Spack
#
# NOTE: Spack will not only read this file but will also write to it so make
# sure you create a copy before spack uses it!
#
spack:
# Packages to build (ordered mostly by dependencies)
specs: [
[email protected],
]
modules:
tcl:
hash_length: 0
naming_scheme: spack-${PACKAGE}/${VERSION}
whitelist:
- gcc
blacklist:
- '%[email protected]'
all:
conflict:
- '{name}'
filter:
environment_blacklist: [CPATH, LIBRARY_PATH]
environment:
set:
${PACKAGE}_ROOT: ${PREFIX}
verbose: false
packages:
all:
compiler: [[email protected]]
include:
- packages_tools_for_compiler_build.yaml
- common_options.yaml
NOTE: packages_tools_for_compiler_build.yaml is empty and:
common_options.yaml is:
mirrors:
local_filesystem: file:///ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror
config:
misc_cache: .spack/cache
it showed the following error:
==> Installing libsigsegv
==> Searching for binary cache of libsigsegv
==> Finding buildcaches in /ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror/build_cache
==> No binary for libsigsegv found: installing from source
curl: (37) Couldn't open file /ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror/libsigsegv/libsigsegv-2.12.tar.gz
==> Fetching file:///ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror/libsigsegv/libsigsegv-2.12.tar.gz
==> Fetching from file:///ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror/libsigsegv/libsigsegv-2.12.tar.gz failed.
==> Fetching https://ftpmirror.gnu.org/libsigsegv/libsigsegv-2.12.tar.gz
==> Staging archive: /tmp/rabartl/spack-stage/spack-stage-libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t/libsigsegv-2.12.tar.gz
==> Created stage in /tmp/rabartl/spack-stage/spack-stage-libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t
==> No patches needed for libsigsegv
==> Building libsigsegv [AutotoolsPackage]
==> Executing phase: 'autoreconf'
==> Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 77:
'/tmp/rabartl/spack-stage/spack-stage-libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t/spack-src/configure' '--prefix=/home/rabartl/Spack.base3/atdm-spack/spack/opt/spack/linux-rhel6-haswell/gcc-4.4.7/libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t' '--enable-shared'
2 errors found in build log:
8 checking for a thread-safe mkdir -p... /bin/mkdir -p
9 checking for gawk... gawk
10 checking whether make sets $(MAKE)... yes
11 checking whether make supports nested variables... yes
12 checking for gcc... /home/rabartl/Spack.base3/atdm-spack/spack/lib/s
pack/env/gcc/gcc
13 checking whether the C compiler works... no
>> 14 configure: error: in `/tmp/rabartl/spack-stage/spack-stage-libsigseg
v-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t/spack-src':
>> 15 configure: error: C compiler cannot create executables
16 See `config.log' for more details
See build log for details:
/tmp/rabartl/spack-stage/spack-stage-libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t/spack-build-out.txt
The full output is shown below.
Full spack install output
==> Concretized [email protected]
- i446xkz [email protected]%[email protected]~binutils languages=c,c++,fortran ~nvptx patches=51aebe82afc9a0433ca3503a36592edf5ca769b1433986919cfb9ae2ddf3e343 ~piclibs~strip arch=linux-rhel6-haswell
- 5wln5gl ^[email protected]%[email protected] arch=linux-rhel6-haswell
- sidqv37 ^[email protected]%[email protected] arch=linux-rhel6-haswell
- 6ebd7qb ^[email protected]%[email protected] patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 +sigsegv arch=linux-rhel6-haswell
- 4wg47p4 ^[email protected]%[email protected] arch=linux-rhel6-haswell
- nqlcjvd ^[email protected]%[email protected]+cpanm+shared+threads arch=linux-rhel6-haswell
- ztgcm72 ^[email protected]%[email protected] arch=linux-rhel6-haswell
- frribg6 ^[email protected]%[email protected] arch=linux-rhel6-haswell
- cxc3lta ^[email protected]%[email protected]~symlinks~termlib arch=linux-rhel6-haswell
- icmdwkr ^[email protected]%[email protected] arch=linux-rhel6-haswell
- vvars5j ^[email protected]%[email protected] arch=linux-rhel6-haswell
- xmpzwlz ^[email protected]%[email protected] arch=linux-rhel6-haswell
- obxrdps ^[email protected]%[email protected] arch=linux-rhel6-haswell
- suz2poy ^[email protected]%[email protected] arch=linux-rhel6-haswell
- bkqhlr7 ^[email protected]%[email protected] patches=66a5d58364113a21405fc53f4a48f4e8 arch=linux-rhel6-haswell
- zmpvci4 ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel6-haswell
==> Updating view at /home/rabartl/Spack.base3/.spack-env/view
==> Installing environment /home/rabartl/Spack.base3
==> Installing libsigsegv
==> Searching for binary cache of libsigsegv
==> Finding buildcaches in /ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror/build_cache
==> No binary for libsigsegv found: installing from source
curl: (37) Couldn't open file /ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror/libsigsegv/libsigsegv-2.12.tar.gz
==> Fetching file:///ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror/libsigsegv/libsigsegv-2.12.tar.gz
==> Fetching from file:///ascldap/users/rabartl/Spack.base3/atdm-spack/atdm-spack-tarball-mirror/libsigsegv/libsigsegv-2.12.tar.gz failed.
==> Fetching https://ftpmirror.gnu.org/libsigsegv/libsigsegv-2.12.tar.gz
==> Staging archive: /tmp/rabartl/spack-stage/spack-stage-libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t/libsigsegv-2.12.tar.gz
==> Created stage in /tmp/rabartl/spack-stage/spack-stage-libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t
==> No patches needed for libsigsegv
==> Building libsigsegv [AutotoolsPackage]
==> Executing phase: 'autoreconf'
==> Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 77:
'/tmp/rabartl/spack-stage/spack-stage-libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t/spack-src/configure' '--prefix=/home/rabartl/Spack.base3/atdm-spack/spack/opt/spack/linux-rhel6-haswell/gcc-4.4.7/libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t' '--enable-shared'
2 errors found in build log:
8 checking for a thread-safe mkdir -p... /bin/mkdir -p
9 checking for gawk... gawk
10 checking whether make sets $(MAKE)... yes
11 checking whether make supports nested variables... yes
12 checking for gcc... /home/rabartl/Spack.base3/atdm-spack/spack/lib/s
pack/env/gcc/gcc
13 checking whether the C compiler works... no
>> 14 configure: error: in `/tmp/rabartl/spack-stage/spack-stage-libsigseg
v-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t/spack-src':
>> 15 configure: error: C compiler cannot create executables
16 See `config.log' for more details
See build log for details:
/tmp/rabartl/spack-stage/spack-stage-libsigsegv-2.12-4wg47p4nrbuzpsovsxhbypwtbcu25k4t/spack-build-out.txt