FROM debian:buster

ARG VER="12-6"

RUN dpkg --add-architecture arm64

RUN apt-get update

RUN apt-get -y install -o APT::Immediate-Configure=false \

git wget vim ninja-build crossbuild-essential-arm64 zlib1g-dev:arm64 libbz2-dev:arm64 software-properties-common

ENV CC=/usr/bin/aarch64-linux-gnu-gcc

ENV CXX=/usr/bin/aarch64-linux-gnu-g++

ENV CUDAHOSTCXX=/usr/bin/aarch64-linux-gnu-g++

ENV CUDACXX=/usr/local/cuda/bin/nvcc

ENV LIBGCC=/usr/lib/gcc-cross/aarch64-linux-gnu/8

ENV CUDAFLAGS="-t 0 --split-compile=0"

RUN wget https://github.com/Kitware/CMake/releases/download/v3.31.0/cmake-3.31.0-linux-x86_64.sh; \

chmod +x cmake-3.31.0-linux-x86_64.sh; \

./cmake-3.31.0-linux-x86_64.sh --skip-license --prefix=/usr/local;

RUN wget -O cuda-x64.deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-keyring_1.1-1_all.deb

RUN wget -O cuda-sbsa.deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/cross-linux-sbsa/cuda-keyring_1.1-1_all.deb

RUN dpkg -i cuda-x64.deb && dpkg -i cuda-sbsa.deb

RUN apt-get update

RUN apt-get install -y cuda-nvcc-${VER} cuda-nvcc-cross-sbsa-${VER} cuda-cudart-cross-sbsa-${VER}

WORKDIR /work

ADD . .

RUN echo "set(CMAKE_SYSTEM_NAME Linux)" > /work/toolchain.cmake; \

echo "set(CMAKE_SYSTEM_PROCESSOR aarch64)" >> /work/toolchain.cmake; \

echo "set(CMAKE_C_COMPILER /usr/bin/aarch64-linux-gnu-gcc)" >> /work/toolchain.cmake; \

echo "set(CMAKE_CXX_COMPILER /usr/bin/aarch64-linux-gnu-g++)" >> /work/toolchain.cmake;

RUN mkdir -p /work/build && cd /work/build; \

if [ -e "${LIBGCC}/libgomp.so" ]; then \

mv -f -- "${LIBGCC}/libgomp.so" "${LIBGCC}/libgomp.so.disabled"; \

fi; \

/usr/local/bin/cmake -GNinja -DCMAKE_BUILD_TYPE=Release -DHAVE_TESTS=1 -DENABLE_WERROR=1 -DHAVE_ARM8=1 \

-DCMAKE_TOOLCHAIN_FILE=/work/toolchain.cmake \

-DOpenMP_C_FLAGS="-fopenmp -I${LIBGCC} -L${LIBGCC}" -DOpenMP_C_LIB_NAMES=gomp -DOpenMP_CXX_FLAGS="-fopenmp -I${LIBGCC} -L${LIBGCC}" -DOpenMP_CXX_LIB_NAMES=gomp -DOpenMP_gomp_LIBRARY="${LIBGCC}/libgomp.a" \

-DATOMIC_LIB_OVERRIDE="${LIBGCC}/libatomic.a" \

-DCMAKE_POLICY_DEFAULT_CMP0074=NEW -DCMAKE_POLICY_DEFAULT_CMP0144=NEW \

-DFORCE_STATIC_DEPS=1 -DENABLE_CUDA=1 -DCMAKE_CUDA_ARCHITECTURES="75-real;80-real;86-real;89-real;90" ..; \

cmake --build . -j$(nproc --all) -v;

RUN if readelf -a /work/build/src/mmseqs | grep -i "Shared library" | grep -P -v "(linux-vdso|ld-linux-aarch64|libc|libm|libdl|librt|libpthread).so" | grep -q .; then \

echo "Error: unwanted libraries found"; \

readelf -a /work/build/src/mmseqs | grep -i "Shared library"; \

exit 1; \

fi; \

if readelf -Ws /work/build/src/mmseqs | grep -q GLIBC_PRIVATE; then \

echo "Error: binary contains private glibc symbols"; \

readelf -Ws /work/build/src/mmseqs; \

exit 1; \

fi; \

LIBC_V=$(readelf -V /work/build/src/mmseqs | awk '$3 ~ /^GLIBC_/ { print $3 }' | sort -V | tail -n1); \

if awk -v ver="$LIBC_V" 'BEGIN { split(ver, v, /[_.]/); if ((v[2] > 2) || (v[2] == 2 && v[3] > 28)) exit 0; exit 1; }'; then \

echo "Error: glibc too new"; \

exit 1; \

fi;

strategy:

matrix:

x86_64:

ARCH: x86_64

DOCKER: .github/workflows/Dockerfile.GPU-manylinux2014

aarch64:

ARCH: aarch64

DOCKER: .github/workflows/Dockerfile.GPU-buster-cross-sbsa

artifactName: mmseqs-linux-gpu-$(ARCH)

artifactName: mmseqs-linux-gpu-x86_64

- task: DownloadPipelineArtifact@1

inputs:

artifactName: mmseqs-linux-gpu-aarch64

targetPath: $(Build.SourcesDirectory)/mmseqs/bin

- script:

chmod +x "${BUILD_SOURCESDIRECTORY}/mmseqs/bin/mmseqs"

- task: ArchiveFiles@2

inputs:

rootFolderOrFile: $(Build.SourcesDirectory)/mmseqs

archiveFile: $(Build.SourcesDirectory)/mmseqs-linux-gpu-arm64.tar.gz

includeRootFolder: true

archiveType: tar