Hi @ctb,
I ran --track-abundance with sourmash gather, and wasn't sure how to interpret the values. Should I be looking at average_abund?
On another note, for --output-unassigned, is it correct to interpret that file as the list of hashes that were unclassified for the "mins" array? If I took the length of that array and added it to the sum of average_abund (or the correct column), could I calculate the % abundance from that sum? Apologies if this is completely off the mark!
Hi @ctb,
I ran
--track-abundancewithsourmash gather, and wasn't sure how to interpret the values. Should I be looking ataverage_abund?On another note, for
--output-unassigned, is it correct to interpret that file as the list of hashes that were unclassified for the "mins" array? If I took the length of that array and added it to the sum ofaverage_abund(or the correct column), could I calculate the % abundance from that sum? Apologies if this is completely off the mark!